-
1
-
-
79960563344
-
Determinants and dynamics of genome accessibility
-
Bell O, Tiwari VK, Thomä NH, Schübeler D, (2011) Determinants and dynamics of genome accessibility. Nat Rev Genet 12: 554-564.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 554-564
-
-
Bell, O.1
Tiwari, V.K.2
Thomä, N.H.3
Schübeler, D.4
-
3
-
-
0042243498
-
Contribution of opening and bending dynamics to specific recognition of DNA damage
-
Seibert E, Ross JB, Osman R, (2003) Contribution of opening and bending dynamics to specific recognition of DNA damage. J Mol Biol 330: 687-703.
-
(2003)
J Mol Biol
, vol.330
, pp. 687-703
-
-
Seibert, E.1
Ross, J.B.2
Osman, R.3
-
4
-
-
21844442362
-
Repair of UV lesions in nucleosomes-intrinsic properties and remodeling
-
Thoma F, (2005) Repair of UV lesions in nucleosomes-intrinsic properties and remodeling. DNA Repair (Amst) 4: 855-869.
-
(2005)
DNA Repair (Amst)
, vol.4
, pp. 855-869
-
-
Thoma, F.1
-
5
-
-
0036847501
-
DNA base excision repair of uracil residues in reconstituted nucleosome core particles
-
Nilsen H, Lindahl T, Verreault A, (2002) DNA base excision repair of uracil residues in reconstituted nucleosome core particles. EMBO J 21: 5943-5952.
-
(2002)
EMBO J
, vol.21
, pp. 5943-5952
-
-
Nilsen, H.1
Lindahl, T.2
Verreault, A.3
-
6
-
-
84863245662
-
Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes
-
Chen X, Chen Z, Chen H, Su Z, Yang J, et al. (2012) Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes. Science 335: 1235-1238.
-
(2012)
Science
, vol.335
, pp. 1235-1238
-
-
Chen, X.1
Chen, Z.2
Chen, H.3
Su, Z.4
Yang, J.5
-
7
-
-
0025344222
-
A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy
-
Frederico LA, Kunkel TA, Shaw BR, (1990) A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy. Biochemistry 29: 2532-2537.
-
(1990)
Biochemistry
, vol.29
, pp. 2532-2537
-
-
Frederico, L.A.1
Kunkel, T.A.2
Shaw, B.R.3
-
8
-
-
0005001210
-
UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases
-
Gale JM, Nissen KA, Smerdon MJ, (1987) UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases. Proc Natl Acad Sci U S A 84: 6644-6648.
-
(1987)
Proc Natl Acad Sci U S A
, vol.84
, pp. 6644-6648
-
-
Gale, J.M.1
Nissen, K.A.2
Smerdon, M.J.3
-
9
-
-
76949089832
-
Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
-
Dillon SC, Dorman CJ, (2010) Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat Rev Microbiol 8: 185-195.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 185-195
-
-
Dillon, S.C.1
Dorman, C.J.2
-
10
-
-
0027083350
-
A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli
-
Almirón M, Link AJ, Furlong D, Kolter R, (1992) A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli. Genes Dev 6: 2646-2654.
-
(1992)
Genes Dev
, vol.6
, pp. 2646-2654
-
-
Almirón, M.1
Link, A.J.2
Furlong, D.3
Kolter, R.4
-
11
-
-
3042662444
-
Dps protects cells against multiple stresses during stationary phase
-
Nair S, Finkel SE, (2004) Dps protects cells against multiple stresses during stationary phase. J Bacteriol 186: 4192-4198.
-
(2004)
J Bacteriol
, vol.186
, pp. 4192-4198
-
-
Nair, S.1
Finkel, S.E.2
-
12
-
-
0030811135
-
Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps
-
Martinez A, Kolter R, (1997) Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps. J Bacteriol 179: 5188-5194.
-
(1997)
J Bacteriol
, vol.179
, pp. 5188-5194
-
-
Martinez, A.1
Kolter, R.2
-
13
-
-
0026749802
-
I will survive: protecting and repairing spore DNA
-
Setlow P, (1992) I will survive: protecting and repairing spore DNA. J Bacteriol 174: 2737-2741.
