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Volumn 62, Issue 1, 2013, Pages 233-242

High throughput real-time RT-PCR assays for specific detection of cassava brown streak disease causal viruses, and their application to testing of planting material

Author keywords

454 sequencing; Cassava brown streak virus; Certification; Diagnostics; Probability of detection

Indexed keywords

AGRICULTURAL PRODUCTION; BIOASSAY; DETECTION METHOD; POLYMERASE CHAIN REACTION; RISK FACTOR; SHRUB; VIRAL DISEASE; VIRUS;

EID: 84872125607     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2012.02622.x     Document Type: Article
Times cited : (53)

References (19)
  • 1
    • 73049112516 scopus 로고    scopus 로고
    • Optimization of diagnostic RT-PCR protocols and sampling procedures for the reliable and cost-effective detection of Cassava brown streak virus
    • Abarshi MM, Mohammed IU, Wasswa P et al., 2010. Optimization of diagnostic RT-PCR protocols and sampling procedures for the reliable and cost-effective detection of Cassava brown streak virus. Journal of Virological Methods163, 353-9.
    • (2010) Journal of Virological Methods , vol.163 , pp. 353-359
    • Abarshi, M.M.1    Mohammed, I.U.2    Wasswa, P.3
  • 2
    • 67249148158 scopus 로고    scopus 로고
    • Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology
    • Adams IP, Glover RH, Monger WA et al., 2009. Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology. Molecular Plant Pathology10, 537-45.
    • (2009) Molecular Plant Pathology , vol.10 , pp. 537-545
    • Adams, I.P.1    Glover, R.H.2    Monger, W.A.3
  • 3
    • 33845893047 scopus 로고    scopus 로고
    • Re-emergence of cassava brown streak disease in Uganda
    • Alicai T, Omongo CA, Maruthi MN et al., 2007. Re-emergence of cassava brown streak disease in Uganda. Plant Disease91, 24-9.
    • (2007) Plant Disease , vol.91 , pp. 24-29
    • Alicai, T.1    Omongo, C.A.2    Maruthi, M.N.3
  • 4
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA et al., 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research25, 3389-402.
    • (1997) Nucleic Acids Research , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 7
    • 0037660703 scopus 로고    scopus 로고
    • Cassava brown streak disease: a review of present knowledge and research needs
    • Hillocks RJ, Jennings DL, 2003. Cassava brown streak disease: a review of present knowledge and research needs. International Journal of Pest Management49, 225-34.
    • (2003) International Journal of Pest Management , vol.49 , pp. 225-234
    • Hillocks, R.J.1    Jennings, D.L.2
  • 8
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S, Nei M, Dudley J, Tamura K, 2008. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics9, 299-306.
    • (2008) Briefings in Bioinformatics , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 9
    • 80051590963 scopus 로고    scopus 로고
    • Comparing the regional epidemiology of the Cassava mosaic and Cassava brown streak virus pandemics in Africa
    • Legg JP, Jeremiah SC, Obiero HM et al., 2011. Comparing the regional epidemiology of the Cassava mosaic and Cassava brown streak virus pandemics in Africa. Virus Research159, 161-70.
    • (2011) Virus Research , vol.159 , pp. 161-170
    • Legg, J.P.1    Jeremiah, S.C.2    Obiero, H.M.3
  • 10
    • 60449107692 scopus 로고    scopus 로고
    • Genetically distinct strains of Cassava brown streak virus in the Lake Victoria basin and the Indian Ocean coastal area of East Africa
    • Mbanzibwa DR, Tian YP, Tugume AK et al., 2009. Genetically distinct strains of Cassava brown streak virus in the Lake Victoria basin and the Indian Ocean coastal area of East Africa. Archives of Virology154, 353-9.
    • (2009) Archives of Virology , vol.154 , pp. 353-359
    • Mbanzibwa, D.R.1    Tian, Y.P.2    Tugume, A.K.3
  • 11
    • 78651254173 scopus 로고    scopus 로고
    • Simultaneous virus-specific detection of the two cassava brown streak-associated viruses by RT-PCR reveals wide distribution in East Africa, mixed infections, and infections in Manihot glaziovii
