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Volumn 14, Issue 1, 2013, Pages

Transcriptional profiling of the Arabidopsis abscission mutant hae hsl2 by RNA-Seq

Author keywords

[No Author keywords available]

Indexed keywords

HAESA LIKE 2 PROTEIN; HAESA PROTEIN; INFLORESCENCE DEFICIENT IN ABSCISSION PROTEIN; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

EID: 84872273599     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-37     Document Type: Article
Times cited : (76)

References (53)
  • 3
    • 0034989679 scopus 로고    scopus 로고
    • Cutting loose. Abscission and dehiscence in Arabidopsis
    • 10.1104/pp.126.2.494, 1540116, 11402180
    • Patterson SE. Cutting loose. Abscission and dehiscence in Arabidopsis. Plant Physiol 2001, 126(2):494-500. 10.1104/pp.126.2.494, 1540116, 11402180.
    • (2001) Plant Physiol , vol.126 , Issue.2 , pp. 494-500
    • Patterson, S.E.1
  • 4
    • 0037001930 scopus 로고    scopus 로고
    • Abscission, dehiscence, and other cell separation processes
    • 10.1146/annurev.arplant.53.092701.180236, 12221970
    • Roberts JA, Elliott KA, Gonzalez-Carranza ZH. Abscission, dehiscence, and other cell separation processes. Annu Rev Plant Biol 2002, 53:131-158. 10.1146/annurev.arplant.53.092701.180236, 12221970.
    • (2002) Annu Rev Plant Biol , vol.53 , pp. 131-158
    • Roberts, J.A.1    Elliott, K.A.2    Gonzalez-Carranza, Z.H.3
  • 5
    • 29544439923 scopus 로고    scopus 로고
    • Plant separation: 50 ways to leave your mother
    • 10.1016/j.pbi.2005.11.009, 16337172
    • Lewis MW, Leslie ME, Liljegren SJ. Plant separation: 50 ways to leave your mother. Curr Opin Plant Biol 2006, 9(1):59-65. 10.1016/j.pbi.2005.11.009, 16337172.
    • (2006) Curr Opin Plant Biol , vol.9 , Issue.1 , pp. 59-65
    • Lewis, M.W.1    Leslie, M.E.2    Liljegren, S.J.3
  • 6
    • 55749086044 scopus 로고    scopus 로고
    • Regulation of floral organ abscission in Arabidopsis thaliana
    • 10.1073/pnas.0805539105, 2563077, 18809915
    • Cho SK, Larue CT, Chevalier D, Wang H, Jinn T-L, Zhang S, Walker JC. Regulation of floral organ abscission in Arabidopsis thaliana. Proc Natl Acad Sci USA 2008, 105(40):15629-15634. 10.1073/pnas.0805539105, 2563077, 18809915.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.40 , pp. 15629-15634
    • Cho, S.K.1    Larue, C.T.2    Chevalier, D.3    Wang, H.4    Jinn, T.-L.5    Zhang, S.6    Walker, J.C.7
  • 7
    • 57749121939 scopus 로고    scopus 로고
    • The EPIP Peptide of INFLORESCENCE DEFICIENT IN ABSCISSION Is Sufficient to Induce Abscission in Arabidopsis through the Receptor-Like Kinases HAESA and HAESA-LIKE2
    • 10.1105/tpc.108.059139, 2518227, 18660431
    • Stenvik G, Tandstad N, Guo Y, Shi C. The EPIP Peptide of INFLORESCENCE DEFICIENT IN ABSCISSION Is Sufficient to Induce Abscission in Arabidopsis through the Receptor-Like Kinases HAESA and HAESA-LIKE2. Plant Cell 2008, 20(7):1805-1817. 10.1105/tpc.108.059139, 2518227, 18660431.
    • (2008) Plant Cell , vol.20 , Issue.7 , pp. 1805-1817
    • Stenvik, G.1    Tandstad, N.2    Guo, Y.3    Shi, C.4
  • 8
    • 0033957459 scopus 로고    scopus 로고
    • HAESA, an Arabidopsis leucine-rich repeat receptor kinase, controls floral organ abscission
    • 316334, 10640280
    • Jinn T-L, Stone JM, Walker JC. HAESA, an Arabidopsis leucine-rich repeat receptor kinase, controls floral organ abscission. Genes Dev 2000, 14(1):108-117. 316334, 10640280.