-
(1992)
J Bacteriol
, vol.174
, pp. 2737-2741
-
-
Setlow, P.1
-
14
-
-
0037020069
-
Iron incorporation into Escherichia coli Dps gives rise to a ferritin-like microcrystalline core
-
Ilari A, Ceci P, Ferrari D, Rossi GL, Chiancone E, (2002) Iron incorporation into Escherichia coli Dps gives rise to a ferritin-like microcrystalline core. J Biol Chem 277: 37619-37623.
-
(2002)
J Biol Chem
, vol.277
, pp. 37619-37623
-
-
Ilari, A.1
Ceci, P.2
Ferrari, D.3
Rossi, G.L.4
Chiancone, E.5
-
15
-
-
0029061514
-
Increased sensitivity to gamma irradiation in bacteria lacking protein HU
-
Boubrik F, Rouviere-Yaniv J, (1995) Increased sensitivity to gamma irradiation in bacteria lacking protein HU. Proc Natl Acad Sci U S A 92: 3958-3962.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 3958-3962
-
-
Boubrik, F.1
Rouviere-Yaniv, J.2
-
16
-
-
0031559589
-
Induction and repair of cyclobutane pyrimidine dimers in the Escherichia coli tRNA gene tyrT: Fis protein affects dimer induction in the control region and suppresses preferential repair in the coding region of the transcribed strand, except in a short region near the transcription start site
-
Li S, Waters R, (1997) Induction and repair of cyclobutane pyrimidine dimers in the Escherichia coli tRNA gene tyrT: Fis protein affects dimer induction in the control region and suppresses preferential repair in the coding region of the transcribed strand, except in a short region near the transcription start site. J Mol Biol 271: 31-46.
-
(1997)
J Mol Biol
, vol.271
, pp. 31-46
-
-
Li, S.1
Waters, R.2
-
17
-
-
0026577472
-
Effects of DNA looping on pyrimidine dimer formation
-
Pehrson JR, Cohen LH, (1992) Effects of DNA looping on pyrimidine dimer formation. Nucleic Acids Res 20: 1321-1324.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 1321-1324
-
-
Pehrson, J.R.1
Cohen, L.H.2
-
18
-
-
56649089682
-
Evolutionary footprints of nucleosome positions in yeast
-
Washietl S, Machne R, Goldman N, (2008) Evolutionary footprints of nucleosome positions in yeast. Trends Genet 24: 583-587.
-
(2008)
Trends Genet
, vol.24
, pp. 583-587
-
-
Washietl, S.1
Machne, R.2
Goldman, N.3
-
19
-
-
77249125310
-
Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair
-
Ying H, Epps J, Williams R, Huttley G, (2009) Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair. Mol Biol Evol 27: 637-649.
-
(2009)
Mol Biol Evol
, vol.27
, pp. 637-649
-
-
Ying, H.1
Epps, J.2
Williams, R.3
Huttley, G.4
-
20
-
-
78651240895
-
Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast
-
Kenigsberg E, Bar A, Segal E, Tanay A, (2010) Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast. PLoS Comput Biol 6: e1001039.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Kenigsberg, E.1
Bar, A.2
Segal, E.3
Tanay, A.4
-
21
-
-
80555156662
-
Widespread signatures of recent selection linked to nucleosome positioning in the human lineage
-
Prendergast JG, Semple CA, (2011) Widespread signatures of recent selection linked to nucleosome positioning in the human lineage. Genome Res 21: 1777-1787.
-
(2011)
Genome Res
, vol.21
, pp. 1777-1787
-
-
Prendergast, J.G.1
Semple, C.A.2
-
22
-
-
79953788666
-
Impact of chromatin structure on sequence variability in the human genome
-
Tolstorukov MY, Volfovsky N, Stephens RM, Park PJ, (2011) Impact of chromatin structure on sequence variability in the human genome. Nat Struct Mol Biol 18: 510-515.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 510-515
-
-
Tolstorukov, M.Y.1
Volfovsky, N.2
Stephens, R.M.3
Park, P.J.4
-
23
-
-
57149100569
-
The impact of the nucleosome code on protein-coding sequence evolution in yeast
-
Warnecke T, Batada NN, Hurst LD, (2008) The impact of the nucleosome code on protein-coding sequence evolution in yeast. PLoS Genet 4: e1000250.
