pAUL: A Gateway-Based Vector System for Adaptive Expression and Flexible Tagging of Proteins in Arabidopsis

PLoS ONE

Volumn 8, Issue 1, 2013, Pages

  Lyska, Dagmar ^a,b   Engelmann, Kerstin ^a   Meierhoff, Karin ^a   Westhoff, Peter ^a  

^a HEINRICH HEINE UNIVERSITY   (Germany)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN;

ARABIDOPSIS; ARTICLE; BIOGENESIS; CHLOROPLAST; CLONING VECTOR; EXPRESSION VECTOR; HCF107 GENE; HCF136 GENE; HCF173 GENE; NONHUMAN; PLANT GENE; PROMOTER REGION; PROTEIN EXPRESSION; PROTEIN FUNCTION; STRUCTURE ANALYSIS;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CHLOROPLASTS; EPITOPES; EUKARYOTIC INITIATION FACTORS; GENE EXPRESSION REGULATION, PLANT; GENETIC VECTORS; MEMBRANE PROTEINS; PROMOTER REGIONS, GENETIC; PROTEINS;

ARABIDOPSIS;

EID: 84872255673     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0053787     Document Type: Article

References (37)

1. Pang SZ, DeBoer DL, Wan Y, Ye G, Layton JG, et al. (1996) An improved green fluorescent protein gene as a vital marker in plants. Plant Physiol 112: 893-900.
2. Field J, Nikawa J, Broek D, MacDonald B, Rodgers L, et al. (1988) Purification of a RAS-responsive adenylyl cyclase complex from Saccharomyces cerevisiae by use of an epitope addition method. Mol Cell Biol 8: 2159-2165.
3. Landy A, (1989) Dynamic, structural, and regulatory aspects of lambda site-specific recombination. Annu Rev Biochem 58: 913-949.
4. Karimi M, Depicker A, Hilson P, (2007) Recombinational cloning with plant gateway vectors. Plant Physiol 145: 1144-1154.
5. Odell JT, Nagy F, Chua NH, (1985) Identification of DNA sequences required for activity of the cauliflower mosaic virus 35 S promoter. Nature 313: 810-812.
6. Depicker A, Stachel S, Dhaese P, Zambryski P, Goodman HM, (1982) Nopaline synthase: transcript mapping and DNA sequence. J Mol Appl Genet 1: 561-573.
7. Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, et al. (2005) An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. Plant J 41: 767-778.
8. Laufs P, Coen E, Kronenberger J, Traas J, Doonan J, (2003) Separable roles of UFO during floral development revealed by conditional restoration of gene function. Development 130: 785-796.
9. Felder S, Meierhoff K, Sane AP, Meurer J, Driemel C, et al. (2001) The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts. Plant Cell 13: 2127-2141.
10. Sane AP, Stein B, Westhoff P, (2005) The nuclear gene HCF107 encodes a membrane-associated R-TPR (RNA tetratricopeptide repeat)-containing protein involved in expression of the plastidial psbH gene in Arabidopsis. Plant J 42: 720-730.
11. Meurer J, Plucken H, Kowallik KV, Westhoff P, (1998) A nuclear-encoded protein of prokaryotic origin is essential for the stability of photosystem II in Arabidopsis thaliana. Embo J 17: 5286-5297.
12. Schult K, Meierhoff K, Paradies S, Toller T, Wolff P, et al. (2007) The nuclear-encoded factor HCF173 is involved in the initiation of translation of the psbA mRNA in Arabidopsis thaliana. Plant Cell 19: 1329-1346.
13. Junttila MR, Saarinen S, Schmidt T, Kast J, Westermarck J, (2005) Single-step Strep-tag purification for the isolation and identification of protein complexes from mammalian cells. Proteomics 5: 1199-1203.
14. Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, et al. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030-1032.
15. Xu X, Song Y, Li Y, Chang J, Zhang H, et al. (2010) The tandem affinity purification method: an efficient system for protein complex purification and protein interaction identification. Protein Expr Purif 72: 149-156.
16. Rohila JS, Chen M, Cerny R, Fromm ME, (2004) Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant J 38: 172-181.
17. Lyska D, Paradies S, Meierhoff K, Westhoff P, (2007) HCF208, a homolog of Chlamydomonas CCB2, is required for accumulation of native cytochrome b6 in Arabidopsis thaliana. Plant Cell Physiol 48: 1737-1746.
18. Kuras R, Saint-Marcoux D, Wollman FA, de Vitry C, (2007) A specific c-type cytochrome maturation system is required for oxygenic photosynthesis. Proc Natl Acad Sci U S A 104: 9906-9910.
19. Lezhneva L, Kuras R, Ephritikhine G, de Vitry C, (2008) A novel pathway of cytochrome c biogenesis is involved in the assembly of the cytochrome b6f complex in arabidopsis chloroplasts. J Biol Chem 283: 24608-24616.
20. Saint-Marcoux D, Wollman FA, de Vitry C, (2009) Biogenesis of cytochrome b6 in photosynthetic membranes. J Cell Biol 185: 1195-1207.
21. Curtis MD, Grossniklaus U, (2003) A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol 133: 462-469.
22. Sato MH, Wada Y, (1997) Universal template plasmid for introduction of the triple-HA epitope sequence into cloned genes. Biotechniques 23: 254-256.
23. Jefferson RA, (1987) Assaying chimeric genes in plants: The GUS gene fusion system. Plant Mol Biol Rep 5: 387-405.
24. Clough SJ, Bent AF, (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
25. Murashige T, Skoog F, (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant 15: 473-497.
26. Jefferson RA, Kavanagh TA, Bevan MW, (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6: 3901-3907.
27. Kosugi S, Ohashi Y, Nakajima K, Arai Y, (1990) An improved assay for beta-glucuronidase in transformed cells; Methanol almost completely suppresses a putative endogenous beta-glucuronidase activity. Plant Sci 70: 133-140.
28. Shen Y, Khanna R, Carle CM, Quail PH, (2007) Phytochrome induces rapid PIF5 phosphorylation and degradation in response to red-light activation. Plant Physiol 145: 1043-1051.
29. Schagger H, von Jagow G, (1987) Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem 166: 368-379.
30. Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W, (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136: 2621-2632.
31. Smith SM, Fulton DC, Chia T, Thorneycroft D, Chapple A, et al. (2004) Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptional and posttranscriptional regulation of starch metabolism in Arabidopsis leaves. Plant Physiol 136: 2687-2699.
32. Battraw MJ, Hall TC, (1990) Histochemical analysis of CaMV 35 S promoter-beta-glucuronidase gene expression in transgenic rice plants. Plant Mol Biol 15: 527-538.
33. van Leeuwen W, Ruttink T, Borst-Vrenssen AW, van der Plas LH, van der Krol AR, (2001) Characterization of position-induced spatial and temporal regulation of transgene promoter activity in plants. J Exp Bot 52: 949-959.
34. Daxinger L, Hunter B, Sheikh M, Jauvion V, Gasciolli V, et al. (2008) Unexpected silencing effects from T-DNA tags in Arabidopsis. Trends Plant Sci 13: 4-6.
35. Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, et al. (2007) An "Electronic Fluorescent Pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS One 2: e718.
36. Genty B, Briantais JM, Baker NR, (1989) The relationship between quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochim Biophys Acta 990: 87-92.
37. Stoppel R, Manavski N, Schein A, Schuster G, Teubner M, et al. (2012) RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast. Nucleic Acids Res 40: 8593-8606.