메뉴 건너뛰기




Volumn 83, Issue 2, 2013, Pages 494-503

Naturalized Escherichia coli from New Zealand wetland and stream environments

Author keywords

Biofilm; Environmental; Indicator; Multilocus sequence typing

Indexed keywords

BIOFILM; BIOINDICATOR; COLIFORM BACTERIUM; DATABASE; GENETIC ANALYSIS; GENETIC VARIATION; GENOTYPE; GROWTH RATE; PHYLOGENETICS; STREAMWATER; SUBPOPULATION; WATER QUALITY; WETLAND;

EID: 84871950118     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12010     Document Type: Article
Times cited : (20)

References (40)
  • 1
    • 20444419320 scopus 로고    scopus 로고
    • Persistence and differential survival of fecal indicator bacteria in subtropical waters and sediments
    • Anderson KL, Whitlock JE & Harwood VJ (2005) Persistence and differential survival of fecal indicator bacteria in subtropical waters and sediments. Appl Environ Microbiol 71: 3041-3048.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3041-3048
    • Anderson, K.L.1    Whitlock, J.E.2    Harwood, V.J.3
  • 2
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: an agglomerative method for the construction of phylogenetic networks
    • Bryant D & Moulton V (2004) Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol Biol Evol 21: 255-265.
    • (2004) Mol Biol Evol , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 3
    • 0035054443 scopus 로고    scopus 로고
    • Strain-specific differentiation of environmental Escherichia coli isolates via denaturing gradient gel electrophoresis (DGGE) analysis of the 16S-23S intergenic spacer region
    • Buchan A, Alber M & Hodson RE (2001) Strain-specific differentiation of environmental Escherichia coli isolates via denaturing gradient gel electrophoresis (DGGE) analysis of the 16S-23S intergenic spacer region. FEMS Microbiol Ecol 35: 313-321.
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 313-321
    • Buchan, A.1    Alber, M.2    Hodson, R.E.3
  • 4
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil EJ & Spratt BG (2001) Recombination and the population structures of bacterial pathogens. Annu Rev Microbiol 55: 561-590.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 5
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil EJ, Li BC, Aanensen DM, Hanage WP & Spratt BG (2004) eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacteriol 186: 1518-1530.
    • (2004) J Bacteriol , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 6
    • 0034996147 scopus 로고    scopus 로고
    • Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination
    • Gordon DM (2001) Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination. Microbiology 147: 1079-1085.
    • (2001) Microbiology , vol.147 , pp. 1079-1085
    • Gordon, D.M.1
  • 7
    • 0032822614 scopus 로고    scopus 로고
    • The genetic structure of enteric bacteria from Australian mammals
    • Gordon DM & Lee J (1999) The genetic structure of enteric bacteria from Australian mammals. Microbiology 145: 2673-2682.
    • (1999) Microbiology , vol.145 , pp. 2673-2682
    • Gordon, D.M.1    Lee, J.2
  • 8
    • 0036264202 scopus 로고    scopus 로고
    • The genetic structure of Escherichia coli populations in primary and secondary habitats
    • Gordon DM, Bauer S & Johnson JR (2002) The genetic structure of Escherichia coli populations in primary and secondary habitats. Microbiology 148: 1513-1522.
    • (2002) Microbiology , vol.148 , pp. 1513-1522
    • Gordon, D.M.1    Bauer, S.2    Johnson, J.R.3
  • 9
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S & Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696.
    • (2003) Syst Biol , vol.52 , pp. 696
    • Guindon, S.1    Gascuel, O.2
  • 10
    • 0025734993 scopus 로고
    • Soil: the environmental source of Escherichia coli and enterococci in Hawaii's streams
    • Hardina CM & Fujioka RS (1991) Soil: the environmental source of Escherichia coli and enterococci in Hawaii's streams. Environ Toxicol Water Qual 6: 185-195.
    • (1991) Environ Toxicol Water Qual , vol.6 , pp. 185-195
    • Hardina, C.M.1    Fujioka, R.S.2
  • 11
    • 34547398209 scopus 로고    scopus 로고
    • Assumptions and limitations associated with microbial source tracking methods
    • Santo Domingo JW & Sadowsky MJ, eds) - ASM Press, Washington, DC.
    • Harwood VJ (2007) Assumptions and limitations associated with microbial source tracking methods. Microbial Source Tracking (Santo Domingo JW & Sadowsky MJ, eds), pp. 33-64. ASM Press, Washington, DC.