-
(2008)
PLoS Genet
, vol.4
-
-
Warnecke, T.1
Batada, N.N.2
Hurst, L.D.3
-
24
-
-
58449116917
-
Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites
-
Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, et al. (2009) Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science 323: 401-404.
-
(2009)
Science
, vol.323
, pp. 401-404
-
-
Sasaki, S.1
Mello, C.C.2
Shimada, A.3
Nakatani, Y.4
Hashimoto, S.5
-
25
-
-
84865248380
-
Chromatin organization is a major influence on regional mutation rates in human cancer cells
-
Schuster-Böckler B, Lehner B, (2012) Chromatin organization is a major influence on regional mutation rates in human cancer cells. Nature 488: 504-507.
-
(2012)
Nature
, vol.488
, pp. 504-507
-
-
Schuster-Böckler, B.1
Lehner, B.2
-
26
-
-
0026181844
-
DNA repair and the role of chromatin structure
-
Smerdon MJ, (1991) DNA repair and the role of chromatin structure. Curr Opin Cell Biol 3: 422-428.
-
(1991)
Curr Opin Cell Biol
, vol.3
, pp. 422-428
-
-
Smerdon, M.J.1
-
27
-
-
0032963791
-
RNA polymerase II transcription suppresses nucleosomal modulation of UV-induced (6-4) photoproduct and cyclobutane pyrimidine dimer repair in yeast
-
Tijsterman M, de Pril R, Tasseron-de Jong JG, Brouwer J, (1999) RNA polymerase II transcription suppresses nucleosomal modulation of UV-induced (6-4) photoproduct and cyclobutane pyrimidine dimer repair in yeast. Mol Cell Biol 19: 934-940.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 934-940
-
-
Tijsterman, M.1
de Pril, R.2
Tasseron-de Jong, J.G.3
Brouwer, J.4
-
28
-
-
84867298738
-
Chromatin architectures at fission yeast transcriptional promoters and replication origins
-
Givens RM, Lai WK, Rizzo JM, Bard JE, Mieczkowski PA, et al. (2012) Chromatin architectures at fission yeast transcriptional promoters and replication origins. Nucleic Acids Res 40: 7176-7189.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 7176-7189
-
-
Givens, R.M.1
Lai, W.K.2
Rizzo, J.M.3
Bard, J.E.4
Mieczkowski, P.A.5
-
29
-
-
41149092355
-
Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response
-
Shivaswamy S, Iyer VR, (2008) Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response. Mol Cell Biol 28: 2221-2234.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 2221-2234
-
-
Shivaswamy, S.1
Iyer, V.R.2
-
30
-
-
79957929301
-
Stable and dynamic nucleosome states during a meiotic developmental process
-
Zhang L, Ma H, Pugh BF, (2011) Stable and dynamic nucleosome states during a meiotic developmental process. Genome Res 21: 875-884.
-
(2011)
Genome Res
, vol.21
, pp. 875-884
-
-
Zhang, L.1
Ma, H.2
Pugh, B.F.3
-
31
-
-
79953676877
-
Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli
-
Kahramanoglou C, Seshasayee AS, Prieto AI, Ibberson D, Schmidt S, et al. (2011) Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli. Nucleic Acids Res 39: 2073-2091.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 2073-2091
-
-
Kahramanoglou, C.1
Seshasayee, A.S.2
Prieto, A.I.3
Ibberson, D.4
Schmidt, S.5
-
32
-
-
84860378352
-
Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12
-
Prieto AI, Kahramanoglou C, Ali RM, Fraser GM, Seshasayee AS, et al. (2012) Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12. Nucleic Acids Res 40: 3524-3537.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3524-3537
-
-
Prieto, A.I.1
Kahramanoglou, C.2
Ali, R.M.3
Fraser, G.M.4
Seshasayee, A.S.5
-
33
-
-
84860512528
-
Evidence of non-random mutation rates suggests an evolutionary risk management strategy
-
Martincorena I, Seshasayee AS, Luscombe NM, (2012) Evidence of non-random mutation rates suggests an evolutionary risk management strategy. Nature 485: 95-98.
