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Volumn 53, Issue 1, 2013, Pages 95-105

Potential of genomic selection for mass selection breeding in annual allogamous crops

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EID: 84872178658     PISSN: 0011183X     EISSN: 14350653     Source Type: Journal    
DOI: 10.2135/cropsci2012.03.0167     Document Type: Article
Times cited : (25)

References (38)
  • 1
    • 34648829225 scopus 로고    scopus 로고
    • Linkage disequilibrium in synthetic varieties of perennial ryegrass
    • doi:10.1007/s00122-007-0612-3
    • Auzanneau, J., C. Huyghe, B. Julier, and P. Barre. 2007. Linkage disequilibrium in synthetic varieties of perennial ryegrass. Theor. Appl. Genet. 115:837-847. doi:10.1007/s00122-007-0612-3
    • (2007) Theor. Appl. Genet. , vol.115 , pp. 837-847
    • Auzanneau, J.1    Huyghe, C.2    Julier, B.3    Barre, P.4
  • 2
    • 63149172767 scopus 로고    scopus 로고
    • GenomewiDe selection for rapid introgression of exotic germplasm in maize
    • doi:10.2135/cropsci2008.08.0452
    • Bernardo, R. 2009. GenomewiDe selection for rapid introgression of exotic germplasm in maize. Crop Sci. 49:419-425. doi:10.2135/cropsci2008.08.0452
    • (2009) Crop Sci. , vol.49 , pp. 419-425
    • Bernardo, R.1
  • 3
    • 34548176501 scopus 로고    scopus 로고
    • Prospect for genomewiDe selection for quantitative traits in maize
    • doi:10.2135/cropsci2006.11.0690
    • Bernardo, R., and J. Yu. 2007. Prospect for genomewiDe selection for quantitative traits in maize. Crop Sci. 47:1082-1090. doi:10.2135/cropsci2006.11.0690
    • (2007) Crop Sci. , vol.47 , pp. 1082-1090
    • Bernardo, R.1    Yu, J.2
  • 5
    • 84990166749 scopus 로고
    • An analysis of the economic potential of some innovations in a wheat breeding programme
    • doi:10.1111/j.1467-8489.1989.tb00480.x
    • Brennan, J.P. 1989. An analysis of the economic potential of some innovations in a wheat breeding programme. Aust. J. Agric. Econ. 33:48-55. doi:10.1111/j.1467-8489.1989.tb00480.x
    • (1989) Aust. J. Agric. Econ. , vol.33 , pp. 48-55
    • Brennan, J.P.1
  • 6
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-bysequencing (GBS) approach for high diversity species
    • doi:10.1371/journal.pone.0019379
    • Elshire, R.J., J.C. Glaubitz, Q. Sun, J.A. Poland, K. Kawamoto, E.S. Buckler, and S.E. Mitchell. 2011. A robust, simple genotyping-bysequencing (GBS) approach for high diversity species. PLoS ONE 6:e19379. doi:10.1371/journal.pone.0019379
    • (2011) PLoS ONE , vol.6
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3    Poland, J.A.4    Kawamoto, K.5    Buckler, E.S.6    Mitchell, S.E.7
  • 7
    • 78650289433 scopus 로고    scopus 로고
    • NucleotiDe diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)
    • doi:10.1016/j.plantsci.2010.08.015
    • Fiil, A., I. Lenk, K. Petersen, C.S. Jensen, K.K. Nielsen, B. Schejbel, J.R. Andersen, and T. Lubberstedt. 2011. NucleotiDe diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.). Plant Sci. 180:228-237. doi:10.1016/j.plantsci.2010.08.015
    • (2011) Plant Sci. , vol.180 , pp. 228-237
    • Fiil, A.1    Lenk, I.2    Petersen, K.3    Jensen, C.S.4    Nielsen, K.K.5    Schejbel, B.6    Andersen, J.R.7    Lubberstedt, T.8
  • 8
    • 0142135662 scopus 로고    scopus 로고
    • Structure of linkage disequilibrium in plants
    • doi:10.1146/annurev.arplant.54.031902.134907
    • Flint-Garcia, S.A., J.M. Thornsberry, and E.S. Buckler, IV. 2003. Structure of linkage disequilibrium in plants. Annu. Rev. Plant Biol. 54:357-374. doi:10.1146/annurev.arplant.54.031902.134907
    • (2003) Annu. Rev. Plant Biol. , vol.54 , pp. 357-374
    • Flint-Garcia, S.A.1    Thornsberry, J.M.2    Buckler IV, E.S.3
  • 9
    • 77950537175 scopus 로고    scopus 로고
    • Regularization paths for generalized linear models via coordinate descent
    • Friedman, J., T. Hastie, and R. Tibshirani. 2010. Regularization paths for generalized linear models via coordinate descent. J. Stat. Softw. 33:1-22.