    • (2007) Microbial Source Tracking , pp. 33-64
    • Harwood, V.J.1
  • 13
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH & Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23: 254-267.
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 14
    • 33644853450 scopus 로고    scopus 로고
    • Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior Watersheds
    • Ishii S, Ksoll WB, Hicks RE & Sadowsky MJ (2006) Presence and growth of naturalized Escherichia coli in temperate soils from Lake Superior Watersheds. Appl Environ Microbiol 72: 612-621.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 612-621
    • Ishii, S.1    Ksoll, W.B.2    Hicks, R.E.3    Sadowsky, M.J.4
  • 15
    • 84871997809 scopus 로고    scopus 로고
    • Evaluation of Escherichia coli population dynamics within a constructed wetland receiving subsurface pastoral drainage. Masters Thesis, University of Auckland, Auckland.
    • Jennings SJ (2008) Evaluation of Escherichia coli population dynamics within a constructed wetland receiving subsurface pastoral drainage. Masters Thesis, University of Auckland, Auckland.
    • (2008)
    • Jennings, S.J.1
  • 16
  • 17
    • 34250818744 scopus 로고    scopus 로고
    • Presence and sources of fecal coliform bacteria in epilithic periphyton communities of Lake Superior
    • Ksoll WB, Ishii S, Sadowsky MJ & Hicks RE (2007) Presence and sources of fecal coliform bacteria in epilithic periphyton communities of Lake Superior. Appl Environ Microbiol 73: 3771-3778.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3771-3778
    • Ksoll, W.B.1    Ishii, S.2    Sadowsky, M.J.3    Hicks, R.E.4
  • 18
    • 33846264492 scopus 로고    scopus 로고
    • Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling
    • Lacher DW, Steinsland H, Blank TE, Donnenberg MS & Whittam TS (2007) Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling. J Bacteriol 189: 342-350.
    • (2007) J Bacteriol , vol.189 , pp. 342-350
    • Lacher, D.W.1    Steinsland, H.2    Blank, T.E.3    Donnenberg, M.S.4    Whittam, T.S.5
  • 19
    • 23744433384 scopus 로고    scopus 로고
    • Statistical analyses: possible reasons for unreliability of source tracking efforts
    • Lasalde C, Rodriguez R & Toranzos GA (2005) Statistical analyses: possible reasons for unreliability of source tracking efforts. Appl Environ Microbiol 71: 4690-4695.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4690-4695
    • Lasalde, C.1    Rodriguez, R.2    Toranzos, G.A.3
  • 20
    • 66749103259 scopus 로고    scopus 로고
    • A comparison of bacteria and benthic invertebrates as indicators of ecological health in streams
    • Lear G, Boothroyd IKG, Turner SJ, Roberts K & Lewis GD (2009) A comparison of bacteria and benthic invertebrates as indicators of ecological health in streams. Freshw Biol 54: 1532-1543.
    • (2009) Freshw Biol , vol.54 , pp. 1532-1543
    • Lear, G.1    Boothroyd, I.K.G.2    Turner, S.J.3    Roberts, K.4    Lewis, G.D.5
  • 21
    • 0034770778 scopus 로고    scopus 로고
    • Advances in the bacteriology of the coliform group: their suitability as markers of microbial water safety
    • Leclerc H, Mossel DA, Edberg SC & Struijk CB (2001) Advances in the bacteriology of the coliform group: their suitability as markers of microbial water safety. Annu Rev Microbiol 55: 201.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 201
    • Leclerc, H.1    Mossel, D.A.2    Edberg, S.C.3    Struijk, C.B.4
  • 22
    • 4143079488 scopus 로고    scopus 로고
    • Genetic diversity of Escherichia coli isolated from urban rivers and beach water
    • McLellan SL (2004) Genetic diversity of Escherichia coli isolated from urban rivers and beach water. Appl Environ Microbiol 70: 4658-4665.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4658-4665
    • McLellan, S.L.1
  • 23
    • 0038221147 scopus 로고    scopus 로고
    • Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting
    • McLellan SL, Daniels AD & Salmore AK (2003) Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting. Appl Environ Microbiol 69: 2587-2594.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 2587-2594
    • McLellan, S.L.1    Daniels, A.D.2    Salmore, A.K.3
  • 24
    • 4444356159 scopus 로고    scopus 로고
    • Source tracking fecal bacteria in water: a critical review of current methods
    • Meays CL, Broersma K, Nordin R & Mazumder A (2004) Source tracking fecal bacteria in water: a critical review of current methods. J Environ Manage 73: 71-79.