-
(2012)
Nature
, vol.485
, pp. 95-98
-
-
Martincorena, I.1
Seshasayee, A.S.2
Luscombe, N.M.3
-
34
-
-
84867339877
-
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
-
Lee H, Popodi E, Tang H, Foster PL, (2012) Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc Natl Acad Sci U S A 109: E2774-83.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
-
-
Lee, H.1
Popodi, E.2
Tang, H.3
Foster, P.L.4
-
35
-
-
34547770887
-
Causes and consequences of DNA repair activity modulation during stationary phase in Escherichia coli
-
Saint-Ruf C, Pesut J, Sopta M, Matic I, (2007) Causes and consequences of DNA repair activity modulation during stationary phase in Escherichia coli. Crit Rev Biochem Mol Biol 42: 259-270.
-
(2007)
Crit Rev Biochem Mol Biol
, vol.42
, pp. 259-270
-
-
Saint-Ruf, C.1
Pesut, J.2
Sopta, M.3
Matic, I.4
-
36
-
-
0035788426
-
Escherichia coli DNA glycosylase Mug: a growth-regulated enzyme required for mutation avoidance in stationary-phase cells
-
Mokkapati SK, Fernández de Henestrosa AR, Bhagwat AS, (2001) Escherichia coli DNA glycosylase Mug: a growth-regulated enzyme required for mutation avoidance in stationary-phase cells. Mol Microbiol 41: 1101-1111.
-
(2001)
Mol Microbiol
, vol.41
, pp. 1101-1111
-
-
Mokkapati, S.K.1
Fernández de Henestrosa, A.R.2
Bhagwat, A.S.3
-
37
-
-
0028810970
-
Deamination of cytosine-containing pyrimidine photodimers in UV-irradiated DNA. Significance for UV light mutagenesis
-
Barak Y, Cohen-Fix O, Livneh Z, (1995) Deamination of cytosine-containing pyrimidine photodimers in UV-irradiated DNA. Significance for UV light mutagenesis. J Biol Chem 270: 24174-24179.
-
(1995)
J Biol Chem
, vol.270
, pp. 24174-24179
-
-
Barak, Y.1
Cohen-Fix, O.2
Livneh, Z.3
-
38
-
-
0028241445
-
DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli
-
Mackay WJ, Han S, Samson LD, (1994) DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli. J Bacteriol 176: 3224-3230.
-
(1994)
J Bacteriol
, vol.176
, pp. 3224-3230
-
-
Mackay, W.J.1
Han, S.2
Samson, L.D.3
-
39
-
-
0029925165
-
Very short patch repair: reducing the cost of cytosine methylation
-
Lieb M, Bhagwat AS, (1996) Very short patch repair: reducing the cost of cytosine methylation. Mol Microbiol 20: 467-473.
-
(1996)
Mol Microbiol
, vol.20
, pp. 467-473
-
-
Lieb, M.1
Bhagwat, A.S.2
-
40
-
-
84863314385
-
Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription
-
Kahramanoglou C, Prieto AI, Khedkar S, Haase B, Gupta A, et al. (2012) Genomics of DNA cytosine methylation in Escherichia coli reveals its role in stationary phase transcription. Nat Commun 3: 886.
-
(2012)
Nat Commun
, vol.3
, pp. 886
-
-
Kahramanoglou, C.1
Prieto, A.I.2
Khedkar, S.3
Haase, B.4
Gupta, A.5
-
41
-
-
0032803977
-
Growth phase-dependent regulation of Vsr endonuclease may contribute to 5-methylcytosine mutational hot spots in Escherichia coli
-
Macintyre G, Pitsikas P, Cupples CG, (1999) Growth phase-dependent regulation of Vsr endonuclease may contribute to 5-methylcytosine mutational hot spots in Escherichia coli. J Bacteriol 181: 4435-4436.
-
(1999)
J Bacteriol
, vol.181
, pp. 4435-4436
-
-
Macintyre, G.1
Pitsikas, P.2
Cupples, C.G.3
-
42
-
-
0034234592
-
Recognition of GT mismatches by Vsr mismatch endonuclease
-
Fox KR, Allinson SL, Sahagun-Krause H, Brown T, (2000) Recognition of GT mismatches by Vsr mismatch endonuclease. Nucleic Acids Res 28: 2535-2540.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 2535-2540
-
-
Fox, K.R.1
Allinson, S.L.2
Sahagun-Krause, H.3
Brown, T.4
-
43
-
-
0029992026
-
Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells
-
Feng G, Tsui HC, Winkler ME, (1996) Depletion of the cellular amounts of the MutS and MutH methyl-directed mismatch repair proteins in stationary-phase Escherichia coli K-12 cells. J Bacteriol 178: 2388-2396.