    • (2000) Genes Dev , vol.14 , Issue.1 , pp. 108-117
    • Jinn, T.-L.1    Stone, J.M.2    Walker, J.C.3
  • 9
    • 0142092370 scopus 로고    scopus 로고
    • INFLORESCENCE DEFICIENT IN ABSCISSION controls floral organ abscission in Arabidopsis and identifies a novel family of putative ligands in plants
    • 10.1105/tpc.014365, 197296, 12972671
    • Butenko MA, Patterson S, Grini P. INFLORESCENCE DEFICIENT IN ABSCISSION controls floral organ abscission in Arabidopsis and identifies a novel family of putative ligands in plants. Plant Cell 2003, 15(10):2296-2307. 10.1105/tpc.014365, 197296, 12972671.
    • (2003) Plant Cell , vol.15 , Issue.10 , pp. 2296-2307
    • Butenko, M.A.1    Patterson, S.2    Grini, P.3
  • 10
    • 0033927028 scopus 로고    scopus 로고
    • Analysis of gene promoters for two tomato polygalacturonases expressed in abscission zones and the stigma
    • 10.1104/pp.123.3.869, 59050, 10889236
    • Hong SB, Sexton R, Tucker ML. Analysis of gene promoters for two tomato polygalacturonases expressed in abscission zones and the stigma. Plant Physiol 2000, 123(3):869-881. 10.1104/pp.123.3.869, 59050, 10889236.
    • (2000) Plant Physiol , vol.123 , Issue.3 , pp. 869-881
    • Hong, S.B.1    Sexton, R.2    Tucker, M.L.3
  • 11
    • 43149100573 scopus 로고    scopus 로고
    • Silencing polygalacturonase expression inhibits tomato petiole abscission
    • 10.1093/jxb/ern023, 18316316
    • Jiang C-Z, Lu F, Imsabai W, Meir S, Reid MS. Silencing polygalacturonase expression inhibits tomato petiole abscission. J Exp Bot 2008, 59(4):973-979. 10.1093/jxb/ern023, 18316316.
    • (2008) J Exp Bot , vol.59 , Issue.4 , pp. 973-979
    • Jiang, C.-Z.1    Lu, F.2    Imsabai, W.3    Meir, S.4    Reid, M.S.5
  • 12
    • 38549144099 scopus 로고    scopus 로고
    • Ethylene induced cotton leaf abscission is associated with higher expression of cellulase (GhCel1) and increased activities of ethylene biosynthesis enzymes in abscission zone
    • 10.1016/j.plaphy.2007.09.002, 17964177
    • Mishra A, Khare S, Trivedi P, Nath P. Ethylene induced cotton leaf abscission is associated with higher expression of cellulase (GhCel1) and increased activities of ethylene biosynthesis enzymes in abscission zone. Plant Physiol Biochem 2008, 46(1):54-63. 10.1016/j.plaphy.2007.09.002, 17964177.
    • (2008) Plant Physiol Biochem , vol.46 , Issue.1 , pp. 54-63
    • Mishra, A.1    Khare, S.2    Trivedi, P.3    Nath, P.4
  • 13
    • 80054111113 scopus 로고    scopus 로고
    • Petal abscission in rose is associated with the differential expression of two ethylene-responsive xyloglucan endotransglucosylase/hydrolase genes, RbXTH1 and RbXTH2
    • 10.1093/jxb/err209, 3193013, 21765161
    • Singh AP, Tripathi SK, Nath P, Sane AP. Petal abscission in rose is associated with the differential expression of two ethylene-responsive xyloglucan endotransglucosylase/hydrolase genes, RbXTH1 and RbXTH2. J Exp Bot 2011, 62(14):5091-5103. 10.1093/jxb/err209, 3193013, 21765161.
