Investigation of the amycolatopsis sp. strain ATCC 39116 vanillin dehydrogenase and its impact on the biotechnical production of vanillin

Applied and Environmental Microbiology

Volumn 79, Issue 1, 2013, Pages 81-90

  Fleige, Christian ^a   Hansen, Gunda ^a   Kroll, Jens ^a   Steinbüchel, Alexander ^a,b  

^a UNIVERSITY OF MÜNSTER   (Germany)

^b KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGICAL PRODUCTION; CELL-WALL COMPONENTS; CINNAMALDEHYDE; DEHYDROGENASE ACTIVITY; DELETION MUTANTS; ELECTROPHORETIC HOMOGENEITY; FERULIC ACIDS; GENOME SEQUENCES; METABOLIC ACTIVITY; VANILLIC ACIDS;

BIOINFORMATICS; ESCHERICHIA COLI; METABOLISM;

ALDEHYDES;

ALDEHYDE DEHYDROGENASE; BACTERIAL DNA; BENZALDEHYDE DERIVATIVE; COUMARIC ACID; FERULIC ACID; NICOTINAMIDE ADENINE DINUCLEOTIDE; RECOMBINANT PROTEIN; VANILLIC ACID; VANILLIN; VANILLIN DEHYDROGENASE;

ANTIBIOTICS; BACTERIUM; BIOINFORMATICS; BIOTECHNOLOGY; BIOTRANSFORMATION; CATABOLISM; ENZYME ACTIVITY; GENE EXPRESSION;

ACTINOMYCETALES; ARTICLE; BIOTECHNOLOGY; CHEMISTRY; COENZYME; DNA SEQUENCE; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; GENE DELETION; GENE EXPRESSION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLIC ENGINEERING; METABOLISM; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PH; TEMPERATURE;

ACTINOMYCETALES; ALDEHYDE OXIDOREDUCTASES; BENZALDEHYDES; BIOTECHNOLOGY; COENZYMES; COUMARIC ACIDS; DNA, BACTERIAL; ESCHERICHIA COLI; GENE DELETION; GENE EXPRESSION; HYDROGEN-ION CONCENTRATION; INDUSTRIAL MICROBIOLOGY; METABOLIC ENGINEERING; MOLECULAR SEQUENCE DATA; NAD; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, DNA; SUBSTRATE SPECIFICITY; TEMPERATURE; VANILLIC ACID;

AMYCOLATOPSIS SP.; ESCHERICHIA COLI;

EID: 84871894730     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02358-12     Document Type: Article

References (44)