    • (2010) J. Stat. Softw. , vol.33 , pp. 1-22
    • Friedman, J.1    Hastie, T.2    Tibshirani, R.3
  • 10
    • 63449113494 scopus 로고    scopus 로고
    • Inferring genetic values for quantitative traits non-parametrically
    • doi:10.1017/S0016672308009890
    • Gianola, D., and G. De los Campos. 2008. Inferring genetic values for quantitative traits non-parametrically. Genet. Res. 90:525-540. doi:10.1017/S0016672308009890
    • (2008) Genet. Res. , vol.90 , pp. 525-540
    • Gianola, D.1    De los Campos, G.2
  • 11
    • 67349287476 scopus 로고    scopus 로고
    • Genomic selection: Prediction of accuracy and maximization of long term response
    • Goddard, M. 2009. Genomic selection: Prediction of accuracy and maximization of long term response. Genetica (The Hague) 136:245-257.
    • (2009) Genetica (The Hague) , vol.136 , pp. 245-257
    • Goddard, M.1
  • 12
    • 79953028464 scopus 로고    scopus 로고
    • Genomic selection in forest tree breeding
    • doi:10.1007/s11295-010-0328-4
    • Grattapaglia, D., and M.D.V. Resende. 2010. Genomic selection in forest tree breeding. Tree Genet. Genomes 7:241-255. doi:10.1007/s11295-010-0328-4
    • (2010) Tree Genet. Genomes. , vol.7 , pp. 241-255
    • Grattapaglia, D.1    ResenDe, M.D.V.2
  • 13
    • 17844404294 scopus 로고    scopus 로고
    • Linkage disequilibrium and association studies in higher plants: Present status and future prospects
    • doi:10.1007/s11103-005-0257-z
    • Gupta, P.K., S. Rustgi, and P.L. Kulwal. 2005. Linkage disequilibrium and association studies in higher plants: Present status and future prospects. Plant Mol. Biol. 57:461-485. doi:10.1007/s11103-005-0257-z
    • (2005) Plant Mol. Biol. , vol.57 , pp. 461-485
    • Gupta, P.K.1    Rustgi, S.2    Kulwal, P.L.3
  • 14
    • 59349098163 scopus 로고    scopus 로고
    • Invited review: Genomic selection in dairy cattle: Progress and challenges
    • doi:10.3168/jds.2008-1646
    • Hayes, B.J., P.J. Browman, A.J. Chamberlain, and M.E. Goddard. 2009. Invited review: Genomic selection in dairy cattle: Progress and challenges. J. Dairy Sci. 92:433-443. doi:10.3168/jds.2008-1646
    • (2009) J. Dairy Sci. , vol.92 , pp. 433-443
    • Hayes, B.J.1    Browman, P.J.2    Chamberlain, A.J.3    Goddard, M.E.4
  • 15
    • 78650127985 scopus 로고    scopus 로고
    • Plant breeding with genomic selection: Gain per unit time and cost
    • doi:10.2135/cropsci2009.11.0662
    • Heffner, E.L., A.J. Lorenz, J.-L. Jannink, and M.E. Sorrells. 2010. Plant breeding with genomic selection: Gain per unit time and cost. Crop Sci. 50:1681-1690. doi:10.2135/cropsci2009.11.0662
    • (2010) Crop Sci. , vol.50 , pp. 1681-1690
    • Heffner, E.L.1    Lorenz, A.J.2    Jannink, J.-L.3    Sorrells, M.E.4
  • 16
    • 59249106951 scopus 로고    scopus 로고
    • Genomic selection for crop improvement
    • doi:10.2135/cropsci2008.08.0512
    • Heffner, E.L., M.E. Sorrells, and J.L. Jannink. 2009. Genomic selection for crop improvement. Crop Sci. 49:1-12. doi:10.2135/cropsci2008.08.0512
    • (2009) Crop Sci. , vol.49 , pp. 1-12
    • Heffner, E.L.1    Sorrells, M.E.2    Jannink, J.L.3
  • 17
    • 0000823232 scopus 로고
    • Bayesian analysis of linkage between genetic markers and quantitative trait loci
    • Hoeschele, I., and P.M. Van Raden. 1993. Bayesian analysis of linkage between genetic markers and quantitative trait loci. I. Prior knowledge. Theor. Appl. Genet. 85:953-960.