    • (2011) J Exp Bot , vol.62 , Issue.14 , pp. 5091-5103
    • Singh, A.P.1    Tripathi, S.K.2    Nath, P.3    Sane, A.P.4
  • 14
    • 48949107734 scopus 로고    scopus 로고
    • Stamen abscission zone transcriptome profiling reveals new candidates for abscission control: enhanced retention of floral organs in transgenic plants overexpressing Arabidopsis ZINC FINGER PROTEIN2
    • 10.1104/pp.107.110908, 2259061, 18192438
    • Cai S, Lashbrook CC. Stamen abscission zone transcriptome profiling reveals new candidates for abscission control: enhanced retention of floral organs in transgenic plants overexpressing Arabidopsis ZINC FINGER PROTEIN2. Plant Physiol 2008, 146(3):1305-1321. 10.1104/pp.107.110908, 2259061, 18192438.
    • (2008) Plant Physiol , vol.146 , Issue.3 , pp. 1305-1321
    • Cai, S.1    Lashbrook, C.C.2
  • 15
    • 50949110334 scopus 로고    scopus 로고
    • Cell wall remodeling in Arabidopsis stamen abscission zones: Temporal aspects of control inferred from transcriptional profiling
    • 10.4161/psb.3.9.6489, 2634574, 19704843
    • Lashbrook CC, Cai S. Cell wall remodeling in Arabidopsis stamen abscission zones: Temporal aspects of control inferred from transcriptional profiling. Plant Signal Behav 2008, 3(9):733-736. 10.4161/psb.3.9.6489, 2634574, 19704843.
    • (2008) Plant Signal Behav , vol.3 , Issue.9 , pp. 733-736
    • Lashbrook, C.C.1    Cai, S.2
  • 16
    • 85047686658 scopus 로고    scopus 로고
    • Temporal and spatial expression of a polygalacturonase during leaf and flower abscission in oilseed rape and Arabidopsis
    • 10.1104/pp.010610, 148916, 11842157
    • Gonzalez-Carranza ZH, Whitelaw C, Swarup R, Roberts J. Temporal and spatial expression of a polygalacturonase during leaf and flower abscission in oilseed rape and Arabidopsis. Plant Physiol 2002, 128(2):534-543. 10.1104/pp.010610, 148916, 11842157.
    • (2002) Plant Physiol , vol.128 , Issue.2 , pp. 534-543
    • Gonzalez-Carranza, Z.H.1    Whitelaw, C.2    Swarup, R.3    Roberts, J.4
  • 17
    • 36849010233 scopus 로고    scopus 로고
    • Expression of polygalacturonases and evidence to support their role during cell separation processes in Arabidopsis thaliana
    • 10.1093/jxb/erm222, 17928369
    • Gonzalez-Carranza ZH, Elliott KA, Roberts JA. Expression of polygalacturonases and evidence to support their role during cell separation processes in Arabidopsis thaliana. J Exp Bot 2007, 58(13):3719-3730. 10.1093/jxb/erm222, 17928369.
    • (2007) J Exp Bot , vol.58 , Issue.13 , pp. 3719-3730
    • Gonzalez-Carranza, Z.H.1    Elliott, K.A.2    Roberts, J.A.3
  • 18
    • 62549093973 scopus 로고    scopus 로고
    • ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis
    • 10.1105/tpc.108.063768, 2648098, 19168715
    • Ogawa M, Kay P, Wilson S, Swain SM. ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis. Plant Cell 2009, 21(1):216-233. 10.1105/tpc.108.063768, 2648098, 19168715.
    • (2009) Plant Cell , vol.21 , Issue.1 , pp. 216-233
    • Ogawa, M.1    Kay, P.2    Wilson, S.3    Swain, S.M.4
  • 19
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams B, McCue K, Schaeffer L. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5(7):621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.2    McCue, K.3    Schaeffer, L.4
  • 20
    • 0025465516 scopus 로고
    • Early flower development in Arabidopsis
    • 159928, 2152125
    • Smyth DR, Bowman JL, Meyerowitz EM. Early flower development in Arabidopsis. Plant Cell 1990, 2:755-767. 159928, 2152125.
