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Volumn 92, Issue 2, 2013, Pages 183-188

Metagenomics-based analysis of viral communities in dairy lagoon wastewater

Author keywords

454 pyrosequencing; Agriculture wastewater; Dairy lagoons; Metagenomics; Transmission Electron Microscopy

Indexed keywords

DOUBLE STRANDED DNA; DOUBLE STRANDED RNA; SINGLE STRANDED DNA; SINGLE STRANDED RNA;

EID: 84871997058     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2012.11.016     Document Type: Article
Times cited : (28)

References (52)
  • 1
    • 0035007418 scopus 로고    scopus 로고
    • Frequency of morphological phage descriptions in the year 2000. Brief review
    • Ackermann H.W. Frequency of morphological phage descriptions in the year 2000. Brief review. Arch. Virol. 2001, 146:843-857.
    • (2001) Arch. Virol. , vol.146 , pp. 843-857
    • Ackermann, H.W.1
  • 2
    • 28644434277 scopus 로고    scopus 로고
    • Pyrosequencing: history, biochemistry and future
    • Ahmadian A., Ehn M., Hober S. Pyrosequencing: history, biochemistry and future. Clin. Chim. Acta 2006, 363:83-94.
    • (2006) Clin. Chim. Acta , vol.363 , pp. 83-94
    • Ahmadian, A.1    Ehn, M.2    Hober, S.3
  • 4
    • 0036842339 scopus 로고    scopus 로고
    • The fundamental contribution of phages to GAS evolution, genome diversification and strain emergence
    • Banks D.J., Beres S.B., Musser J.M. The fundamental contribution of phages to GAS evolution, genome diversification and strain emergence. Trends Microbiol. 2002, 10:515-521.
    • (2002) Trends Microbiol. , vol.10 , pp. 515-521
    • Banks, D.J.1    Beres, S.B.2    Musser, J.M.3
  • 5
    • 0024475207 scopus 로고
    • High abundance of viruses found in aquatic environments
    • Bergh O., Borsheim K.Y., Bratbak G., Heldal M. High abundance of viruses found in aquatic environments. Nature 1989, 340:467-468.
    • (1989) Nature , vol.340 , pp. 467-468
    • Bergh, O.1    Borsheim, K.Y.2    Bratbak, G.3    Heldal, M.4
  • 6
    • 79952524590 scopus 로고    scopus 로고
    • Viral metagenome analysis to guide human pathogen monitoring in environmental samples
    • Bibby K., Viau E., Peccia J. Viral metagenome analysis to guide human pathogen monitoring in environmental samples. Lett. Appl. Microbiol. 2011, 52:386-392.
    • (2011) Lett. Appl. Microbiol. , vol.52 , pp. 386-392
    • Bibby, K.1    Viau, E.2    Peccia, J.3
  • 7
    • 70449635531 scopus 로고    scopus 로고
    • Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States
    • Blinkova O., Rosario K., Li L., Kapoor A., Slikas B., Bernardin F., Breitbart M., Delwart E. Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States. J. Clin. Microbiol. 2009, 47:3507-3513.
    • (2009) J. Clin. Microbiol. , vol.47 , pp. 3507-3513
    • Blinkova, O.1    Rosario, K.2    Li, L.3    Kapoor, A.4    Slikas, B.5    Bernardin, F.6    Breitbart, M.7    Delwart, E.8
  • 8
    • 0032824510 scopus 로고    scopus 로고
    • Sewer workers: occupational risk for hepatitis C-report of two cases and review of literature
    • Brautbar N., Navizadeh N. Sewer workers: occupational risk for hepatitis C-report of two cases and review of literature. Arch. Environ. Health 1999, 54:328-330.
    • (1999) Arch. Environ. Health , vol.54 , pp. 328-330
    • Brautbar, N.1    Navizadeh, N.2
  • 11
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion
    • Brussow H., Canchaya C., Hardt W.D. Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev. 2004, 68:560-602.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 560-602
    • Brussow, H.1    Canchaya, C.2    Hardt, W.D.3
  • 13
    • 3142514466 scopus 로고    scopus 로고
    • The impact of prophages on bacterial chromosomes
    • Canchaya C., Fournous G., Brussow H. The impact of prophages on bacterial chromosomes. Mol. Microbiol. 2004, 53:9-18.
    • (2004) Mol. Microbiol. , vol.53 , pp. 9-18
    • Canchaya, C.1    Fournous, G.2    Brussow, H.3
  • 14
    • 14944358901 scopus 로고    scopus 로고
    • Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes
    • Cann A.J., Fandrich S.E., Heaphy S. Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes. Virus Genes 2005, 30:151-156.
