Identification of an additional protein involved in mannan biosynthesis

Plant Journal

Volumn 73, Issue 1, 2013, Pages 105-117

  Wang, Yan ^a   Mortimer, Jennifer C ^b   Davis, Jonathan ^a,d   Dupree, Paul ^b   Keegstra, Kenneth ^a,c  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c Michigan State University   (United States)

^d NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Arabidopsis; Fenugreek; Glycosyltransferase; Golgi protein; GT65; Mannan biosynthesis

Indexed keywords

ARABIDOPSIS; CANDIDATE GENES; DOUBLE MUTANTS; FENUGREEK; FLUORESCENCE CONFOCAL MICROSCOPY; GALACTOMANNANS; GENES ENCODING; GLYCOSYL TRANSFERASE; GT65; IN-VITRO; INSERTION MUTANTS; SEED DEVELOPMENT; SIDE-CHAINS; SINGLE MUTANT; SYNTHASES; TRIGONELLA FOENUM-GRAECUM;

BIOCHEMISTRY; CARBOHYDRATES; CONFOCAL MICROSCOPY; ENCODING (SYMBOLS); GENES; PROTEINS; SYNTHESIS (CHEMICAL);

BIOSYNTHESIS;

ARABIDOPSIS; TRIGONELLA FOENUM-GRAECUM;

MANNAN; MANNAN SYNTHETASE; MANNOSYLTRANSFERASE; PLANT PROTEIN;

BIOSYNTHESIS; ENDOSPERM; GOLGI COMPLEX; METABOLISM; MICROSOME; PHYSIOLOGY; PLANT GENE; TRIGONELLA;

ENDOSPERM; GENES, PLANT; GOLGI APPARATUS; MANNANS; MANNOSYLTRANSFERASES; MICROSOMES; PLANT PROTEINS; TRIGONELLA;

EID: 84871957587     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12019     Document Type: Article

References (43)