    • (1990) Plant Cell , vol.2 , pp. 755-767
    • Smyth, D.R.1    Bowman, J.L.2    Meyerowitz, E.M.3
  • 21
    • 77955504378 scopus 로고    scopus 로고
    • Statistical design and analysis of RNA sequencing data
    • 10.1534/genetics.110.114983, 2881125, 20439781
    • Auer PL, Doerge RW. Statistical design and analysis of RNA sequencing data. Genetics 2010, 185(2):405-416. 10.1534/genetics.110.114983, 2881125, 20439781.
    • (2010) Genetics , vol.185 , Issue.2 , pp. 405-416
    • Auer, P.L.1    Doerge, R.W.2
  • 22
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • 10.1186/gb-2010-11-10-r106, 3218662, 20979621
    • Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biol 2010, 11(10):R106. 10.1186/gb-2010-11-10-r106, 3218662, 20979621.
    • (2010) Genome Biol , vol.11 , Issue.10
    • Anders, S.1    Huber, W.2
  • 23
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology
    • 10.1038/75556, 3037419, 10802651, The Gene Ontology Consortium
    • The Gene Ontology Consortium Gene ontology: tool for the unification of biology. Nat Genet 2000, 25:25-29. 10.1038/75556, 3037419, 10802651, The Gene Ontology Consortium.
    • (2000) Nat Genet , vol.25 , pp. 25-29
  • 24
    • 77955690169 scopus 로고    scopus 로고
    • Three Arabidopsis fatty acyl-coenzyme a reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition
    • 10.1104/pp.110.158238, 2923872, 20571114
    • Domergue F, Vishwanath SJ, Joubes J, Ono J, Lee JA, Bourdon M, Alhattab R, Lowe C, Pascal S, Lessire R, Rowland O. Three Arabidopsis fatty acyl-coenzyme a reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol 2010, 153(4):1539-1554. 10.1104/pp.110.158238, 2923872, 20571114.
    • (2010) Plant Physiol , vol.153 , Issue.4 , pp. 1539-1554
    • Domergue, F.1    Vishwanath, S.J.2    Joubes, J.3    Ono, J.4    Lee, J.A.5    Bourdon, M.6    Alhattab, R.7    Lowe, C.8    Pascal, S.9    Lessire, R.10    Rowland, O.11
  • 25
    • 34248182280 scopus 로고    scopus 로고
    • The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis
    • 10.1105/tpc.106.048033, 1820950, 17259262
    • Beisson F, Li Y, Bonaventure G, Pollard M, Ohlrogge JB. The acyltransferase GPAT5 is required for the synthesis of suberin in seed coat and root of Arabidopsis. Plant Cell 2007, 19(1):351-368. 10.1105/tpc.106.048033, 1820950, 17259262.
    • (2007) Plant Cell , vol.19 , Issue.1 , pp. 351-368
    • Beisson, F.1    Li, Y.2    Bonaventure, G.3    Pollard, M.4    Ohlrogge, J.B.5
  • 26
    • 0035532141 scopus 로고    scopus 로고
    • Estimating the number of clusters in a data set via the gap statistic
    • Tibshirani R, Walther G, Hastle T. Estimating the number of clusters in a data set via the gap statistic. J Royal Stat Soc 2001, 63:411-423.
    • (2001) J Royal Stat Soc , vol.63 , pp. 411-423
    • Tibshirani, R.1    Walther, G.2    Hastle, T.3
  • 27
    • 0032144443 scopus 로고    scopus 로고
    • Ein4 And ERS2 are members of the putative ethylene receptor gene family in Arabidopsis
    • 144061, 9707532
    • Hua J, Sakai H, Nourizadeh S, Chen QG, Bleeker AB, Ecker JR, Meyerowitz EM. Ein4 And ERS2 are members of the putative ethylene receptor gene family in Arabidopsis. Plant Cell 1998, 10(8):1321-1332. 144061, 9707532.
    • (1998) Plant Cell , vol.10 , Issue.8 , pp. 1321-1332
    • Hua, J.1    Sakai, H.2    Nourizadeh, S.3    Chen, Q.G.4    Bleeker, A.B.5    Ecker, J.R.6    Meyerowitz, E.M.7
  • 28
    • 37749002560 scopus 로고    scopus 로고
    • Integrated signaling in flower senescence: an overview
    • 10.4161/psb.2.6.4991, 2634333, 19517004
    • Tripathi SK, Tuteja N. Integrated signaling in flower senescence: an overview. Plant Signal Behav 2007, 2(6):437-445. 10.4161/psb.2.6.4991, 2634333, 19517004.
