-
1
-
-
33947126628
-
Complement-mediated activation of the adaptive immune responses
-
Toapanta F, Ross T, (2006) Complement-mediated activation of the adaptive immune responses. Immunol Res 36: 197-210.
-
(2006)
Immunol Res
, vol.36
, pp. 197-210
-
-
Toapanta, F.1
Ross, T.2
-
2
-
-
0035006284
-
Structure and biology of complement protein C3, a connecting link between innate and acquired immunity
-
Sahu A, Lambris J, (2001) Structure and biology of complement protein C3, a connecting link between innate and acquired immunity. Immunol Rev 180: 35-48.
-
(2001)
Immunol Rev
, vol.180
, pp. 35-48
-
-
Sahu, A.1
Lambris, J.2
-
3
-
-
5444259851
-
The complement system in regulation of adaptive immunity
-
doi:10.1038/ni1113
-
Carroll MC, (2004) The complement system in regulation of adaptive immunity. Nat Immunol 5: 981-986 doi:10.1038/ni1113.
-
(2004)
Nat Immunol
, vol.5
, pp. 981-986
-
-
Carroll, M.C.1
-
4
-
-
0043011079
-
Evolution of complement as an effector system in innate and adaptive immunity
-
Sunyer J, Boshra H, Lorenzo G, Parra D, Freedman B, et al. (2003) Evolution of complement as an effector system in innate and adaptive immunity. Immunol Res 27: 549-564.
-
(2003)
Immunol Res
, vol.27
, pp. 549-564
-
-
Sunyer, J.1
Boshra, H.2
Lorenzo, G.3
Parra, D.4
Freedman, B.5
-
5
-
-
78549235728
-
Delineation of the complement receptor type 2-C3d complex by site-directed mutagenesis and molecular docking
-
doi:10.1016/j.jmb.2010.10.005
-
Shaw CD, Storek MJ, Young KA, Kovacs JM, Thurman JM, et al. (2010) Delineation of the complement receptor type 2-C3d complex by site-directed mutagenesis and molecular docking. J Mol Biol 404: 697-710 doi:10.1016/j.jmb.2010.10.005.
-
(2010)
J Mol Biol
, vol.404
, pp. 697-710
-
-
Shaw, C.D.1
Storek, M.J.2
Young, K.A.3
Kovacs, J.M.4
Thurman, J.M.5
-
6
-
-
66149096224
-
Mapping of the C3d ligand binding site on complement receptor 2 (CR2/CD21) using nuclear magnetic resonance and chemical shift analysis
-
doi:10.1074/jbc.M808404200
-
Kovacs JM, Hannan JP, Eisenmesser EZ, Holers VM, (2009) Mapping of the C3d ligand binding site on complement receptor 2 (CR2/CD21) using nuclear magnetic resonance and chemical shift analysis. J Biol Chem 284: 9513-9520 doi:10.1074/jbc.M808404200.
-
(2009)
J Biol Chem
, vol.284
, pp. 9513-9520
-
-
Kovacs, J.M.1
Hannan, J.P.2
Eisenmesser, E.Z.3
Holers, V.M.4
-
7
-
-
13844255020
-
Mutational analysis of the complement receptor type 2 (CR2/CD21)-C3d interaction reveals a putative charged SCR1 binding site for C3d
-
Hannan J, Young K, Guthridge J, Asokan R, Szakonyi G, et al. (2005) Mutational analysis of the complement receptor type 2 (CR2/CD21)-C3d interaction reveals a putative charged SCR1 binding site for C3d. J Mol Biol 346: 845-858.
-
(2005)
J Mol Biol
, vol.346
, pp. 845-858
-
-
Hannan, J.1
Young, K.2
Guthridge, J.3
Asokan, R.4
Szakonyi, G.5
-
8
-
-
0034292433
-
Structure-guided identification of C3d residues essential for its binding to complement receptor 2 (CD21)
-
Clemenza L, Isenman D, (2000) Structure-guided identification of C3d residues essential for its binding to complement receptor 2 (CD21). J Immunol 165: 3839-3848.
-
(2000)
J Immunol
, vol.165
, pp. 3839-3848
-
-
Clemenza, L.1
Isenman, D.2
-
9
-
-
54249162843
-
Solution structure of the complex formed between human complement C3d and full-length complement receptor type 2
-
doi:10.1016/j.jmb.2008.08.084
-
Li K, Okemefuna AI, Gor J, Hannan JP, Asokan R, et al. (2008) Solution structure of the complex formed between human complement C3d and full-length complement receptor type 2. J Mol Biol 384: 137-150 doi:10.1016/j.jmb.2008.08.084.
-
(2008)
J Mol Biol
, vol.384
, pp. 137-150
-
-
Li, K.1
Okemefuna, A.I.2
Gor, J.3
Hannan, J.P.4
Asokan, R.5
-
10
-
-
0032557324
-
X-ray crystal structure of C3d: A C3 fragment and ligand for complement receptor 2
-
Nagar B, Jones R, Diefenbach R, Isenman D, Rini J, (1998) X-ray crystal structure of C3d: A C3 fragment and ligand for complement receptor 2. Science 280: 1277-1281.