1. Alonso, A.P., Piasecki, R.J., Wang, Y., LaClair, R.W. and Shachar-Hill, Y. (2010) Quantifying the labeling and the levels of plant cell wall precursors using ion chromatography tandem mass spectrometry. Plant Physiol. 153, 915-924.
2. Breton, C., Snajdrova, L., Jeanneau, C., Koca, J. and Imberty, A. (2006) Structures and mechanisms of glycosyltransferases. Glycobiology, 16, 29R-37R.
3. Carlsson, P. and Kjellen, L. (2012) Heparin biosynthesis. Handbook Exp. Pharmacol. 207, 23-41.
4. Chretiennotdinet, M.J., Courties, C., Vaquer, A., Neveux, J., Claustre, H., Lautier, J. and Machado, M.C. (1995) A new marine picoeucaryote-Ostreococcus tauri gen. et sp. nov. (Chlorophyta, Prasinophyceae). Phycologia, 34, 285-292.
5. Cocuron, J.C., Lerouxel, O., Drakakaki, G., Alonso, A.P., Liepman, A.H., Keegstra, K., Raikhel, N. and Wilkerson, C.G. (2007) A gene from the cellulose synthase-like C family encodes a b-1,4-glucan synthase. Proc. Natl Acad. Sci. USA, 104, 8550-8555.
6. Coutinho, P.M., Deleury, E., Davies, G.J. and Henrissat, B. (2003) An evolving hierarchical family classification for glycosyltransferases. J. Mol. Biol. 328, 307-317.
7. Davis, J., Brandizzi, F., Liepman, A.H. and Keegstra, K. (2010) Arabidopsis mannan synthase CSLA9 and glucan synthase CSLC4 have opposite orientations in the Golgi membrane. Plant J. 64, 1028-1037.
8. Dhugga, K.S., Barreiro, R., Whitten, B. et al. (2004) Guar seed b-mannan synthase is a member of the cellulose synthase super gene family. Science, 303, 363-366.
9. Dunkley, T.P., Watson, R., Griffin, J.L., Dupree, P. and Lilley, K.S. (2004) Localization of organelle proteins by isotope tagging (LOPIT). Mol. Cell. Proteomics, 3, 1128-1134.
10. Dunkley, T.P., Hester, S., Shadforth, I.P. et al. (2006) Mapping the Arabidopsis organelle proteome. Proc. Natl Acad. Sci. USA, 103, 6518-6523.
11. Edwards, M.E., Dickson, C.A., Chengappa, S., Sidebottom, C., Gidley, M.J. and Reid, J.S. (1999) Molecular characterisation of a membrane-bound galactosyltransferase of plant cell wall matrix polysaccharide biosynthesis. Plant J. 19, 691-697.
12. Fengel, D. and Wegener, G. (1989) Wood: Chemistry, Ultrastructure, Reactions. Berlin: Walter de Gryter.
13. Finn, R.D., Mistry, J., Tate, J. et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38, D211-D222.
14. Foster, C.E., Martin, T.M. and Pauly, M. (2010) Comprehensive compositional analysis of plant cell walls (lignocellulosic biomass). Part II: Carbohydrates. J. Vis. Exp. 37, e1837.
15. Gille, S., Cheng, K., Skinner, M.E., Liepman, A.H., Wilkerson, C.G. and Pauly, M. (2011) Deep sequencing of voodoo lily (Amorphophallus konjac): An approach to identify relevant genes involved in the synthesis of the hemicellulose glucomannan. Planta, 234, 515-526.
16. Goubet, F., Jackson, P., Deery, M.J. and Dupree, P. (2002) Polysaccharide analysis using carbohydrate gel electrophoresis: A method to study plant cell wall polysaccharides and polysaccharide hydrolases. Anal. Biochem. 300, 53-68.
17. Goubet, F., Barton, C.J., Mortimer, J.C., Yu, X., Zhang, Z., Miles, G.P., Richens, J., Liepman, A.H., Seffen, K. and Dupree, P. (2009) Cell wall glucomannan in Arabidopsis is synthesised by CSLA glycosyltransferases, and influences the progression of embryogenesis. Plant J. 60, 527-538.
18. Handford, M.G., Baldwin, T.C., Goubet, F., Prime, T.A., Miles, J., Yu, X. and Dupree, P. (2003) Localisation and characterisation of cell wall mannan polysaccharides in Arabidopsis thaliana. Planta, 218, 27-36.
19. Hansen, S.F., Bettler, E., Wimmerova, M., Imberty, A., Lerouxel, O. and Breton, C. (2009) Combination of several bioinformatics approaches for the identification of new putative glycosyltransferases in Arabidopsis. J. Proteome Res. 8, 743-753.
20. Hansen, S.F., Harholt, J., Oikawa, A. and Scheller, H.V. (2012) Plant glycosyltransferases beyond CAZy: A perspective on DUF families. Front. Plant Sci. 3, 59.
21. Hartley, M.D. and Imperiali, B. (2012) At the membrane frontier: A prospectus on the remarkable evolutionary conservation of polyprenols and polyprenyl-phosphates. Arch. Biochem. Biophys. 517, 83-97.
