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Volumn 7, Issue 4, 2011, Pages

An evolutionary genomic approach to identify genes involved in human birth timing

(23)  Plunkett, Jevon a,b   Doniger, Scott b   Orabona, Guilherme a,c   Morgan, Thomas a,c   Haataja, Ritva d   Hallman, Mikko d   Puttonen, Hilkka e   Menon, Ramkumar f,g   Kuczynski, Edward h   Norwitz, Errol h   Snegovskikh, Victoria h   Palotie, Aarno e,i,j   Peltonen, Leena e,i,j   Fellman, Vineta e,k   deFranco, Emily A l   Chaudhari, Bimal P b   McGregor, Tracy L a   McElroy, Jude J a,c   Oetjens, Matthew T c   Teramo, Kari e   more..


Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AFRICAN AMERICAN; ARTICLE; BIRTH; CONTROLLED STUDY; FEMALE; FINLAND; FSHR GENE; GENE; GENE IDENTIFICATION; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENETIC RISK; GENETIC VARIABILITY; HUMAN; MAJOR CLINICAL STUDY; MOLECULAR EVOLUTION; PREMATURE LABOR; SINGLE NUCLEOTIDE POLYMORPHISM; ANIMAL; BIOLOGICAL MODEL; CASE CONTROL STUDY; COHORT ANALYSIS; GENE FREQUENCY; GENETICS; GENOTYPE; PREMATURITY; RISK FACTOR;

EID: 79955608065     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1001365     Document Type: Article
Times cited : (89)

References (54)
  • 1
    • 33751333649 scopus 로고    scopus 로고
    • Preterm birth: a review of genetic factors and future directions for genetic study
    • Esplin MS, (2006) Preterm birth: a review of genetic factors and future directions for genetic study. Obstet Gynecol Surv 61: 800-806.
    • (2006) Obstet Gynecol Surv , vol.61 , pp. 800-806
    • Esplin, M.S.1
  • 2
    • 24344464932 scopus 로고    scopus 로고
    • Research agenda for preterm birth: recommendations from the March of Dimes
    • Green NS, Damus K, Simpson JL, Iams J, Reece EA, et al. (2005) Research agenda for preterm birth: recommendations from the March of Dimes. Am J Obstet Gynecol 193: 626-635.
    • (2005) Am J Obstet Gynecol , vol.193 , pp. 626-635
    • Green, N.S.1    Damus, K.2    Simpson, J.L.3    Iams, J.4    Reece, E.A.5
  • 3
    • 0021894328 scopus 로고
    • Postnatal development of vision in human and nonhuman primates
    • Boothe RG, Dobson V, Teller DY, (1985) Postnatal development of vision in human and nonhuman primates. Annu Rev Neurosci 8: 495-545.
    • (1985) Annu Rev Neurosci , vol.8 , pp. 495-545
    • Boothe, R.G.1    Dobson, V.2    Teller, D.Y.3
  • 4
    • 0024874614 scopus 로고
    • Dental Development as a Measure of Life-History in Primates
    • Smith BH, (1989) Dental Development as a Measure of Life-History in Primates. Evolution 43: 683-688.
    • (1989) Evolution , vol.43 , pp. 683-688
    • Smith, B.H.1
  • 5
    • 33846456301 scopus 로고    scopus 로고
    • Parturition
    • Smith R, (2007) Parturition. N Engl J Med 356: 271-283.
    • (2007) N Engl J Med , vol.356 , pp. 271-283
    • Smith, R.1
  • 6
    • 0036876570 scopus 로고    scopus 로고
    • Birth, obstetrics and human evolution
    • Rosenberg K, Trevathan W, (2002) Birth, obstetrics and human evolution. BJOG 109: 1199-1206.
    • (2002) BJOG , vol.109 , pp. 1199-1206
    • Rosenberg, K.1    Trevathan, W.2
  • 7
    • 66249109285 scopus 로고    scopus 로고
    • Neandertal birth canal shape and the evolution of human childbirth
    • Weaver TD, Hublin JJ, (2009) Neandertal birth canal shape and the evolution of human childbirth. Proc Natl Acad Sci U S A 106: 8151-8156.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 8151-8156
    • Weaver, T.D.1    Hublin, J.J.2
  • 8
    • 24344500211 scopus 로고    scopus 로고
    • Initial sequence of the chimpanzee genome and comparison with the human genome
    • Chimpanzee Sequencing and Analysis Consortium
    • Chimpanzee Sequencing and Analysis Consortium (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437: 69-87.