-
(1998)
Science
, vol.280
, pp. 1277-1281
-
-
Nagar, B.1
Jones, R.2
Diefenbach, R.3
Isenman, D.4
Rini, J.5
-
11
-
-
2942536153
-
The electrostatic nature of C3d-Complement receptor 2 association
-
Morikis D, Lambris J, (2004) The electrostatic nature of C3d-Complement receptor 2 association. J Immunol 172: 7537-7547.
-
(2004)
J Immunol
, vol.172
, pp. 7537-7547
-
-
Morikis, D.1
Lambris, J.2
-
12
-
-
34247617750
-
Immunophysical exploration of C3d-CR2(CCP1-2) interaction using molecular dynamics and electrostatics
-
doi:10.1016/j.jmb.2007.02.101
-
Zhang L, Mallik B, Morikis D, (2007) Immunophysical exploration of C3d-CR2(CCP1-2) interaction using molecular dynamics and electrostatics. J Mol Biol 369: 567-583 doi:10.1016/j.jmb.2007.02.101.
-
(2007)
J Mol Biol
, vol.369
, pp. 567-583
-
-
Zhang, L.1
Mallik, B.2
Morikis, D.3
-
13
-
-
0030593030
-
C3d of complement as a molecular adjuvant: Bridging innate and acquired immunity
-
Dempsey P, Allison M, Akkaraju S, Goodnow C, Fearon D, (1996) C3d of complement as a molecular adjuvant: Bridging innate and acquired immunity. Science 271: 348-350.
-
(1996)
Science
, vol.271
, pp. 348-350
-
-
Dempsey, P.1
Allison, M.2
Akkaraju, S.3
Goodnow, C.4
Fearon, D.5
-
14
-
-
0028916599
-
A hot spot of binding energy in a hormone-receptor interface
-
doi:10.1126/science.7529940
-
Clackson T, Wells J, (1995) A hot spot of binding energy in a hormone-receptor interface. Science 267: 383-386 doi:10.1126/science.7529940.
-
(1995)
Science
, vol.267
, pp. 383-386
-
-
Clackson, T.1
Wells, J.2
-
15
-
-
0037609791
-
Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces
-
doi:10.1073/pnas.1030237100
-
Ma B, Elkayam T, Wolfson H, Nussinov R, (2003) Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. P Natl Acad Sci Usa 100: 5772-5777 doi:10.1073/pnas.1030237100.
-
(2003)
P Natl Acad Sci Usa
, vol.100
, pp. 5772-5777
-
-
Ma, B.1
Elkayam, T.2
Wolfson, H.3
Nussinov, R.4
-
16
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig B, Nicholls A, (1995) Classical electrostatics in biology and chemistry. Science 268: 1144-1149.
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
18
-
-
84857895493
-
Complement inhibition by Staphylococcus aureus: Electrostatics of C3d-Efbc and C3d-ehp association
-
Gorham R, Kieslich C, Morikis D, (2011) Complement inhibition by Staphylococcus aureus: Electrostatics of C3d-Efbc and C3d-ehp association. Cell Mol Bioeng 5: 32-43.
-
(2011)
Cell Mol Bioeng
, vol.5
, pp. 32-43
-
-
Gorham, R.1
Kieslich, C.2
Morikis, D.3
-
19
-
-
78650607656
-
A structural basis for Staphylococcal complement subversion: X-ray structure of the complement-binding domain of Staphylococcus aureus protein Sbi in complex with ligand C3d
-
doi:10.1016/j.molimm.2010.09.017
-
Clark EA, Crennell S, Upadhyay A, Zozulya AV, Mackay JD, et al. (2011) A structural basis for Staphylococcal complement subversion: X-ray structure of the complement-binding domain of Staphylococcus aureus protein Sbi in complex with ligand C3d. Mol Immunol 48: 452-462 doi:10.1016/j.molimm.2010.09.017.
-
(2011)
Mol Immunol
, vol.48
, pp. 452-462
-
-
Clark, E.A.1
Crennell, S.2
Upadhyay, A.3
Zozulya, A.V.4
Mackay, J.D.5
-
20
-
-
77952813339
-
Molecular mechanisms of complement evasion: Learning from staphylococci and meningococci
-
doi:10.1038/nrmicro2366
-
Serruto D, Rappuoli R, Scarselli M, Gros P, van Strijp JAG, (2010) Molecular mechanisms of complement evasion: Learning from staphylococci and meningococci. Nat Rev Micro 8: 393-399 doi:10.1038/nrmicro2366.