-
(1996)
J Bacteriol
, vol.178
, pp. 2388-2396
-
-
Feng, G.1
Tsui, H.C.2
Winkler, M.E.3
-
44
-
-
0344395567
-
High deleterious genomic mutation rate in stationary phase of Escherichia coli
-
Loewe L, Textor V, Scherer S, (2003) High deleterious genomic mutation rate in stationary phase of Escherichia coli. Science 302: 1558-1560.
-
(2003)
Science
, vol.302
, pp. 1558-1560
-
-
Loewe, L.1
Textor, V.2
Scherer, S.3
-
45
-
-
0141453385
-
Stationary phase mutagenesis: mechanisms that accelerate adaptation of microbial populations under environmental stress
-
Kivisaar M, (2003) Stationary phase mutagenesis: mechanisms that accelerate adaptation of microbial populations under environmental stress. Environ Microbiol 5: 814-827.
-
(2003)
Environ Microbiol
, vol.5
, pp. 814-827
-
-
Kivisaar, M.1
-
46
-
-
0034235825
-
Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA
-
Nakahara T, Zhang QM, Hashiguchi K, Yonei S, (2000) Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA. Nucleic Acids Res 28: 2551-2556.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 2551-2556
-
-
Nakahara, T.1
Zhang, Q.M.2
Hashiguchi, K.3
Yonei, S.4
-
47
-
-
0032829121
-
A UmuD,C-dependent pathway for spontaneous G:C to C:G transversions in stationary phase Escherichia coli mut Y
-
Timms AR, Muriel W, Bridges BA, (1999) A UmuD,C-dependent pathway for spontaneous G:C to C:G transversions in stationary phase Escherichia coli mut Y. Mutat Res 435: 77-80.
-
(1999)
Mutat Res
, vol.435
, pp. 77-80
-
-
Timms, A.R.1
Muriel, W.2
Bridges, B.A.3
-
48
-
-
0031547972
-
Solution structure as a function of pH of two central mismatches, C. T and C. C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics
-
Boulard Y, Cognet JA, Fazakerley GV, (1997) Solution structure as a function of pH of two central mismatches, C. T and C. C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. J Mol Biol 268: 331-347.
-
(1997)
J Mol Biol
, vol.268
, pp. 331-347
-
-
Boulard, Y.1
Cognet, J.A.2
Fazakerley, G.V.3
-
49
-
-
66649094404
-
A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
-
Leopold SR, Magrini V, Holt NJ, Shaikh N, Mardis ER, et al. (2009) A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci U S A 106: 8713-8718.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 8713-8718
-
-
Leopold, S.R.1
Magrini, V.2
Holt, N.J.3
Shaikh, N.4
Mardis, E.R.5
-
50
-
-
77956193448
-
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
Darling AE, Mau B, Perna NT, (2010) progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5: e11147.
-
(2010)
PLoS One
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
51
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
52
-
-
57149096433
-
Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures
-
Stamatakis A, Ott M, (2008) Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures. Philos Trans R Soc Lond B Biol Sci 363: 3977-3984.
-
(2008)
Philos Trans R Soc Lond B Biol Sci
, vol.363
, pp. 3977-3984
-
-
Stamatakis, A.1
Ott, M.2
-
53
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, et al. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 5: e1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
Barbe, V.4
Baeriswyl, S.5
-
54
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
55
-
-
0035478854
-
Random Forests
-
Breiman L, (2001) Random Forests. Machine Learning 45: 5-32.
-
(2001)
Machine Learning
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
56
-
-
76749092270
-
The WEKA Data Mining Software: An Update
-
Hall M, Frank E, Holmes G, Pfahringer B, Reutemann P, et al. (2009) The WEKA Data Mining Software: An Update. SIGKDD Explorations 11: 10-18.
-
(2009)
SIGKDD Explorations
, vol.11
, pp. 10-18
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
-
57
-
-
70149113077
-
-
The R Development Core Team, Vienna, Austria: R Foundation for Statistical Computing
-
The R Development Core Team (2009) R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2009)
R: A language and environment for statistical computing
-
-
|