    • (2007) Plant Signal Behav , vol.2 , Issue.6 , pp. 437-445
    • Tripathi, S.K.1    Tuteja, N.2
  • 29
    • 31344435396 scopus 로고    scopus 로고
    • Abscisic acid and callose: team players in defense against pathogens?
    • Flors V, Ton J, Jakab G, Mauch-Mani B. Abscisic acid and callose: team players in defense against pathogens?. J Phytopath 2005, 153:377-383.
    • (2005) J Phytopath , vol.153 , pp. 377-383
    • Flors, V.1    Ton, J.2    Jakab, G.3    Mauch-Mani, B.4
  • 30
    • 0344792038 scopus 로고
    • Formation of callose and lignin during leaf abscission
    • Poovaiah BW. Formation of callose and lignin during leaf abscission. Am J Bot 1974, 61(8):829-834.
    • (1974) Am J Bot , vol.61 , Issue.8 , pp. 829-834
    • Poovaiah, B.W.1
  • 31
    • 33845246333 scopus 로고    scopus 로고
    • Ethylene-dependent and -independent pathways controlling floral abscission are revealed to converge using promoter::reporter gene constructs in the ida abscission mutant
    • 10.1093/jxb/erl130, 16990374
    • Butenko MA, Stenvik G, Alm V, Saether B, Patterson S, Aailen RB. Ethylene-dependent and -independent pathways controlling floral abscission are revealed to converge using promoter::reporter gene constructs in the ida abscission mutant. J Exp Bot 2006, 57(14):3627-3637. 10.1093/jxb/erl130, 16990374.
    • (2006) J Exp Bot , vol.57 , Issue.14 , pp. 3627-3637
    • Butenko, M.A.1    Stenvik, G.2    Alm, V.3    Saether, B.4    Patterson, S.5    Aailen, R.B.6
  • 32
    • 63549123700 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase cascade and ethylene: signaling, biosynthesis, or both?
    • 10.1104/pp.108.132241, 2649397, 19109412
    • Hahn A, Harter K. Mitogen-activated protein kinase cascade and ethylene: signaling, biosynthesis, or both?. Plant Physiol 2009, 149(3):1207-1210. 10.1104/pp.108.132241, 2649397, 19109412.
    • (2009) Plant Physiol , vol.149 , Issue.3 , pp. 1207-1210
    • Hahn, A.1    Harter, K.2
  • 33
    • 16344390469 scopus 로고    scopus 로고
    • Phosphorylation of 1-aminocyclopropane-1-carboxylic acid synthase by MPK6, a stress-responsive mitogen-activated protein kinase, induces ethylene biosynthesis in Arabidopsis
    • 10.1105/tpc.015552, 412864, 15020743
    • Liu Y, Zhang S. Phosphorylation of 1-aminocyclopropane-1-carboxylic acid synthase by MPK6, a stress-responsive mitogen-activated protein kinase, induces ethylene biosynthesis in Arabidopsis. Plant Cell 2004, 16:897-907. 10.1105/tpc.015552, 412864, 15020743.
    • (2004) Plant Cell , vol.16 , pp. 897-907
    • Liu, Y.1    Zhang, S.2
  • 34
    • 39149095565 scopus 로고    scopus 로고
    • Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signaling
    • 10.1038/nature06543, 3488589, 18273012
    • Yoo SD, Cho YH, Tena G, Xiong Y, Sheen J. Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signaling. Nature 2008, 451:789-795. 10.1038/nature06543, 3488589, 18273012.
    • (2008) Nature , vol.451 , pp. 789-795
    • Yoo, S.D.1    Cho, Y.H.2    Tena, G.3    Xiong, Y.4    Sheen, J.5
  • 36
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. journal 2011, 17(1):10-12.