    • (1993) I. Prior Knowledge. Theor. Appl. Genet. , vol.85 , pp. 953-960
    • Hoeschele, I.1    Van raden, P.M.2
  • 19
    • 0036661966 scopus 로고    scopus 로고
    • Optimization of multiple trait selection in western hemlock (Tsuga heterophylla (Raf.) Sarg.) including pulp and paper properties
    • doi:10.1051/forest:2002043
    • Ivkovich, M., and M. Koshy. 2002. Optimization of multiple trait selection in western hemlock (Tsuga heterophylla (Raf.) Sarg.) including pulp and paper properties. Ann. For. Sci. 59:577-582. doi:10.1051/forest:2002043
    • (2002) Ann. For. Sci. , vol.59 , pp. 577-582
    • Ivkovich, M.1    Koshy, M.2
  • 20
    • 79960569740 scopus 로고    scopus 로고
    • Prospects for genomic selection in conifer breeding: A simulation study of Cryptomeria japonica
    • doi:10.1007/s11295-011-0371-9
    • Iwata, H., T. Hayashi, and Y. Tsumura. 2011. Prospects for genomic selection in conifer breeding: A simulation study of Cryptomeria japonica. Tree Genet. Genomes 7:747-758. doi:10.1007/s11295-011-0371-9
    • (2011) Tree Genet. Genomes. , vol.7 , pp. 747-758
    • Iwata, H.1    Hayashi, T.2    Tsumura, Y.3
  • 21
    • 79961180831 scopus 로고    scopus 로고
    • Accuracy of genomic selection prediction in barley breeding programs: A simulation study based on the real single nucleotiDe polymorphism data of barley breeding lines
    • doi:10.2135/cropsci2010.12.0732
    • Iwata, H., and J.L. Jannink. 2011. Accuracy of genomic selection prediction in barley breeding programs: A simulation study based on the real single nucleotiDe polymorphism data of barley breeding lines. Crop Sci. 51:1915-1927. doi:10.2135/cropsci2010.12.0732
    • (2011) Crop Sci. , vol.51 , pp. 1915-1927
    • Iwata, H.1    Jannink, J.L.2
  • 22
    • 78049395924 scopus 로고    scopus 로고
    • Dynamics of long-term genomic selection
    • doi:10.1186/1297-9686-42-35
    • Jannink, J.L. 2010. Dynamics of long-term genomic selection. Genet. Sel. Evol. 42:35. doi:10.1186/1297-9686-42-35
    • (2010) Genet. Sel. Evol. , vol.42 , pp. 35
    • Jannink, J.L.1
  • 23
    • 77951987956 scopus 로고    scopus 로고
    • Genomic selection in plant breeding: From theory to practice
    • doi:10.1093/bfgp/elq001
    • Jannink, J.L., A.J. Lorentz, and H. Iwata. 2010. Genomic selection in plant breeding: From theory to practice. Brief Funct. Genom. 9:166-177. doi:10.1093/bfgp/elq001
    • (2010) Brief Funct. Genom. , vol.9 , pp. 166-177
    • Jannink, J.L.1    Lorentz, A.J.2    Iwata, H.3
  • 24
    • 45149105926 scopus 로고    scopus 로고
    • Efficient control of population structure in model organism association mapping
    • doi:10.1534/genetics.107.080101
    • Kang, H.M., N.A. Zaitlen, C.M. Wade, A. Kirby, D. Heckerman, M.J. Daly, and E. Eskin. 2008. Efficient control of population structure in model organism association mapping. Genetics 178:1709 1723. doi:10.1534/genetics.107.080101
    • (2008) Genetics , vol.178 , pp. 1709-1723
    • Kang, H.M.1    Zaitlen, N.A.2    WaDe, C.M.3    Kirby, A.4    Heckerman, D.5    Daly, M.J.6    Eskin, E.7
  • 25
    • 0025217786 scopus 로고
    • Efficiency of marker-assisted selection in the improvement of quantitative traits
    • Lande, R., and R. Thompson. 1990. Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743-756.
    • (1990) Genetics , vol.124 , pp. 743-756
    • LanDe, R.1    Thompson, R.2
  • 27
    • 70349197524 scopus 로고    scopus 로고
    • 2 population
    • doi:10.2135/cropsci2008.10.0587
    • 2 population. Crop Sci. 49:1719-1725. doi:10.2135/cropsci2008.10.0587
    • (2009) Crop Sci. , vol.49 , pp. 1719-1725
    • Mayor, P.1    Bernardo, R.2
  • 28
    • 0031833578 scopus 로고    scopus 로고
    • Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects
    • Melchinger, A.E., H.F. Utz, and C.C. Schon. 1998. Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149:383-403.