-
(2010)
Nat Rev Micro
, vol.8
, pp. 393-399
-
-
Serruto, D.1
Rappuoli, R.2
Scarselli, M.3
Gros, P.4
van Strijp, J.A.G.5
-
21
-
-
0032568645
-
Electrostatic steering and ionic tethering in enzyme-ligand binding: Insights from simulations
-
Wade R, Gabdoulline R, Ludemann S, Lounnas V, (1998) Electrostatic steering and ionic tethering in enzyme-ligand binding: Insights from simulations. Proc Natl Acad Sci USA 95: 5942-5949.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5942-5949
-
-
Wade, R.1
Gabdoulline, R.2
Ludemann, S.3
Lounnas, V.4
-
23
-
-
78751566641
-
Is the rigid-body assumption reasonable? Insights into the effects of dynamics on the electrostatic analysis of barnase-barstar
-
doi:10.1016/j.jnoncrysol.2010.05.087
-
Kieslich CA, Gorham RD, Morikis D, (2011) Is the rigid-body assumption reasonable? Insights into the effects of dynamics on the electrostatic analysis of barnase-barstar. J Non-Cryst Solids 357: 707-716 doi:10.1016/j.jnoncrysol.2010.05.087.
-
(2011)
J Non-Cryst Solids
, vol.357
, pp. 707-716
-
-
Kieslich, C.A.1
Gorham, R.D.2
Morikis, D.3
-
24
-
-
67349128569
-
Dual nature of the adaptive immune system in lampreys
-
doi:10.1038/nature08068
-
Guo P, Hirano M, Herrin BR, Li J, Yu C, et al. (2009) Dual nature of the adaptive immune system in lampreys. Nature 459: 796-802 doi:10.1038/nature08068.
-
(2009)
Nature
, vol.459
, pp. 796-802
-
-
Guo, P.1
Hirano, M.2
Herrin, B.R.3
Li, J.4
Yu, C.5
-
25
-
-
66049136648
-
Darwinian biophysics: Electrostatics and evolution in the kinetics of molecular binding
-
McCammon J, (2009) Darwinian biophysics: Electrostatics and evolution in the kinetics of molecular binding. Proc Natl Acad Sci USA 106: 7683-7684.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7683-7684
-
-
McCammon, J.1
-
26
-
-
0000203447
-
Diffusional dynamics of ligand receptor association
-
McCammon J, Northrup S, Allison S, (1986) Diffusional dynamics of ligand receptor association. J Phys Chem-Us 90: 3901-3905.
-
(1986)
J Phys Chem-Us
, vol.90
, pp. 3901-3905
-
-
McCammon, J.1
Northrup, S.2
Allison, S.3
-
27
-
-
0028774340
-
Stability and function: two constraints in the evolution of barstar and other proteins
-
Schreiber G, Buckle A, Fersht A, (1994) Stability and function: two constraints in the evolution of barstar and other proteins. Structure 2: 945-951.
-
(1994)
Structure
, vol.2
, pp. 945-951
-
-
Schreiber, G.1
Buckle, A.2
Fersht, A.3
-
28
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
UniProt Consortium, doi:10.1093/nar/gkr981
-
UniProt Consortium (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 40: D71-D75 doi:10.1093/nar/gkr981.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
-
29
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
doi:10.1093/nar/gkh340
-
Edgar R, (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797 doi:10.1093/nar/gkh340.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.1
-
30
-
-
33750398103
-
Bio3d: an R package for the comparative analysis of protein structures
-
doi:10.1093/bioinformatics/btl461
-
Grant BJ, Rodrigues APC, ElSawy KM, McCammon JA, Caves LSD, (2006) Bio3d: an R package for the comparative analysis of protein structures. Bioinformatics 22: 2695-2696 doi:10.1093/bioinformatics/btl461.
-
(2006)
Bioinformatics
, vol.22
, pp. 2695-2696
-
-
Grant, B.J.1
Rodrigues, A.P.C.2
ElSawy, K.M.3
McCammon, J.A.4
Caves, L.S.D.5
-
31
-
-
84907095419
-
R: A Language and Environment for Statistical Computing
-
R Development Core Team, Available:
-
R Development Core Team (2011) R: A Language and Environment for Statistical Computing. Vienna, Austria. R Foundation for Statistical Computing Available: http://www.R-project.org/.
-
(2011)
R Foundation for Statistical Computing
-
-
-
32
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker N, Sept D, Joseph S, Holst M, McCammon J, (2001) Electrostatics of nanosystems: Application to microtubules and the ribosome. Proc Natl Acad Sci USA 98: 10037-10041.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.1
Sept, D.2
Joseph, S.3
Holst, M.4
McCammon, J.5
-
33
-
-
80052270875
-
Calculation of free energy of protein association using Poisson-Boltzmann electrostatics: validation with experimental kinetic data
-
Gorham RD, Kieslich CA, Nichols A, Sausman NU, Foronda M, et al. (2011) Calculation of free energy of protein association using Poisson-Boltzmann electrostatics: validation with experimental kinetic data. Biopolymers 95: 746-54.
-
(2011)
Biopolymers
, vol.95
, pp. 746-754
-
-
Gorham, R.D.1
Kieslich, C.A.2
Nichols, A.3
Sausman, N.U.4
Foronda, M.5
-
34
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
doi:10.1002/jcc.20084
-
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, et al. (2004) UCSF Chimera- A visualization system for exploratory research and analysis. J Comput Chem 25: 1605-1612 doi:10.1002/jcc.20084.
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.1
Goddard, T.2
Huang, C.3
Couch, G.4
Greenblatt, D.5
|