    • (2011) EMBnet. journal , vol.17 , Issue.1 , pp. 10-12
    • Martin, M.1
  • 37
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • 10.1093/bioinformatics/btp120, 2672628, 19289445
    • Trapnell C, Pachter L, Salzberg S. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25(9):1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
    • (2009) Bioinformatics , vol.25 , Issue.9 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.3
  • 39
    • 68549104404 scopus 로고    scopus 로고
    • 1000 Genome project data processing subgroup: the sequence alignment/map format and SAMtools
    • 10.1093/bioinformatics/btp352, 2723002, 19505943
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 1000 Genome project data processing subgroup: the sequence alignment/map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6    Marth, G.7    Abecasis, G.8    Durbin, R.9
  • 40
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • 10.1093/bioinformatics/btq033, 2832824, 20110278
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26(6):841-842. 10.1093/bioinformatics/btq033, 2832824, 20110278.
    • (2010) Bioinformatics , vol.26 , Issue.6 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 42
    • 77954299992 scopus 로고    scopus 로고
    • AgriGO: a GO analysis toolkit for the agricultural community
    • 2896167, 20435677
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 2010, 38(Web Server Issue):W64-70. 2896167, 20435677.
    • (2010) Nucleic Acids Res , vol.38 , Issue.WEB SERVER ISSUE
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 43
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000, 132:365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 44
    • 57749111976 scopus 로고    scopus 로고
    • Eleven golden rules of quantitative RT-PCR
    • 10.1105/tpc.108.061143, 2518243, 18664613
    • Udvardi MK, Czechowski T, Scheible W-R. Eleven golden rules of quantitative RT-PCR. Plant Cell 2008, 20(7):1736-1737. 10.1105/tpc.108.061143, 2518243, 18664613.
    • (2008) Plant Cell , vol.20 , Issue.7 , pp. 1736-1737
    • Udvardi, M.K.1    Czechowski, T.2    Scheible, W.-R.3
  • 45
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • 10.1104/pp.105.063743, 1203353, 16166256
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible W-R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 2005, 139(1):5-17. 10.1104/pp.105.063743, 1203353, 16166256.
    • (2005) Plant Physiol , vol.139 , Issue.1 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.-R.5
  • 46
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
    • 10.1006/meth.2001.1262, 11846609
    • Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method. Methods 2001, 25(4):402-408. 10.1006/meth.2001.1262, 11846609.
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 47
    • 84873477301 scopus 로고    scopus 로고
    • Array express http://www.ebi.ac.uk/arrayexpress/.
    • Array express
  • 50
    • 33644872577 scopus 로고    scopus 로고
    • Limma: linear models for microarray data
    • New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry WH
    • Smyth GK. Limma: linear models for microarray data. Bioinformatic and computational biology solutions using R and bioconductor 2005, 397-420. New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry WH.
    • (2005) Bioinformatic and computational biology solutions using R and bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 51
    • 3142756502 scopus 로고    scopus 로고
    • Open source clustering software
    • 10.1093/bioinformatics/bth078, 14871861
    • de Hoon MJL, Imoto S, Nolan J, Miyano S. Open source clustering software. Bioinformatics 2004, 20:1453-1454. 10.1093/bioinformatics/bth078, 14871861.
    • (2004) Bioinformatics , vol.20 , pp. 1453-1454
    • de Hoon, M.J.L.1    Imoto, S.2    Nolan, J.3    Miyano, S.4
  • 52
    • 0242391996 scopus 로고    scopus 로고
    • Venn Mapping: clustering of heterologous microarray data based on the number of co-occurring differentially expressed genes
    • 10.1093/bioinformatics/btg282, 14594711
    • Smid M, Dorssers LC, Jenster G. Venn Mapping: clustering of heterologous microarray data based on the number of co-occurring differentially expressed genes. Bioinformatics 2003, 19(16):2065-2071. 10.1093/bioinformatics/btg282, 14594711.
    • (2003) Bioinformatics , vol.19 , Issue.16 , pp. 2065-2071
    • Smid, M.1    Dorssers, L.C.2    Jenster, G.3
  • 53
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • 10.1093/nar/30.1.207, 99122, 11752295
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002, 30:207-210. 10.1093/nar/30.1.207, 99122, 11752295.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.