    • (2005) Nature , vol.437 , pp. 69-87
  • 9
    • 0346243805 scopus 로고    scopus 로고
    • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
    • Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, et al. (2003) Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science 302: 1960-1963.
    • (2003) Science , vol.302 , pp. 1960-1963
    • Clark, A.G.1    Glanowski, S.2    Nielsen, R.3    Thomas, P.D.4    Kejariwal, A.5
  • 11
    • 33748675254 scopus 로고    scopus 로고
    • An RNA gene expressed during cortical development evolved rapidly in humans
    • Pollard KS, Salama SR, Lambert N, Lambot MA, Coppens S, et al. (2006) An RNA gene expressed during cortical development evolved rapidly in humans. Nature 443: 167-172.
    • (2006) Nature , vol.443 , pp. 167-172
    • Pollard, K.S.1    Salama, S.R.2    Lambert, N.3    Lambot, M.A.4    Coppens, S.5
  • 12
    • 56749132020 scopus 로고    scopus 로고
    • The genetics of birth timing: insights into a fundamental component of human development
    • Chaudhari BP, Plunkett J, Ratajczak CK, Shen TT, DeFranco EA, et al. (2008) The genetics of birth timing: insights into a fundamental component of human development. Clin Genet 74: 493-501.
    • (2008) Clin Genet , vol.74 , pp. 493-501
    • Chaudhari, B.P.1    Plunkett, J.2    Ratajczak, C.K.3    Shen, T.T.4    DeFranco, E.A.5
  • 13
    • 48149115983 scopus 로고    scopus 로고
    • Population-based estimate of sibling risk for preterm birth, preterm premature rupture of membranes, placental abruption and pre-eclampsia
    • Plunkett J, Borecki I, Morgan T, Stamilio D, Muglia LJ, (2008) Population-based estimate of sibling risk for preterm birth, preterm premature rupture of membranes, placental abruption and pre-eclampsia. BMC Genet 9: 44.
    • (2008) BMC Genet , vol.9 , pp. 44
    • Plunkett, J.1    Borecki, I.2    Morgan, T.3    Stamilio, D.4    Muglia, L.J.5
  • 14
    • 66749088669 scopus 로고    scopus 로고
    • Mother's genome or maternally-inherited genes acting in the fetus influence gestational age in familial preterm birth
    • Plunkett J, Feitosa MF, Trusgnich M, Wangler MF, Palomar L, et al. (2009) Mother's genome or maternally-inherited genes acting in the fetus influence gestational age in familial preterm birth. Hum Hered 68: 209-219.
    • (2009) Hum Hered , vol.68 , pp. 209-219
    • Plunkett, J.1    Feitosa, M.F.2    Trusgnich, M.3    Wangler, M.F.4    Palomar, L.5
  • 15
    • 0001146660 scopus 로고
    • Relation of gestation time to brain weight for placental mammals: implications for the theory of vertebrate growth
    • Sacher GA, Staffeldt EF, (1974) Relation of gestation time to brain weight for placental mammals: implications for the theory of vertebrate growth. The American Naturalist 108: 593-615.
    • (1974) The American Naturalist , vol.108 , pp. 593-615
    • Sacher, G.A.1    Staffeldt, E.F.2
  • 16
    • 39349089231 scopus 로고    scopus 로고
    • Familial patterns of preterm delivery: maternal and fetal contributions
    • Wilcox AJ, Skaerven R, Lie RT, (2008) Familial patterns of preterm delivery: maternal and fetal contributions. Am J Epidemiol 167: 474-479.
    • (2008) Am J Epidemiol , vol.167 , pp. 474-479
    • Wilcox, A.J.1    Skaerven, R.2    Lie, R.T.3
  • 17
    • 38849117244 scopus 로고    scopus 로고
    • Evaluation of fetal and maternal genetic variation in the progesterone receptor gene for contributions to preterm birth
    • Ehn NL, Cooper ME, Orr K, Shi M, Johnson MK, et al. (2007) Evaluation of fetal and maternal genetic variation in the progesterone receptor gene for contributions to preterm birth. Pediatr Res 62: 630-635.