    • (2005) Virus Genes , vol.30 , pp. 151-156
    • Cann, A.J.1    Fandrich, S.E.2    Heaphy, S.3
  • 19
    • 0033109791 scopus 로고    scopus 로고
    • Health, safety, and environmental concerns of farm animal waste
    • Cole D.J., Hill V.R., Humenik F.J., Sobsey M.D. Health, safety, and environmental concerns of farm animal waste. Occup. Med. 1999, 14:423-448.
    • (1999) Occup. Med. , vol.14 , pp. 423-448
    • Cole, D.J.1    Hill, V.R.2    Humenik, F.J.3    Sobsey, M.D.4
  • 20
    • 0343554737 scopus 로고    scopus 로고
    • Molecular epidemiological survey of rotaviruses in sewage by reverse transcriptase seminested PCR and restriction fragment length polymorphism assay
    • Dubois E., Le Guyader F., Haugarreau L., Kopecka H., Cormier M., Pommepuy M. Molecular epidemiological survey of rotaviruses in sewage by reverse transcriptase seminested PCR and restriction fragment length polymorphism assay. Appl. Environ. Microbiol. 1997, 63:1794-1800.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1794-1800
    • Dubois, E.1    Le Guyader, F.2    Haugarreau, L.3    Kopecka, H.4    Cormier, M.5    Pommepuy, M.6
  • 22
    • 20544469964 scopus 로고    scopus 로고
    • Enteric viruses of humans and animals in aquatic environments: health risks, detection, and potential water quality assessment tools
    • Fong T.T., Lipp E.K. Enteric viruses of humans and animals in aquatic environments: health risks, detection, and potential water quality assessment tools. Microbiol. Mol. Biol. Rev. 2005, 69:357-371.
    • (2005) Microbiol. Mol. Biol. Rev. , vol.69 , pp. 357-371
    • Fong, T.T.1    Lipp, E.K.2
  • 23
    • 66149150877 scopus 로고    scopus 로고
    • Microbial community structure and its functional implications
    • Fuhrman J.A. Microbial community structure and its functional implications. Nature 2009, 459:193-199.
    • (2009) Nature , vol.459 , pp. 193-199
    • Fuhrman, J.A.1
  • 24
    • 12344265213 scopus 로고    scopus 로고
    • Sources of pathogenic microorganisms and their fate during land application of wastes
    • Gerba C.P., Smith J.E. Sources of pathogenic microorganisms and their fate during land application of wastes. J. Environ. Qual. 2005, 34:42-48.
    • (2005) J. Environ. Qual. , vol.34 , pp. 42-48
    • Gerba, C.P.1    Smith, J.E.2
  • 25
  • 26
    • 0027491844 scopus 로고
    • Risk assessment of virus in drinking water
    • Haas C.N., Rose J.B., Gerba C., Regli S. Risk assessment of virus in drinking water. Risk Anal. 1993, 13:545-552.
    • (1993) Risk Anal. , vol.13 , pp. 545-552
    • Haas, C.N.1    Rose, J.B.2    Gerba, C.3    Regli, S.4
  • 28
    • 0035163073 scopus 로고    scopus 로고
    • Human adenoviruses and coliphages in urban runoff-impacted coastal waters of Southern California
    • Jiang S., Noble R., Chu W. Human adenoviruses and coliphages in urban runoff-impacted coastal waters of Southern California. Appl. Environ. Microbiol. 2001, 67:179-184.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 179-184
    • Jiang, S.1    Noble, R.2    Chu, W.3
  • 30
    • 0036777109 scopus 로고    scopus 로고
    • Community and environmental health effects of concentrated animal feeding operations
    • Kirkhorn S.R. Community and environmental health effects of concentrated animal feeding operations. Minn. Med. 2002, 85:38-43.
    • (2002) Minn. Med. , vol.85 , pp. 38-43
    • Kirkhorn, S.R.1
  • 33
  • 34
    • 0035072186 scopus 로고    scopus 로고
    • Assessment and impact of microbial fecal pollution and human enteric pathogens in a coastal community
    • Lipp E.K., Farrah S.A., Rose J.B. Assessment and impact of microbial fecal pollution and human enteric pathogens in a coastal community. Mar. Pollut. Bull. 2001, 42:286-293.
    • (2001) Mar. Pollut. Bull. , vol.42 , pp. 286-293
    • Lipp, E.K.1    Farrah, S.A.2    Rose, J.B.3
  • 35
    • 36549073663 scopus 로고    scopus 로고
    • Analysis of multiple enteric viral targets as sewage markers in coral reefs
    • Lipp E.K., Futch J.C., Griffin D.W. Analysis of multiple enteric viral targets as sewage markers in coral reefs. Mar. Pollut. Bull. 2007, 54:1897-1902.
    • (2007) Mar. Pollut. Bull. , vol.54 , pp. 1897-1902
