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Volumn 55, Issue 6, 2012, Pages 458-468

Genome-wide identification and analysis of early heat stress responsive genes in rice

Author keywords

Early heat stress response; Microarray; Multiple abiotic stress responses; Prolonged heat stress response; Rice

Indexed keywords


EID: 84872273003     PISSN: 12269239     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12374-012-0271-z     Document Type: Article
Times cited : (44)

References (48)
  • 3
    • 12744274644 scopus 로고    scopus 로고
    • Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana
    • Busch W, Wunderlich M, Schoffl F (2005) Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. Plant J 41: 1-14.
    • (2005) Plant J , vol.41 , pp. 1-14
    • Busch, W.1    Wunderlich, M.2    Schoffl, F.3
  • 4
    • 84865147387 scopus 로고    scopus 로고
    • The Rice Oligonucleotide Array Database: an atlas of rice gene expression
    • doi: 10. 1186/1939-8433-1185-1117
    • Cao P, Jung KH, Choi D, Hwang D, Zhu J, Ronald PC (2012) The Rice Oligonucleotide Array Database: an atlas of rice gene expression. Rice 5: doi: 10. 1186/1939-8433-1185-1117.
    • (2012) Rice , vol.5
    • Cao, P.1    Jung, K.H.2    Choi, D.3    Hwang, D.4    Zhu, J.5    Ronald, P.C.6
  • 6
    • 49049104614 scopus 로고    scopus 로고
    • MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
    • Chu VT, Gottardo R, Raftery AE, Bumgarner RE, Yeung KY (2008) MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis. Genome Biol 9: R118.
    • (2008) Genome Biol , vol.9
    • Chu, V.T.1    Gottardo, R.2    Raftery, A.E.3    Bumgarner, R.E.4    Yeung, K.Y.5
  • 7
    • 0036092023 scopus 로고    scopus 로고
    • Systematic structure-function analysis of the small GTPase Arf1 in yeast
    • Click ES, Stearns T, Botstein D (2002) Systematic structure-function analysis of the small GTPase Arf1 in yeast. Mol Biol Cell 13: 1652-1664.
    • (2002) Mol Biol Cell , vol.13 , pp. 1652-1664
    • Click, E.S.1    Stearns, T.2    Botstein, D.3
  • 8
    • 77954299992 scopus 로고    scopus 로고
    • agriGO: a GO analysis toolkit for the agricultural community
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 38: W64-70.
    • (2010) Nucleic Acids Res , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 9
    • 25844468618 scopus 로고    scopus 로고
    • Redox homeostasis and antioxidant signaling: a metabolic interface between stress perception and physiological responses
    • Foyer CH, Noctor G (2005) Redox homeostasis and antioxidant signaling: a metabolic interface between stress perception and physiological responses. Plant Cell 17: 1866-1875.
    • (2005) Plant Cell , vol.17 , pp. 1866-1875
    • Foyer, C.H.1    Noctor, G.2
  • 11
    • 84871297170 scopus 로고    scopus 로고
    • Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants
    • doi: 10. 1111/j. 1399-3054. 2012. 01635. x
    • Fujita Y, Yoshida T, Yamaguchi-Shinozaki K (2012) Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants. Physiol Plant doi: 10. 1111/j. 1399-3054. 2012. 01635. x.
    • (2012) Physiol Plant
    • Fujita, Y.1    Yoshida, T.2    Yamaguchi-Shinozaki, K.3
  • 12
    • 0035824621 scopus 로고    scopus 로고
    • Evidence for a mechanism of repression of heat shock factor 1 transcriptional activity by a multichaperone complex
    • Guo Y, Guettouche T, Fenna M, Boellmann F, Pratt WB, Toft DO, Smith DF, Voellmy R (2001) Evidence for a mechanism of repression of heat shock factor 1 transcriptional activity by a multichaperone complex. J Biol Chem 276: 45791-45799.
    • (2001) J Biol Chem , vol.276 , pp. 45791-45799
    • Guo, Y.1    Guettouche, T.2    Fenna, M.3    Boellmann, F.4    Pratt, W.B.5    Toft, D.O.6    Smith, D.F.7    Voellmy, R.8
  • 13
    • 79953076341 scopus 로고    scopus 로고
    • Crosstalk between Hsp90 and Hsp70 chaperones and heat stress transcription factors in tomato
    • Hahn A, Bublak D, Schleiff E, Scharf KD (2011) Crosstalk between Hsp90 and Hsp70 chaperones and heat stress transcription factors in tomato. Plant Cell 23: 741-755.
