Probing the plasma membrane organization in living cells by spot variation fluorescence correlation spectroscopy

Methods in Enzymology

Volumn 519, Issue , 2013, Pages 277-302

  Billaudeau, Cyrille ^a,b   Mailfert, Sébastien ^a,b   Trombik, Tomasz ^a,b   Bertaux, Nicolas ^c,d   Rouger, Vincent ^a,b   Hamon, Yannick ^a,b   He, Hai Tao ^a,b   Marguet, Didier ^a,b  

^a CENTRE D IMMUNOLOGIE DE MARSEILLE LUMINY   (France)

^b INSERM   (France)

^c CNRS   (France)

^d Ecole Centrale Marseille   (France)

Author keywords

Confinement; Fluorescence correlation spectroscopy; Lateral diffusion; Nanodomains; Plasma membrane

Indexed keywords

FLUORESCENT DYE;

ANTIBODY LABELING; ARTICLE; BLEACHING; CELL ADHESION; CELL GROWTH; CELL MEMBRANE; COVALENT BOND; DIFFUSION; DIFFUSION COEFFICIENT; ENZYME MECHANISM; FLUORESCENCE; FLUORESCENCE CORRELATION SPECTROSCOPY; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; ILLUMINATION; MATHEMATICAL MODEL; MICROSCOPY; PRIORITY JOURNAL; SPOT VARIATION FLUORESCENCE CORRELATION SPECTROSCOPY; T LYMPHOCYTE;

EID: 84872039485     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/B978-0-12-405539-1.00010-5     Document Type: Chapter

References (46)