    • (1998) Genetics , vol.149 , pp. 383-403
    • Melchinger, A.E.1    Utz, H.F.2    Schon, C.C.3
  • 29
    • 0035045051 scopus 로고    scopus 로고
    • Prediction of total genetic value using genome-wiDe dense marker maps
    • Meuwissen, T.H.E., B.J. Hayes, and M.E. Goddard. 2001. Prediction of total genetic value using genome-wiDe dense marker maps. Genetics 157:1819-1829.
    • (2001) Genetics , vol.157 , pp. 1819-1829
    • Meuwissen, T.H.E.1    Hayes, B.J.2    Goddard, M.E.3
  • 30
    • 0037386996 scopus 로고    scopus 로고
    • Money matters (II): Costs of maize inbred line conversion schemes at CIMMYT using conventional and marker-assisted selection
    • doi:10.1023/A:1022872604743
    • Morris, M., K. Dreher, J.-M. Ribaut, and M. Khairallah. 2003. Money matters (II): Costs of maize inbred line conversion schemes at CIMMYT using conventional and marker-assisted selection. Mol. Breed. 11:235-247. doi:10.1023/A:1022872604743
    • (2003) Mol. Breed. , vol.11 , pp. 235-247
    • Morris, M.1    Dreher, K.2    Ribaut, J.-M.3    Khairallah, M.4
  • 31
    • 0032740251 scopus 로고    scopus 로고
    • Economics of plant breeding: The value of shorter breeding cycles for rice in Northeast Thailand
    • doi:10.1016/S0378-4290(99)00059-3
    • Pandey, S., and S. Rajatasereekul. 1999. Economics of plant breeding: The value of shorter breeding cycles for rice in Northeast Thailand. Field Crops Res. 64:187-197. doi:10.1016/S0378-4290(99)00059-3
    • (1999) Field Crops Res. , vol.64 , pp. 187-197
    • Pandey, S.1    Rajatasereekul, S.2
  • 32
    • 67849083102 scopus 로고    scopus 로고
    • Ridge regression and extensions for genomewiDe selection in maize
    • doi:10.2135/cropsci2008.10.0595
    • Piepho, H.P. 2009. Ridge regression and extensions for genomewiDe selection in maize. Crop Sci. 49:1165-1176. doi:10.2135/cropsci2008.10.0595
    • (2009) Crop Sci. , vol.49 , pp. 1165-1176
    • Piepho, H.P.1
  • 33
    • 1642473027 scopus 로고    scopus 로고
    • Corn and humans: Recombination and linkage disequilibrium in two genomes of similar size
    • doi:10.1016/j.tig.2003.12.002
    • Rafalski, A., and M. Morgante. 2004. Corn and humans: Recombination and linkage disequilibrium in two genomes of similar size. Trends Genet. 20:103-111. doi:10.1016/j.tig.2003.12.002
    • (2004) Trends Genet. , vol.20 , pp. 103-111
    • Rafalski, A.1    Morgante, M.2
  • 34
    • 84872203218 scopus 로고    scopus 로고
    • R Development Core Team, R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, accessed 26 Sept. 2012
    • R Development Core Team. 2011. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. http://www.R-project.org/ [accessed 26 Sept. 2012].
    • (2011)
  • 35
    • 0001659812 scopus 로고
    • Limitations of molecular- marker-aided selection in forest tree breeding
    • doi:10.1139/x92-140
    • Strauss, S.H., R. Lande, and G. Namkoong. 1992. Limitations of molecular- marker-aided selection in forest tree breeding. Can. J. For. Res. 22:1050-1061. doi:10.1139/x92-140
    • (1992) Can. J. For. Res. , vol.22 , pp. 1050-1061
    • Strauss, S.H.1    LanDe, R.2    Namkoong, G.3
  • 36
    • 0015070635 scopus 로고
    • Linkage disequilibrium and homozygosity of chromosome segments in finite populations
    • doi:10.1016/0040-5809(71)90011-6
    • Sved, J.A. 1971. Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor. Popul. Biol. 2:125-141. doi:10.1016/0040-5809(71)90011-6
    • (1971) Theor. Popul. Biol. , vol.2 , pp. 125-141
    • Sved, J.A.1
  • 38
    • 43349106548 scopus 로고    scopus 로고
    • GenomewiDe selection in oil palm: Increasing selection gain per unit time and cost with small populations
    • Wong, C.K., and R. Bernardo. 2008. GenomewiDe selection in oil palm: Increasing selection gain per unit time and cost with small populations. Theor. Appl. Genet. 116:815-824.
    • (2008) Theor. Appl. Genet. , vol.116 , pp. 815-824
    • Wong, C.K.1    Bernardo, R.2


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