    • (2007) Pediatr Res , vol.62 , pp. 630-635
    • Ehn, N.L.1    Cooper, M.E.2    Orr, K.3    Shi, M.4    Johnson, M.K.5
  • 18
    • 8444220043 scopus 로고    scopus 로고
    • Functionally significant SNP MMP8 promoter haplotypes and preterm premature rupture of membranes (PPROM)
    • Wang H, Parry S, Macones G, Sammel MD, Ferrand PE, et al. (2004) Functionally significant SNP MMP8 promoter haplotypes and preterm premature rupture of membranes (PPROM). Hum Mol Genet 13: 2659-2669.
    • (2004) Hum Mol Genet , vol.13 , pp. 2659-2669
    • Wang, H.1    Parry, S.2    Macones, G.3    Sammel, M.D.4    Ferrand, P.E.5
  • 19
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R, (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440-9445.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 20
    • 33750737061 scopus 로고    scopus 로고
    • Accelerated evolution of conserved noncoding sequences in humans
    • Prabhakar S, Noonan JP, Paabo S, Rubin EM, (2006) Accelerated evolution of conserved noncoding sequences in humans. Science 314: 786.
    • (2006) Science , vol.314 , pp. 786
    • Prabhakar, S.1    Noonan, J.P.2    Paabo, S.3    Rubin, E.M.4
  • 23
    • 33644981509 scopus 로고    scopus 로고
    • A map of recent positive selection in the human genome
    • doi:10.1371/journal.pbio.0040072
    • Voight BF, Kudaravalli S, Wen X, Pritchard JK, (2006) A map of recent positive selection in the human genome. PLoS Biol 4: e72 doi:10.1371/journal.pbio.0040072.
    • (2006) PLoS Biol , vol.4 , pp. 72
    • Voight, B.F.1    Kudaravalli, S.2    Wen, X.3    Pritchard, J.K.4
  • 25
    • 64149118922 scopus 로고    scopus 로고
    • Mutations and polymorphisms of the FSH receptor (FSHR) gene: clinical implications in female fecundity and molecular biology of FSHR protein and gene
    • Lussiana C, Guani B, Mari C, Restagno G, Massobrio M, et al. (2008) Mutations and polymorphisms of the FSH receptor (FSHR) gene: clinical implications in female fecundity and molecular biology of FSHR protein and gene. Obstet Gynecol Surv 63: 785-795.
    • (2008) Obstet Gynecol Surv , vol.63 , pp. 785-795
    • Lussiana, C.1    Guani, B.2    Mari, C.3    Restagno, G.4    Massobrio, M.5
  • 26
    • 39149116712 scopus 로고    scopus 로고
    • Molecular pathology of the FSH receptor: new insights into FSH physiology
    • Meduri G, Bachelot A, Cocca MP, Vasseur C, Rodien P, et al. (2008) Molecular pathology of the FSH receptor: new insights into FSH physiology. Mol Cell Endocrinol 282: 130-142.
    • (2008) Mol Cell Endocrinol , vol.282 , pp. 130-142
    • Meduri, G.1    Bachelot, A.2    Cocca, M.P.3    Vasseur, C.4    Rodien, P.5
  • 27
    • 58549117470 scopus 로고    scopus 로고
    • Are adverse outcomes associated with assisted reproduction related to the technology or couples' subfertility?
    • Ludwig M, (2009) Are adverse outcomes associated with assisted reproduction related to the technology or couples' subfertility? Nat Clin Pract Urol 6: 8-9.
    • (2009) Nat Clin Pract Urol , vol.6 , pp. 8-9
    • Ludwig, M.1
  • 28
    • 50149106551 scopus 로고    scopus 로고
    • Effects of technology or maternal factors on perinatal outcome after assisted fertilisation: a population-based cohort study
    • Romundstad LB, Romundstad PR, Sunde A, von During V, Skjaerven R, et al. (2008) Effects of technology or maternal factors on perinatal outcome after assisted fertilisation: a population-based cohort study. Lancet 372: 737-743.
