Arabinose is metabolized via a phosphoketolase pathway in Clostridium acetobutylicum ATCC 824

Journal of Industrial Microbiology and Biotechnology

Volumn 39, Issue 12, 2012, Pages 1859-1867

  Servinsky, M D ^a   Germane, K L ^a   Liu, S ^a   Kiel, J T ^a   Clark, A M ^a   Shankar, J ^a   Sund, C J ^a  

^a U S ARMY RESEARCH LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ARABINOSE; BUTYRIC ACID; CELL EXTRACT; FRUCTOSE 6 PHOSPHOKETOLASE; GLUCOSE; MESSENGER RNA; RECOMBINANT PROTEIN; TRANSFERASE; UNCLASSIFIED DRUG; XYLOSE;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; CARBOHYDRATE METABOLISM; CELL GROWTH; CLOSTRIDIUM ACETOBUTYLICUM; CONTROLLED STUDY; ENZYME ACTIVITY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MICROARRAY ANALYSIS; NONHUMAN; OXIDATION; POLYMERASE CHAIN REACTION; PROTEIN EXPRESSION; QUANTITATIVE ANALYSIS; ZYMOGRAPHY;

ALDEHYDE-LYASES; ARABINOSE; CLOSTRIDIUM ACETOBUTYLICUM; FRUCTOSE; GENE EXPRESSION REGULATION, BACTERIAL; GLUCOSE; PENTOSE PHOSPHATE PATHWAY; RNA, MESSENGER; TIME FACTORS; XYLOSE;

CLOSTRIDIUM ACETOBUTYLICUM; CLOSTRIDIUM ACETOBUTYLICUM ATCC 824;

EID: 84872143426     PISSN: 13675435     EISSN: 14765535     Source Type: Journal    
DOI: 10.1007/s10295-012-1186-x     Document Type: Article

References (27)

1. Albersheim P, Darvill A, Roberts K, Sederoff R, Staehelin A (2011) Plant cell walls. Garland Science, Taylor and Francis Group, LLC, New York, NY
2. Edgar R, Domrachev M, Lash AE (2002) Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30(1) :207-210
3. Finch AS Mackie TD Sund CJ Sumner JJ (2011) Metabolite analysis of Clostridium acetobutylicum fermentation in a microbial fuel cell. Bioresource Technol 102(1) 312-315. Doi 10.1016j.biortech.2010.06.149
4. Gheshlaghi R, Scharer JM, Moo-Young M, Chou CP (2009) Metabolic pathways of clostridia for producing butanol. Biotechnol Adv 27(6) :764-781. doi:10.1016/j.biotechadv.2009.06.002
5. Goldberg ML, Racker E (1962) Formation and isolation of a glycolaldehyde-phosphoketolase intermediate. J Biol Chem 237:3841-3842
6. Grimmler C, Held C, Liebl W, Ehrenreich A (2010) Transcriptional analysis of catabolite repression in Clostridium acetobutylicum growing on mixtures of D-glucose and D-xylose. J Biotechnol 150(3) :315-323. doi:10.1016/j.jbiotec. 2010.09.938
7. Gu Y, Li J, Zhang L, Chen J, Niu L, Yang Y, Yang S, Jiang W (2009) Improvement of xylose utilization in Clostridium acetobutylicum via expression of the talA gene encoding transaldolase from Escherichia coli. J Biotechnol 143(4) :284-287. doi: 10.1016/j.jbiotec.2009.08.009
8. Jones DT, Woods DR (1986) Acetone-butanol fermentation revisited. Microbiol Rev 50(4) :484-524
9. Jurgens G, Survase S, Berezina O, Sklavounos E, Linnekoski J, Kurkijarvi A, Vakeva M, van Heiningen A, Granstrom T (2012) Butanol production from lignocellulosics. Biotechnol Lett 34(8) :1415-1434. doi:10.1007/s10529-012-0926- 3
10. Kim BH, Gadd GM (2008) Bacterial physiology and metabolism. Cambridge University Press, Cambridge
11. Lee J, Yun H, Feist AM, Palsson BO, Lee SY (2008) Genomescale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network. Appl Microbiol Biot 80(5) :849-862. doi:10.1007/s00253-008- 1654-4
12. Lee JY, Jang YS, Lee J, Papoutsakis ET, Lee SY (2009) Metabolic engineering of Clostridium acetobutylicum M5 for highly selective butanol production. Biotechnol J 4(10) :1432-1440. doi: 10.1002/biot.200900142
13. Lutke-Eversloh T, Bahl H (2011) Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production. Curr Opin Biotechnol 22(5) :634-647. doi:10.1016/j.copbio.2011.01.011
14. Manchenko GP (2003) Handbook of detection of enzymes on electrophoretic gels, 2nd edn. CRC Press, Boca Raton
15. Meile L, Rohr LM, Geissman TA, Herensperger M, Teuber M (2001) Characterization of the D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase gene (xfp) from Bifidobacterium lactis. J Bacteriol 183(9) :2929-2936
16. Nigam PS, Singh A (2011) Production of liquid biofuels from renewable resources. Prog Energ Combust 37(1) :52-68. doi: 10.1016/j.pecs.2010.01.003
17. Ounine K, Petitdemange H, Raval G, Gay R (1983) Acetonebutanol production from pentoses by Clostridium Acetobutylicum. Biotechnol Lett 5(9) :605-610
18. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29(9) :e45
19. Ramakers C, Ruijter JM, Deprez RH, Moorman AF (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339(1) :62-66
20. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365-386
21. Sanchez B, Zuniga M, Gonzalez-Candelas F, de los Reyes-Gavilan CG, Margolles A (2010) Bacterial and eukaryotic phosphoketolases: phylogeny, distribution and evolution. J Mol Microb Biotech 18(1) :37-51. doi:10.1159/000274310
22. Senger RS, Papoutsakis ET (2008) Genome-scale model for Clostridium acetobutylicum: part I. Metabolic network resolution and analysis. Biotechnol Bioeng 101 (5) :1036-1052. doi: 10.1002/Bit.22010
23. Servinsky MD, Kiel JT, Dupuy NF, Sund CJ (2010) Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum. Microbiol-Sgm 156:3478-3491. doi: 10.1099/Mic.0.037085-0
24. Shinkawa S, Okano K, Yoshida S, Tanaka T, Ogino C, Fukuda H, Kondo A (2011) Improved homo l-lactic acid fermentation from xylose by abolishment of the phosphoketolase pathway and enhancement of the pentose phosphate pathway in genetically modified xylose-assimilating Lactococcus lactis. Appl Microbiol Biot 91(6) :1537-1544. doi:10.1007/s00253-011-3342-z
25. Wiesenborn DP, Rudolph FB, Papoutsakis ET (1988) Thiolase from Clostridium-acetobutylicum Atcc-824 and its role in the synthesis of acids and solvents. Appl Environ Microbiol 54(11) : 2717-2722
26. Xiao H, Gu Y, Ning Y, Yang Y, Mitchell WJ, Jiang W, Yang S (2011) Confirmation and elimination of xylose metabolism bottlenecks in glucose phosphoenolpyruvate-dependent phosphotransferase system-deficient Clostridium acetobutylicum for simultaneous utilization of glucose, xylose, and arabinose. Appl EnvironMicrobiol 77(22) :7886-7895. doi:10.1128/AEM.00644-11
27. Zhang L, Leyn SA, Gu Y, Jiang W, Rodionov DA, Yang C (2012) Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum. J Bacteriol 194(5) : 1055-1064. doi:10.1128/JB.06241-11