1. K. Bacia, S.A. Kim, and P. Schwille Fluorescence cross-correlation spectroscopy in living cells Nature Methods 3 2006 83 89
2. K. Bacia, and P. Schwille A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy Methods 29 2003 74 85
3. M. Baens, H. Noels, V. Broeckx, S. Hagens, S. Fevery, and A.D. Billiau The dark side of EGFP: Defective polyubiquitination PLoS One 1 2006 e54
4. J.-P. Bouchaud, and A. Georges Anomalous diffusion in disordered media: Statistical mechanisms, models and physical applications Physics Reports 195 1990 127 293
5. N. Cahuzac, W. Baum, V. Kirkin, F. Conchonaud, L. Wawrezinieck, and D. Marguet Fas ligand is localized to membrane rafts, where it displays increased cell death-inducing activity Blood 107 2006 2384 2391
6. K. Chakrabandhu, Z. Herincs, S. Huault, B. Dost, L. Peng, and F. Conchonaud Palmitoylation is required for efficient Fas cell death signaling The EMBO Journal 26 2007 209 220
7. S. Chiantia, J. Ries, and P. Schwille Fluorescence correlation spectroscopy in membrane structure elucidation Biochimica et Biophysica Acta 1788 2009 225 233
8. D.M. Chudakov, M.V. Matz, S. Lukyanov, and K.A. Lukyanov Fluorescent proteins and their applications in imaging living cells and tissues Physiological Reviews 90 2010 1103 1163
9. N. Destainville Theory of fluorescence correlation spectroscopy at variable observation area for two-dimensional diffusion on a meshgrid Soft Matter 4 2008 1288 1301
10. C. Eggeling, C. Ringemann, R. Medda, G. Schwarzmann, K. Sandhoff, and S. Polyakova Direct observation of the nanoscale dynamics of membrane lipids in a living cell Nature 457 2009 1159 1162
11. E.L. Elson Fluorescence correlation spectroscopy: Past, present, future Biophysical Journal 101 2011 2855 2870
12. E.L. Elson, and D. Magde Fluorescence correlation spectroscopy. I. Conceptual basis and theory Biopolymers 13 1974 1 27
13. A.J. Garcia-Saez, and P. Schwille Fluorescence correlation spectroscopy for the study of membrane dynamics and protein/lipid interactions Methods 46 2008 116 122
14. A. Gautier, A. Juillerat, C. Heinis, I.R. Correa Jr., M. Kindermann, and F. Beaufils An engineered protein tag for multiprotein labeling in living cells Chemistry & Biology 15 2008 128 136
15. B.A. Griffin, S.R. Adams, and R.Y. Tsien Specific covalent labeling of recombinant protein molecules inside live cells Science 281 1998 269 272
16. S. Guia, B.N. Jaeger, S. Piatek, S. Mailfert, T. Trombik, and A. Fenis Confinement of activating receptors at the plasma membrane controls natural killer cell tolerance Science Signaling 4 2011 ra21
17. H.T. He, and D. Marguet Detecting nanodomains in living cell membrane by fluorescence correlation spectroscopy Annual Review of Physical Chemistry 62 2011 417 436
18. S.W. Hell, and J. Wichmann Breaking the diffraction resolution limit by stimulated emission: Stimulated-emission-depletion fluorescence microscopy Optics Letters 19 1994 780 782
19. J. Humpolickova, E. Gielen, A. Benda, V. Fagulova, J. Vercammen, and M. Vandeven Probing diffusion laws within cellular membranes by Z-scan fluorescence correlation spectroscopy Biophysical Journal 91 2006 L23 L25
20. D.E. Koppel Statistical accuracy in fluorescence correlation spectroscopy Physical Review A10 1974 1938 1945
21. A. Kusumi, C. Nakada, K. Ritchie, K. Murase, K. Suzuki, and H. Murakoshi Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: High-speed single-molecule tracking of membrane molecules Annual Review of Biophysics and Biomolecular Structure 34 2005 351 378
22. A. Kusumi, Y.M. Shirai, I. Koyama-Honda, K.G. Suzuki, and T.K. Fujiwara Hierarchical organization of the plasma membrane: Investigations by single-molecule tracking vs. fluorescence correlation spectroscopy FEBS Letters 584 2010 1814 1823
23. R. Lasserre, X.J. Guo, F. Conchonaud, Y. Hamon, O. Hawchar, and A.M. Bernard Raft nanodomains contribute to Akt/PKB plasma membrane recruitment and activation Nature Chemical Biology 4 2008 538 547
24. J.I. Lee, M. Sato, K. Ushida, and J. Mochida Measurement of diffusion in articular cartilage using fluorescence correlation spectroscopy BMC Biotechnology 11 2011 19
25. P.F. Lenne, L. Wawrezinieck, F. Conchonaud, O. Wurtz, A. Boned, and X.J. Guo Dynamic molecular confinement in the plasma membrane by microdomains and the cytoskeleton meshwork The EMBO Journal 25 2006 3245 3256
26. C. Manzo, T.S. van Zanten, and M.F. Garcia-Parajo Nanoscale fluorescence correlation spectroscopy on intact living cell membranes with NSOM probes Biophysical Journal 100 2011 L8 L10
27. A. Masuda, K. Ushida, and T. Okamoto New fluorescence correlation spectroscopy enabling direct observation of spatiotemporal dependence of diffusion constants as an evidence of anomalous transport in extracellular matrices Biophysical Journal 88 2005 3584 3591
28. U. Meseth, T. Wohland, R. Rigler, and H. Vogel Resolution of fluorescence correlation measurements Biophysical Journal 76 1999 1619 1631
29. L.W. Miller, Y. Cai, M.P. Sheetz, and V.W. Cornish In vivo protein labeling with trimethoprim conjugates: A flexible chemical tag Nature Methods 2 2005 255 257
30. V. Mueller, C. Ringemann, A. Honigmann, G. Schwarzmann, R. Medda, and M. Leutenegger STED nanoscopy reveals molecular details of cholesterol- and cytoskeleton-modulated lipid interactions in living cells Biophysical Journal 101 2011 1651 1660
31. H. Niv, O. Gutman, Y. Kloog, and Y.I. Henis Activated K-Ras and H-Ras display different interactions with saturable nonraft sites at the surface of live cells The Journal of Cell Biology 157 2002 865 872
32. R. Rigler, and E. Elson Fluorescence correlation spectroscopy: Theory and applications 2001 Springer-Verlag Berlin, Heidelberg, New York
33. V. Ruprecht, S. Wieser, D. Marguet, and G.J. Schutz Spot variation fluorescence correlation spectroscopy allows for superresolution chronoscopy of confinement times in membranes Biophysical Journal 100 2011 2839 2845
34. S. Ruttinger, V. Buschmann, B. Kramer, R. Erdmann, R. Macdonald, and F. Koberling Comparison and accuracy of methods to determine the confocal volume for quantitative fluorescence correlation spectroscopy Journal of Microscopy 232 2008 343 352
35. M.J. Saxton New and notable: Fluorescence correlation spectroscopy Biophysical Journal 89 2005 3678 3679
36. M.J. Saxton A biological interpretation of transient anomalous subdiffusion. I. Qualitative model Biophysical Journal 92 2007 1178 1191
37. M.J. Saxton A biological interpretation of transient anomalous subdiffusion. II. Reaction kinetics Biophysical Journal 94 2008 760 771
38. L. Wawrezinieck, P.-F. Lenne, D. Marguet, and H. Rigneault Fluorescence correlation spectroscopy to determine diffusion laws: Application to live cell membranes Proceedings of SPIE 5462 2004 92 102
39. L. Wawrezinieck, H. Rigneault, D. Marguet, and P.F. Lenne Fluorescence correlation spectroscopy diffusion laws to probe the submicron cell membrane organization Biophysical Journal 89 2005 4029 4042
40. J. Wenger, F. Conchonaud, J. Dintinger, L. Wawrezinieck, T.W. Ebbesen, and H. Rigneault Diffusion analysis within single nanometric apertures reveals the ultrafine cell membrane organization Biophysical Journal 92 2007 913 919
41. J. Wenger, D. Gerard, H. Aouani, and H. Rigneault Nanoaperture-enhanced signal-to-noise ratio in fluorescence correlation spectroscopy Analytical Chemistry 81 2009 834 839
42. S. Wieser, and G.J. Schutz Tracking single molecules in the live cell plasma membrane - Do's and don't's Methods 46 2008 131 140
43. K.I. Willig, S.O. Rizzoli, V. Westphal, R. Jahn, and S.W. Hell STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis Nature 440 2006 935 939
44. T. Wohland, R. Rigler, and H. Vogel The standard deviation in fluorescence correlation spectroscopy Biophysical Journal 80 2001 2987 2999
45. E. Yechiel, and M. Edidin Micrometer-scale domains in fibroblast plasma membranes The Journal of Cell Biology 105 1987 755 760
46. D.A. Zacharias, J.D. Violin, A.C. Newton, and R.Y. Tsien Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells Science 296 2002 913 916