    • (2004) J Environ Manage , vol.73 , pp. 71-79
    • Meays, C.L.1    Broersma, K.2    Nordin, R.3    Mazumder, A.4
  • 25
    • 84871988602 scopus 로고    scopus 로고
    • Source tracking and transport of microbial pollution in estuarine oyster farms. Doctoral dissertation Thesis, University of Auckland, Auckland.
    • Molloy SL (2005) Source tracking and transport of microbial pollution in estuarine oyster farms. Doctoral dissertation Thesis, University of Auckland, Auckland.
    • (2005)
    • Molloy, S.L.1
  • 26
    • 84871978366 scopus 로고    scopus 로고
    • New Zealand Ministry for the Environment Ministry for the Environment, Wellington.
    • New Zealand Ministry for the Environment (2009) Our Rivers: Trends in Water Quality. Ministry for the Environment, Wellington.
    • (2009) Our Rivers: Trends in Water Quality
  • 27
    • 14044274282 scopus 로고    scopus 로고
    • EcMLST: an online database for multi locus sequence typing of pathogenic Escherichia coli (IEEE, eds) - Computational Systems Bioinformatics Conference, 2004.
    • Qi W, Lacher DW, Bumbaugh AC, Hyma KE, Ouellette LM, Large TM, Tarr CL & Whittam TS (2004) EcMLST: an online database for multi locus sequence typing of pathogenic Escherichia coli (IEEE, eds), pp. 520-521. Computational Systems Bioinformatics Conference, 2004.
    • (2004) , pp. 520-521
    • Qi, W.1    Lacher, D.W.2    Bumbaugh, A.C.3    Hyma, K.E.4    Ouellette, L.M.5    Large, T.M.6    Tarr, C.L.7    Whittam, T.S.8
  • 28
    • 0020891851 scopus 로고
    • Escherichia coli habitats, cell types, and molecular mechanisms of gene control
    • Savageau MA (1983) Escherichia coli habitats, cell types, and molecular mechanisms of gene control. Am Nat 122: 732-744.
    • (1983) Am Nat , vol.122 , pp. 732-744
    • Savageau, M.A.1
  • 32
    • 10444224623 scopus 로고    scopus 로고
    • Displaying the relatedness among isolates of bacterial species - the eBURST approach
    • Spratt BG, Hanage WP, Li B, Aanensen DM & Feil EJ (2004) Displaying the relatedness among isolates of bacterial species - the eBURST approach. FEMS Microbiol Lett 241: 129-134.
    • (2004) FEMS Microbiol Lett , vol.241 , pp. 129-134
    • Spratt, B.G.1    Hanage, W.P.2    Li, B.3    Aanensen, D.M.4    Feil, E.J.5
  • 33
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 34
    • 34547702305 scopus 로고    scopus 로고
    • Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches
    • Walk ST, Alm EW, Calhoun LM, Mladonicky JM & Whittam TS (2007) Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches. Environ Microbiol 9: 2274-2288.
    • (2007) Environ Microbiol , vol.9 , pp. 2274-2288
    • Walk, S.T.1    Alm, E.W.2    Calhoun, L.M.3    Mladonicky, J.M.4    Whittam, T.S.5
  • 36
    • 0141704576 scopus 로고    scopus 로고
    • Foreshore sand as a source of Escherichia coli in Nearshore water of a Lake Michigan Beach
    • Whitman RL & Nevers MB (2003) Foreshore sand as a source of Escherichia coli in Nearshore water of a Lake Michigan Beach. Appl Environ Microbiol 69: 5555-5562.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5555-5562
    • Whitman, R.L.1    Nevers, M.B.2
  • 37
    • 33751004137 scopus 로고    scopus 로고
    • Examination of the watershed-wide distribution of Escherichia coli along Southern Lake Michigan: an integrated approach
    • Whitman RL, Nevers MB & Byappanahalli MN (2006) Examination of the watershed-wide distribution of Escherichia coli along Southern Lake Michigan: an integrated approach. Appl Environ Microbiol 72: 7301-7310.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 7301-7310
    • Whitman, R.L.1    Nevers, M.B.2    Byappanahalli, M.N.3
  • 38
    • 0024554949 scopus 로고
    • Clonal dynamics of Escherichia coli in its natural habitat
    • Whittam TS (1989) Clonal dynamics of Escherichia coli in its natural habitat. Antonie Van Leeuwenhoek 55: 23-32.
    • (1989) Antonie Van Leeuwenhoek , vol.55 , pp. 23-32
    • Whittam, T.S.1
  • 39
    • 42149088706 scopus 로고    scopus 로고
    • Molecular subtyping, source tracking, and food safety
    • Santo Domingo JW & Sadowsky MJ, eds) - ASM Press, Washington, DC.
    • Whittam TS & Bergholz TM (2007) Molecular subtyping, source tracking, and food safety. Microbial Source Tracking (Santo Domingo JW & Sadowsky MJ, eds), pp. 93-136. ASM Press, Washington, DC.
    • (2007) Microbial Source Tracking , pp. 93-136
    • Whittam, T.S.1    Bergholz, T.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.