    • (2011) Plant Cell , vol.23 , pp. 741-755
    • Hahn, A.1    Bublak, D.2    Schleiff, E.3    Scharf, K.D.4
  • 14
    • 33947428564 scopus 로고    scopus 로고
    • Consideration of crop response to environment in plant breeding
    • Boca Raton, FL: CRC Press LLC
    • Hall AE (2001) Consideration of crop response to environment in plant breeding. In: Crop Response to Environment. CRC Press LLC, Boca Raton, FL.
    • (2001) Crop Response to Environment
    • Hall, A.E.1
  • 15
    • 77449085505 scopus 로고    scopus 로고
    • The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice
    • Hossain MA, Lee Y, Cho JI, Ahn CH, Lee SK, Jeon JS, Kang H, Lee CH, An G, Park PB (2010) The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice. Plant Mol Biol 72: 557-566.
    • (2010) Plant Mol Biol , vol.72 , pp. 557-566
    • Hossain, M.A.1    Lee, Y.2    Cho, J.I.3    Ahn, C.H.4    Lee, S.K.5    Jeon, J.S.6    Kang, H.7    Lee, C.H.8    An, G.9    Park, P.B.10
  • 16
    • 60449106705 scopus 로고    scopus 로고
    • Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice
    • Hu WH, Hu GC, Han B (2009) Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice. Plant Sci 176: 583-590.
    • (2009) Plant Sci , vol.176 , pp. 583-590
    • Hu, W.H.1    Hu, G.C.2    Han, B.3
  • 17
    • 56749119080 scopus 로고    scopus 로고
    • Climate change and its impacts in the near and long term under different scenarios
    • IPCCThe Core Writing Team, Geneva, Switzerland: IPCC
    • IPCC (2007). Climate change and its impacts in the near and long term under different scenarios. In Climate Change 2007: Synthesis Report (Eds The Core Writing Team, R. K. Pachauri & A. Reisinger), IPCC, Geneva, Switzerland.
    • (2007) Climate Change 2007: Synthesis Report
    • Pachauri, R.K.1    Reisinger, A.2
  • 18
    • 84856602052 scopus 로고    scopus 로고
    • Spikelet Proteomic Response to Combined Water Deficit and Heat Stress in Rice (Oryza sativa cv. N22)
    • Jagadish SVK, Muthurajan R, Rang ZW, Malo R, Heuer S, Bennett J, Craufurd PQ (2011) Spikelet Proteomic Response to Combined Water Deficit and Heat Stress in Rice (Oryza sativa cv. N22). Rice 4: 1-11.
    • (2011) Rice , vol.4 , pp. 1-11
    • Jagadish, S.V.K.1    Muthurajan, R.2    Rang, Z.W.3    Malo, R.4    Heuer, S.5    Bennett, J.6    Craufurd, P.Q.7
  • 19
    • 34249819663 scopus 로고    scopus 로고
    • F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress
    • Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol 143: 1467-1483.
    • (2007) Plant Physiol , vol.143 , pp. 1467-1483
    • Jain, M.1    Nijhawan, A.2    Arora, R.3    Agarwal, P.4    Ray, S.5    Sharma, P.6    Kapoor, S.7    Tyagi, A.K.8    Khurana, J.P.9
  • 22
    • 34247200577 scopus 로고    scopus 로고
    • The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
    • Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J 50: 347-363.
    • (2007) Plant J , vol.50 , pp. 347-363
    • Kilian, J.1    Whitehead, D.2    Horak, J.3    Wanke, D.4    Weinl, S.5    Batistic, O.6    D'Angelo, C.7    Bornberg-Bauer, E.8    Kudla, J.9    Harter, K.10
  • 23
    • 70450270615 scopus 로고    scopus 로고
    • High Temperature Induced Alterations in the Photosynthetic Electron Transport Activities of the Spheroplasts of Synechococcus 6301
    • Kiranmai K, Murthy SDS (2008) High Temperature Induced Alterations in the Photosynthetic Electron Transport Activities of the Spheroplasts of Synechococcus 6301. Vegetos 21: 29-33.
    • (2008) Vegetos , vol.21 , pp. 29-33
    • Kiranmai, K.1    Murthy, S.D.S.2
  • 24
    • 26944443125 scopus 로고    scopus 로고
    • Heat stress phenotypes of Arabidopsis mutants implicate multiple signaling pathways in the acquisition of thermotolerance
    • Larkindale J, Hall JD, Knight MR, Vierling E (2005) Heat stress phenotypes of Arabidopsis mutants implicate multiple signaling pathways in the acquisition of thermotolerance. Plant Physiol 138: 882-897.
    • (2005) Plant Physiol , vol.138 , pp. 882-897
    • Larkindale, J.1    Hall, J.D.2    Knight, M.R.3    Vierling, E.4
  • 25