    • Mbanzibwa DR, Tian YP, Tugume AK et al., 2011. Simultaneous virus-specific detection of the two cassava brown streak-associated viruses by RT-PCR reveals wide distribution in East Africa, mixed infections, and infections in Manihot glaziovii. Journal of Virological Methods171, 394-400.
    • (2011) Journal of Virological Methods , vol.171 , pp. 394-400
    • Mbanzibwa, D.R.1    Tian, Y.P.2    Tugume, A.K.3
  • 12
    • 0035665379 scopus 로고    scopus 로고
    • Identification of different isolates of Cassava brown streak virus and development of a diagnostic test
    • Monger WA, Seal S, Cotton S, Foster GD, 2001a. Identification of different isolates of Cassava brown streak virus and development of a diagnostic test. Plant Pathology50, 768-75.
    • (2001) Plant Pathology , vol.50 , pp. 768-775
    • Monger, W.A.1    Seal, S.2    Cotton, S.3    Foster, G.D.4
  • 13
    • 0034890730 scopus 로고    scopus 로고
    • Molecular characterization of the Cassava brown streak virus coat protein
    • Monger WA, Seal S, Isaac AM, Foster GD, 2001b. Molecular characterization of the Cassava brown streak virus coat protein. Plant Pathology50, 527-34.
    • (2001) Plant Pathology , vol.50 , pp. 527-534
    • Monger, W.A.1    Seal, S.2    Isaac, A.M.3    Foster, G.D.4
  • 14
    • 77949905680 scopus 로고    scopus 로고
    • The complete genome sequence of the Tanzanian strain of Cassava brown streak virus and comparison with the Ugandan strain sequence
    • Monger WA, Alicai T, Ndunguru J et al., 2010. The complete genome sequence of the Tanzanian strain of Cassava brown streak virus and comparison with the Ugandan strain sequence. Archives of Virology155, 429-33.
    • (2010) Archives of Virology , vol.155 , pp. 429-433
    • Monger, W.A.1    Alicai, T.2    Ndunguru, J.3
  • 15
    • 84860400161 scopus 로고    scopus 로고
    • Reference genes for reliable potyvirus quantitation in cassava and analysis of Cassava brown streak virus load in host varieties
    • Moreno I, Gruissem W, Vanderschuren H, 2011. Reference genes for reliable potyvirus quantitation in cassava and analysis of Cassava brown streak virus load in host varieties. Journal of Virological Methods177, 49-54.
    • (2011) Journal of Virological Methods , vol.177 , pp. 49-54
    • Moreno, I.1    Gruissem, W.2    Vanderschuren, H.3
  • 16
    • 0034014532 scopus 로고    scopus 로고
    • Detection of Potato mop top virus and Tobacco rattle virus using a multiplex real-time fluorescent reverse-transcription polymerase chain reaction assay
    • Mumford RA, Walsh K, Barker I, Boonham N, 2000. Detection of Potato mop top virus and Tobacco rattle virus using a multiplex real-time fluorescent reverse-transcription polymerase chain reaction assay. Phytopathology90, 448-53.
    • (2000) Phytopathology , vol.90 , pp. 448-453
    • Mumford, R.A.1    Walsh, K.2    Barker, I.3    Boonham, N.4
  • 17
    • 0001970317 scopus 로고
    • Virus diseases of East African plants: VI a progress report on studies of the diseases of cassava
    • Storey HH, 1936. Virus diseases of East African plants: VI a progress report on studies of the diseases of cassava. East African Agricultural Journal2, 34-9.
    • (1936) East African Agricultural Journal , vol.2 , pp. 34-39
    • Storey, H.H.1
  • 18
  • 19
    • 77951041143 scopus 로고    scopus 로고
    • Analysis of cassava brown streak viruses reveals the presence of distinct virus species causing cassava brown streak disease in East Africa
    • Winter S, Koerbler M, Stein B, Pietruszka A, Paape M, Butgereitt A, 2010. Analysis of cassava brown streak viruses reveals the presence of distinct virus species causing cassava brown streak disease in East Africa. Journal of General Virology91, 1365-72.
    • (2010) Journal of General Virology , vol.91 , pp. 1365-1372
    • Winter, S.1    Koerbler, M.2    Stein, B.3    Pietruszka, A.4    Paape, M.5    Butgereitt, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.