    • (2008) Lancet , vol.372 , pp. 737-743
    • Romundstad, L.B.1    Romundstad, P.R.2    Sunde, A.3    von During, V.4    Skjaerven, R.5
  • 29
    • 77950206777 scopus 로고    scopus 로고
    • Effects of highly purified urinary FSH and human menopausal FSH on Uterine Myoelectrical Dynamics
    • Hascalik S, Celik O, Tagluk ME, Yildirim A, Aydin NE, (2009) Effects of highly purified urinary FSH and human menopausal FSH on Uterine Myoelectrical Dynamics. Mol Hum Reprod.
    • (2009) Mol Hum Reprod
    • Hascalik, S.1    Celik, O.2    Tagluk, M.E.3    Yildirim, A.4    Aydin, N.E.5
  • 30
    • 0032799935 scopus 로고    scopus 로고
    • Follicle-stimulating hormone receptor and its messenger ribonucleic acid are present in the bovine cervix and can regulate cervical prostanoid synthesis
    • Mizrachi D, Shemesh M, (1999) Follicle-stimulating hormone receptor and its messenger ribonucleic acid are present in the bovine cervix and can regulate cervical prostanoid synthesis. Biol Reprod 61: 776-784.
    • (1999) Biol Reprod , vol.61 , pp. 776-784
    • Mizrachi, D.1    Shemesh, M.2
  • 31
    • 0035015965 scopus 로고    scopus 로고
    • Functional importance of bovine myometrial and vascular LH receptors and cervical FSH receptors
    • Shemesh M, Mizrachi D, Gurevich M, Stram Y, Shore LS, et al. (2001) Functional importance of bovine myometrial and vascular LH receptors and cervical FSH receptors. Semin Reprod Med 19: 87-96.
    • (2001) Semin Reprod Med , vol.19 , pp. 87-96
    • Shemesh, M.1    Mizrachi, D.2    Gurevich, M.3    Stram, Y.4    Shore, L.S.5
  • 32
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, et al. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3    Hinds, D.A.4    Stuve, L.L.5
  • 33
    • 33847296688 scopus 로고    scopus 로고
    • FSH stimulates ovarian cancer cell growth by action on growth factor variant receptor
    • Li Y, Ganta S, Cheng C, Craig R, Ganta RR, et al. (2007) FSH stimulates ovarian cancer cell growth by action on growth factor variant receptor. Mol Cell Endocrinol 267: 26-37.
    • (2007) Mol Cell Endocrinol , vol.267 , pp. 26-37
    • Li, Y.1    Ganta, S.2    Cheng, C.3    Craig, R.4    Ganta, R.R.5
  • 35
    • 0031457992 scopus 로고    scopus 로고
    • The follicle-stimulating hormone receptor: biochemistry, molecular biology, physiology, and pathophysiology
    • Simoni M, Gromoll J, Nieschlag E, (1997) The follicle-stimulating hormone receptor: biochemistry, molecular biology, physiology, and pathophysiology. Endocr Rev 18: 739-773.
    • (1997) Endocr Rev , vol.18 , pp. 739-773
    • Simoni, M.1    Gromoll, J.2    Nieschlag, E.3
  • 36
    • 0036721535 scopus 로고    scopus 로고
    • Emergence of uterine pathology during accelerated biological aging in FSH receptor-haploinsufficient mice
    • Danilovich N, Roy I, Sairam MR, (2002) Emergence of uterine pathology during accelerated biological aging in FSH receptor-haploinsufficient mice. Endocrinology 143: 3618-3627.
    • (2002) Endocrinology , vol.143 , pp. 3618-3627
    • Danilovich, N.1    Roy, I.2    Sairam, M.R.3
  • 37
    • 0037443035 scopus 로고    scopus 로고
    • Pre-mRNA splicing and human disease
    • Faustino NA, Cooper TA, (2003) Pre-mRNA splicing and human disease. Genes Dev 17: 419-437.
    • (2003) Genes Dev , vol.17 , pp. 419-437
    • Faustino, N.A.1    Cooper, T.A.2
  • 38
    • 0037899998 scopus 로고    scopus 로고
    • New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12
    • Pagani F, Stuani C, Tzetis M, Kanavakis E, Efthymiadou A, et al. (2003) New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12. Hum Mol Genet 12: 1111-1120.