    • 38949208025 scopus 로고    scopus 로고
    • Core genome responses involved in acclimation to high temperature
    • Larkindale J, Vierling E (2008) Core genome responses involved in acclimation to high temperature. Plant Physiol 146: 748-761.
    • (2008) Plant Physiol , vol.146 , pp. 748-761
    • Larkindale, J.1    Vierling, E.2
  • 27
    • 79551517326 scopus 로고    scopus 로고
    • Transcriptome Analysis of High-Temperature Stress in Developing Barley Caryopses: Early Stress Responses and Effects on Storage Compound Biosynthesis
    • Mangelsen E, Kilian J, Harter K, Jansson C, Wanke D, Sundberg E (2011) Transcriptome Analysis of High-Temperature Stress in Developing Barley Caryopses: Early Stress Responses and Effects on Storage Compound Biosynthesis. Mol Plant 4: 97-115.
    • (2011) Mol Plant , vol.4 , pp. 97-115
    • Mangelsen, E.1    Kilian, J.2    Harter, K.3    Jansson, C.4    Wanke, D.5    Sundberg, E.6
  • 28
    • 67649506184 scopus 로고    scopus 로고
    • Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses
    • Mittal D, Chakrabarti S, Sarkar A, Singh A, Grover A (2009) Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. Plant Physiol Biochem 47: 785-795.
    • (2009) Plant Physiol Biochem , vol.47 , pp. 785-795
    • Mittal, D.1    Chakrabarti, S.2    Sarkar, A.3    Singh, A.4    Grover, A.5
  • 29
    • 84864015961 scopus 로고    scopus 로고
    • Genome-Wide Transcriptional Profiles during Temperature and Oxidative Stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice
    • Mittal D, Madhyastha DA, Grover A (2012) Genome-Wide Transcriptional Profiles during Temperature and Oxidative Stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice. PLoS ONE 7: e40899.
    • (2012) PLoS ONE , vol.7
    • Mittal, D.1    Madhyastha, D.A.2    Grover, A.3
  • 30
    • 84872286012 scopus 로고    scopus 로고
    • Development of a three-dimensional simulator for rice growth and development. II. Accuracy of a rice phenology model to simulate heading stage and plant age in leaf number
    • Nakagawa H, Takahashi W, Hasegawa T, Watanabe T, Horie T (2001) Development of a three-dimensional simulator for rice growth and development. II. Accuracy of a rice phenology model to simulate heading stage and plant age in leaf number. Japan J Crop Sci 70: 125-126.
    • (2001) Japan J Crop Sci , vol.70 , pp. 125-126
    • Nakagawa, H.1    Takahashi, W.2    Hasegawa, T.3    Watanabe, T.4    Horie, T.5
  • 31
    • 58449091869 scopus 로고    scopus 로고
    • Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses
    • Nakashima K, Ito Y, Yamaguchi-Shinozaki K (2009) Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses. Plant Physiol 149: 88-95.
    • (2009) Plant Physiol , vol.149 , pp. 88-95
    • Nakashima, K.1    Ito, Y.2    Yamaguchi-Shinozaki, K.3
  • 32
    • 67349140658 scopus 로고    scopus 로고
    • Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice
    • Ouyang Y, Chen J, Xie W, Wang L, Zhang Q (2009) Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice. Plant Mol Biol 70: 341-357.
    • (2009) Plant Mol Biol , vol.70 , pp. 341-357
    • Ouyang, Y.1    Chen, J.2    Xie, W.3    Wang, L.4    Zhang, Q.5
  • 34
    • 0142075876 scopus 로고    scopus 로고
    • Molecular chaperones, stress proteins and redox homeostasis (Reprinted from Thiol metabolism and Redox Regulation of Cellular Functions)
    • Papp E, Nardai G, Soti C, Csermely P (2003) Molecular chaperones, stress proteins and redox homeostasis (Reprinted from Thiol metabolism and Redox Regulation of Cellular Functions). Biofactors 17: 249-257.
    • (2003) Biofactors , vol.17 , pp. 249-257
    • Papp, E.1    Nardai, G.2    Soti, C.3    Csermely, P.4
  • 36
    • 85016378085 scopus 로고    scopus 로고
    • Impact of high-temperature stress on rice plant and its traits related to tolerance
    • Shah F, Huang J, Cui K, Nie L, Shah T, Chen C, Wang K (2011) Impact of high-temperature stress on rice plant and its traits related to tolerance. J Agric Sci 149: 545-556.
    • (2011) J Agric Sci , vol.149 , pp. 545-556