    • Lipp, E.K.1    Futch, J.C.2    Griffin, D.W.3
  • 36
    • 15444367292 scopus 로고    scopus 로고
    • Presence of noroviruses and other enteric viruses in sewage and surface waters in The Netherlands
    • Lodder W.J., de Roda Husman A.M. Presence of noroviruses and other enteric viruses in sewage and surface waters in The Netherlands. Appl. Environ. Microbiol. 2005, 71:1453-1461.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1453-1461
    • Lodder, W.J.1    de Roda Husman, A.M.2
  • 38
    • 38049173333 scopus 로고    scopus 로고
    • Wastewater treatment plants as a source of microbial pathogens in the receiving watershed
    • Okoh A.I., Odjadjare E.E., Igbinosa E.O., Osode A.N. Wastewater treatment plants as a source of microbial pathogens in the receiving watershed. Afr. J. Biotechnol. 2007, 6:2932-2944.
    • (2007) Afr. J. Biotechnol. , vol.6 , pp. 2932-2944
    • Okoh, A.I.1    Odjadjare, E.E.2    Igbinosa, E.O.3    Osode, A.N.4
  • 39
    • 0031253386 scopus 로고    scopus 로고
    • Manure and microbes: public and animal health problem?
    • Pell A.N. Manure and microbes: public and animal health problem?. J. Dairy Sci. 1997, 80:2673-2681.
    • (1997) J. Dairy Sci. , vol.80 , pp. 2673-2681
    • Pell, A.N.1
  • 40
    • 0036330981 scopus 로고    scopus 로고
    • The Phage Proteomic Tree: a genome-based taxonomy for phage
    • Rohwer F., Edwards R. The Phage Proteomic Tree: a genome-based taxonomy for phage. J. Bacteriol. 2002, 184:4529-4535.
    • (2002) J. Bacteriol. , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 43
    • 70350491059 scopus 로고    scopus 로고
    • Diverse circovirus-like genome architectures revealed by environmental metagenomics
    • Rosario K., Duffy S., Breitbart M. Diverse circovirus-like genome architectures revealed by environmental metagenomics. J. Gen. Virol. 2009, 90:2418-2424.
    • (2009) J. Gen. Virol. , vol.90 , pp. 2418-2424
    • Rosario, K.1    Duffy, S.2    Breitbart, M.3
  • 44
    • 33746903546 scopus 로고    scopus 로고
    • Quantitation of hepatitis A virus and enterovirus levels in the lagoon canals and Lido beach of Venice, Italy, using real-time RT-PCR
    • Rose M.A., Dhar A.K., Brooks H.A., Zecchini F., Gersberg R.M. Quantitation of hepatitis A virus and enterovirus levels in the lagoon canals and Lido beach of Venice, Italy, using real-time RT-PCR. Water Res. 2006, 40:2387-2396.
    • (2006) Water Res. , vol.40 , pp. 2387-2396
    • Rose, M.A.1    Dhar, A.K.2    Brooks, H.A.3    Zecchini, F.4    Gersberg, R.M.5
  • 45
    • 13544251410 scopus 로고    scopus 로고
    • Nine-year study of the occurrence of culturable viruses in source water for two drinking water treatment plants and the influent and effluent of a wastewater treatment plant in Milwaukee, Wisconsin (August 1994 through July 2003)
    • Sedmak G., Bina D., MacDonald J., Couillard L. Nine-year study of the occurrence of culturable viruses in source water for two drinking water treatment plants and the influent and effluent of a wastewater treatment plant in Milwaukee, Wisconsin (August 1994 through July 2003). Appl. Environ. Microbiol. 2005, 71:1042-1050.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1042-1050
    • Sedmak, G.1    Bina, D.2    MacDonald, J.3    Couillard, L.4
  • 46
    • 1542638029 scopus 로고    scopus 로고
    • Assessment and management of watershed microbial contaminants
    • Smith J.E., Perdek J.M. Assessment and management of watershed microbial contaminants. Crit. Rev. Environ. Sci. Technol. 2004, 34:109-139.
    • (2004) Crit. Rev. Environ. Sci. Technol. , vol.34 , pp. 109-139
    • Smith, J.E.1    Perdek, J.M.2
  • 52
    • 0032836423 scopus 로고    scopus 로고
    • Detection of enteroviruses, adenoviruses and hepatitis A viruses in raw sewage and treated effluents by nested-PCR
    • Vantarakis A., Papapetropoulou M. Detection of enteroviruses, adenoviruses and hepatitis A viruses in raw sewage and treated effluents by nested-PCR. Water Air Soil Pollut. 1999, 114:85-93.
    • (1999) Water Air Soil Pollut. , vol.114 , pp. 85-93
    • Vantarakis, A.1    Papapetropoulou, M.2


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