    • (2003) Hum Mol Genet , vol.12 , pp. 1111-1120
    • Pagani, F.1    Stuani, C.2    Tzetis, M.3    Kanavakis, E.4    Efthymiadou, A.5
  • 39
    • 33750816604 scopus 로고    scopus 로고
    • Preterm Birth: Causes, Consequences, and Prevention;
    • Committee on Understanding Premature Birth and Assuring Healthy Outcomes, Washington D.C., The National Academies Press
    • Committee on Understanding Premature Birth and Assuring Healthy Outcomes (2006) Preterm Birth: Causes, Consequences, and Prevention; Behrman RE, Butler AS, eds. Washington D.C. The National Academies Press.
    • (2006)
    • Behrman, R.E.1    Butler, A.S.2
  • 40
    • 33748324384 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing: R Foundation for Stastical Computing
    • R Development Core Team
    • R Development Core Team (2009) R: A language and environment for statistical computing: R Foundation for Stastical Computing.
    • (2009)
  • 41
    • 0029653995 scopus 로고
    • A composite estimate of primate phylogeny
    • Purvis A, (1995) A composite estimate of primate phylogeny. Philos Trans R Soc Lond B Biol Sci 348: 405-421.
    • (1995) Philos Trans R Soc Lond B Biol Sci , vol.348 , pp. 405-421
    • Purvis, A.1
  • 42
    • 79955572076 scopus 로고    scopus 로고
    • Mesquite: a modular system for evolutionary analysis:. Accessed September 2010
    • Maddison W, Maddison D, (2009) Mesquite: a modular system for evolutionary analysis: http://mesquiteproject.org. Accessed September 2010.
    • (2009)
    • Maddison, W.1    Maddison, D.2
  • 45
    • 1542748076 scopus 로고    scopus 로고
    • Aligning multiple genomic sequences with the threaded blockset aligner
    • Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14: 708-715.
    • (2004) Genome Res , vol.14 , pp. 708-715
    • Blanchette, M.1    Kent, W.J.2    Riemer, C.3    Elnitski, L.4    Smit, A.F.5
  • 46
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: hypothesis testing using phylogenies
    • Pond SL, Frost SD, Muse SV, (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
    • (2005) Bioinformatics , vol.21 , pp. 676-679
    • Pond, S.L.1    Frost, S.D.2    Muse, S.V.3
  • 47
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
    • Muse SV, Gaut BS, (1994) A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol 11: 715-724.
    • (1994) Mol Biol Evol , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 48
    • 20444430245 scopus 로고    scopus 로고
    • A scan for positively selected genes in the genomes of humans and chimpanzees
    • doi:10.1371/journal.pbio.0030170
    • Nielsen R, Bustamante C, Clark AG, Glanowski S, Sackton TB, et al. (2005) A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol 3: e170 doi:10.1371/journal.pbio.0030170.
    • (2005) PLoS Biol , vol.3 , pp. 170
    • Nielsen, R.1    Bustamante, C.2    Clark, A.G.3    Glanowski, S.4    Sackton, T.B.5
  • 49
    • 33646244720 scopus 로고    scopus 로고
    • Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome
    • doi:10.1371/journal.pcbi.0020038
    • Arbiza L, Dopazo J, Dopazo H, (2006) Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome. PLoS Comput Biol 2: e38 doi:10.1371/journal.pcbi.0020038.
    • (2006) PLoS Comput Biol , vol.2 , pp. 38
    • Arbiza, L.1    Dopazo, J.2    Dopazo, H.3
  • 51
    • 34548299105 scopus 로고    scopus 로고
    • Risk alleles for multiple sclerosis identified by a genomewide study
    • Hafler DA, Compston A, Sawcer S, Lander ES, Daly MJ, et al. (2007) Risk alleles for multiple sclerosis identified by a genomewide study. N Engl J Med 357: 851-862.
    • (2007) N Engl J Med , vol.357 , pp. 851-862
    • Hafler, D.A.1    Compston, A.2    Sawcer, S.3    Lander, E.S.4    Daly, M.J.5
  • 52
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and population-based linkage analyses
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.5
  • 54
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3


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