    • Shah, F.1    Huang, J.2    Cui, K.3    Nie, L.4    Shah, T.5    Chen, C.6    Wang, K.7
  • 37
    • 34347265817 scopus 로고    scopus 로고
    • Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways
    • Swindell WR, Huebner M, Weber AP (2007) Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways. BMC Genomics 8: 125.
    • (2007) BMC Genomics , vol.8 , pp. 125
    • Swindell, W.R.1    Huebner, M.2    Weber, A.P.3
  • 38
    • 84860681900 scopus 로고    scopus 로고
    • Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice
    • Todaka D, Nakashima K, Shinozaki K, Yamaguchi-Shinozaki K (2012) Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice. Rice 5: 20.
    • (2012) Rice , vol.5 , pp. 20
    • Todaka, D.1    Nakashima, K.2    Shinozaki, K.3    Yamaguchi-Shinozaki, K.4
  • 39
    • 0035434974 scopus 로고    scopus 로고
    • Characterization of high temperature induced stress impairments in thylakoids of rice seedlings
    • Vani B, Saradhi PP, Mohanty P (2001) Characterization of high temperature induced stress impairments in thylakoids of rice seedlings. Indian J Biochem Biophys 8: 220-229.
    • (2001) Indian J Biochem Biophys , vol.8 , pp. 220-229
    • Vani, B.1    Saradhi, P.P.2    Mohanty, P.3
  • 42
    • 79952609541 scopus 로고    scopus 로고
    • Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
    • Wang D, Pan Y, Zhao X, Zhu L, Fu B, Li Z (2011) Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice. BMC genomics 12: 149.
    • (2011) BMC Genomics , vol.12 , pp. 149
    • Wang, D.1    Pan, Y.2    Zhao, X.3    Zhu, L.4    Fu, B.5    Li, Z.6
  • 43
    • 2442445139 scopus 로고    scopus 로고
    • Role of plant heatshock proteins and molecular chaperones in the abiotic stress response
    • Wang W, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heatshock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9: 244-252.
    • (2004) Trends Plant Sci , vol.9 , pp. 244-252
    • Wang, W.1    Vinocur, B.2    Shoseyov, O.3    Altman, A.4
  • 44
    • 77952372522 scopus 로고    scopus 로고
    • Atlas of Rice Grain Filling-Related Metabolism under High Temperature: Joint Analysis of Metabolome and Transcriptome Demonstrated Inhibition of Starch Accumulation and Induction of Amino Acid Accumulation
    • Yamakawa H, Hakata M (2010) Atlas of Rice Grain Filling-Related Metabolism under High Temperature: Joint Analysis of Metabolome and Transcriptome Demonstrated Inhibition of Starch Accumulation and Induction of Amino Acid Accumulation. Plant Cell Physiol 51: 795-809.
    • (2010) Plant Cell Physiol , vol.51 , pp. 795-809
    • Yamakawa, H.1    Hakata, M.2
  • 45
    • 34250684884 scopus 로고    scopus 로고
    • Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray
    • Yamakawa H, Hirose T, Kuroda M, Yamaguchi T (2007) Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray. Plant Physiol 144: 258-277.
    • (2007) Plant Physiol , vol.144 , pp. 258-277
    • Yamakawa, H.1    Hirose, T.2    Kuroda, M.3    Yamaguchi, T.4
  • 47
    • 65249125743 scopus 로고    scopus 로고
    • Molecular and genetic evidence for the key role of AtCaM3 in heat-shock signal transduction in Arabidopsis
    • Zhang W, Zhou RG, Gao YJ, Zheng SZ, Xu P, Zhang SQ, Sun DY (2009) Molecular and genetic evidence for the key role of AtCaM3 in heat-shock signal transduction in Arabidopsis. Plant Physiol 149: 1773-1784.
    • (2009) Plant Physiol , vol.149 , pp. 1773-1784
    • Zhang, W.1    Zhou, R.G.2    Gao, Y.J.3    Zheng, S.Z.4    Xu, P.5    Zhang, S.Q.6    Sun, D.Y.7
  • 48
    • 0032555685 scopus 로고    scopus 로고
    • Repression of heat shock transcription factor HSF1 activation by HSP90 (HSP90 complex) that forms a stress-sensitive complex with HSF1
    • Zou J, Guo Y, Guettouche T, Smith DF, Voellmy R (1998) Repression of heat shock transcription factor HSF1 activation by HSP90 (HSP90 complex) that forms a stress-sensitive complex with HSF1. Cell 94: 471-480.
    • (1998) Cell , vol.94 , pp. 471-480
    • Zou, J.1    Guo, Y.2    Guettouche, T.3    Smith, D.F.4    Voellmy, R.5


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