22. Liepman, A.H., Wilkerson, C.G. and Keegstra, K. (2005) Expression of cellulose synthase-like (Csl) genes in insect cells reveals that CslA family members encode mannan synthases. Proc. Natl Acad. Sci. USA, 102, 2221-2226.
23. Liepman, A.H., Nairn, C.J., Willats, W.G., Sorensen, I., Roberts, A.W. and Keegstra, K. (2007) Functional genomic analysis supports conservation of function among cellulose synthase-like A gene family members and suggests diverse roles of mannans in plants. Plant Physiol. 143, 1881-1893.
24. Lira-Navarrete, E., Valero-Gonzalez, J., Villanueva, R., Martinez-Julvez, M., Tejero, T., Merino, P., Panjikar, S. and Hurtado-Guerrero, R. (2011) Structural insights into the mechanism of protein O-fucosylation. PLoS One, 6, e25365.
25. Ma, B., Simala-Grant, J.L. and Taylor, D.E. (2006) Fucosylation in prokaryotes and eukaryotes. Glycobiology, 16, 158R-184R.
26. Marks, M.D., Betancur, L., Gilding, E., Chen, F., Bauer, S., Wenger, J.P., Dixon, R.A. and Haigler, C.H. (2008) A new method for isolating large quantities of Arabidopsis trichomes for transcriptome, cell wall and other types of analyses. Plant J. 56, 483-492.
27. McCartney, L., Marcus, S.E. and Knox, J.P. (2005) Monoclonal antibodies to plant cell wall xylans and arabinoxylans. J. Histochem. Cytochem. 53, 543-546.
28. Miller, D.H., Mellman, I.S., Lamport, D.T. and Miller, M. (1974) The chemical composition of the cell wall of Chlamydomonas gymnogama and the concept of a plant cell wall protein. J. Cell Biol. 63, 420-429.
29. Moller, I., Sorensen, I., Bernal, A.J. et al. (2007) High-throughput mapping of cell-wall polymers within and between plants using novel microarrays. Plant J. 50, 1118-1128.
30. Oikawa, A., Joshi, H.J., Rennie, E.A., Ebert, B., Manisseri, C., Heazlewood, J.L. and Scheller, H.V. (2010) An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development. PLoS One, 5, e15481.
31. Parsons, H.T., Christiansen, K., Knierim, B. et al. (2012) Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Plant Physiol. 159, 12-26.
32. Pauly, M. and Keegstra, K. (2008) Cell-wall carbohydrates and their modification as a resource for biofuels. Plant J. 54, 559-568.
33. Popper, Z.A. and Fry, S.C. (2003) Primary cell wall composition of bryophytes and charophytes. Ann. Bot. 91, 1-12.
34. Popper, Z.A., Michel, G., Herve, C., Domozych, D.S., Willats, W.G., Tuohy, M. G., Kloareg, B. and Stengel, D.B. (2011) Evolution and diversity of plant cell walls: From algae to flowering plants. Annu. Rev. Plant Biol. 62, 567-590.
35. Reid, J.S.G. (1985) Cell-wall storage carbohydrates in seeds-biochemistry of the seed 'gums' and 'hemicelluloses'. Adv. Bot. Res. 11, 125-155.
36. Renna, L., Hanton, S.L., Stefano, G., Bortolotti, L., Misra, V. and Brandizzi, F. (2005) Identification and characterization of AtCASP, a plant transmembrane Golgi matrix protein. Plant Mol. Biol. 58, 109-122.
37. Roach, P.J., Depaoli-Roach, A.A., Hurley, T.D. and Tagliabracci, V.S. (2012) Glycogen and its metabolism: Some new developments and old themes. Biochem. J. 441, 763-787.
38. Shi, J.Y., Blundell, T.L. and Mizuguchi, K. (2001) FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J. Mol. Biol. 310, 243-257.
39. Srivastava, M. and Kapoor, V.P. (2005) Seed galactomannans: An overview. Chem. Biodivers. 2, 295-317.
40. Suzuki, S., Li, L., Sun, Y.H. and Chiang, V.L. (2006) The cellulose synthase gene superfamily and biochemical functions of xylem-specific cellulose synthase-like genes in Populus trichocarpa. Plant Physiol. 142, 1233-1245.
41. Wang, Y., Alonso, A.P., Wilkerson, C.G. and Keegstra, K. (2012) Deep EST profiling of developing fenugreek endosperm to investigate galactomannan biosynthesis and its regulation. Plant Mol. Biol. 79, 243-258.
42. Worden, A.Z., Lee, J.H., Mock, T. et al. (2009) Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 324, 268-272.
43. Yin, Y., Huang, J. and Xu, Y. (2009) The cellulose synthase superfamily in fully sequenced plants and algae. BMC Plant Biol. 9, 99.