1. Converti A, Aliakbarian B, Domínguez JM, Vázquez GB, Perego P. 2010. Microbial production of biovanillin. Braz. J. Microbiol. 41:519-530.
2. Priefert H, Rabenhorst J, Steinbüchel A. 2001. Biotechnological production of vanillin. Appl. Microbiol. Biotechnol. 56:296-314.
3. European Commission. 2008. European Commission regulation no 1334/2008 of the European Parliament and of the Council of 16 December 2008 on flavourings and certain food ingredients with flavouring properties for use in and on foods and amending regulation (EC) no 1601/91 of the Council, regulations (EC) no 2232/96 and (EC) no 110/2008 and directive 2000/13/EC.
4. Hansen EH, Møller BL, Kock GR, Bünner CM, Kristensen C, Jensen OR, Okkels FT, Olsen CE, Motawia MS, Hansen J. 2009. De novo biosynthesis of vanillin in fission yeast (Schizosaccharomyces pombe) and baker's yeast (Saccharomyces cerevisiae). Appl. Environ. Microbiol. 75: 2765-2774.
5. Narbad A, Gasson MJ. 1998. Metabolism of ferulic acid via vanillin using a novel CoA-dependent pathway in a newly-isolated strain of Pseudomonas fluorescens. Microbiology 144:1397-1405.
6. Overhage J, Priefert H, Steinbüchel A. 1999. Biochemical and genetic analyses of ferulic acid catabolism in Pseudomonas sp. strain HR199. Appl. Environ. Microbiol. 65:4837-4847.
7. Plaggenborg R, Overhage J, Loos A, Archer JAC, Lessard P, Sinskey AJ, Steinbüchel A, Priefert H. 2006. Potential of Rhodococcus strains for biotechnological vanillin production from ferulic acid and eugenol. Appl. Microbiol. Biotechnol. 72:745-755.
8. Plaggenborg R, Overhage J, Steinbüchel A, Priefert H. 2003. Functional analyses of genes involved in the metabolism of ferulic acid in Pseudomonas putida KT2440. Appl. Microbiol. Biotechnol. 61:528-535.
9. Tilay A, Bule M, Annapure U. 2010. Production of biovanillin by onestep biotransformation using fungus Pycnoporous cinnabarinus. J. Agric. Food Chem. 58:4401-4405.
10. Barghini P, Di Gioia D, Fava F, Ruzzi M. 2007. Vanillin production using metabolically engineered Escherichia coli under non-growing conditions. Microb. Cell Fact. 6:13. doi:10.1186/1475-2859-6-13.
11. Overhage J, Steinbüchel A, Priefert H. 2003. Highly efficient biotransformation of eugenol to ferulic acid and further conversion to vanillin in recombinant strains of Escherichia coli. Appl. Environ. Microbiol. 69: 6569-6576.
12. Muheim A, Müller B, Münch Wetli TM. February 2006. Process for the production of vanillin. European Union patent EP0885968.
13. Rabenhorst J, Hopp R. November 2002. Process for the preparation of vanillin and suitable microorganisms. European Union patent EP0761817.
14. Achterholt S, Priefert H, Steinbüchel A. 2000. Identification of Amycolatopsis sp. strain HR167 genes, involved in the bioconversion of ferulic acid to vanillin. Appl. Microbiol. Biotechnol. 54:799-807.
15. Sutherland JB, Crawford DL, Pometto AL. 1983. Metabolism of cinnamic, p-coumaric, and ferulic acids by Streptomyces setonii. Can. J. Microbiol. 29:1253-1257.
16. Davis JR, Goodwin LA, Woyke T, Teshima H, Bruce D, Detter C, Tapia R, Han S, Han J, Pitluck S, Nolan M, Mikhailova N, Land ML, Sello JK. 2012. Genome sequence of Amycolatopsis sp. strain ATCC 39116, a plant biomass-degrading actinomycete. J. Bacteriol. 194:2396-2397.
17. Di Gioia D, Luziatelli F, Negroni A, Ficca AG, Fava F, Ruzzi M. 2010. Metabolic engineering of Pseudomonas fluorescens for the production of vanillin from ferulic acid. J. Biotechnol. 156:309-316.
18. Masai E, Yamamoto Y, Inoue T, Takamura K, Hara H, Kasai D, Katayama Y, Fukuda M. 2007. Characterization of ligV essential for catabolism of vanillin by Sphingomonas paucimobilis SYK-6. Biosci. Biotechnol. Biochem. 71:2487-2492.
19. Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
20. Kroll J, Klinter S, Steinbüchel A. 2011. A novel plasmid addiction system for large-scale production of cyanophycin in Escherichia coli using mineral salts medium. Appl. Microbiol. Biotechnol. 89:593-604.
21. Hiessl S, Schuldes J, Thürmer A, Halbsguth T, Bröker D, Angelov A, Liebl W, Daniel R, Steinbüchel A. 2012. Involvement of two latexclearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2. Appl. Environ. Microbiol. 78:2874-2887.
22. Priefert H, Achterholt S, Steinbüchel A. 2002. Transformation of the Pseudonocardiaceae Amycolatopsis sp. strain HR167 is highly dependent on the physiological state of the cells. Appl. Microbiol. Biotechnol. 58: 454-460.
23. Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
24. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
25. Weber K, Osborn M. 1969. The reliability of molecular weight determinations by dodecyl sulfate-polyacrylamide gel electrophoresis. J. Biol. Chem. 244:4406-4412.
26. Towbin H, Staehelin T, Gordon J. 1992. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. 1979. Biotechnology 24:145-149.
27. Gasson MJ, Kitamura Y, McLauchlan WR, Narbad A, Parr AJ, Parsons ELH, Payne J, Rhodes MJC, Walton NJ. 1998. Metabolism of ferulic acid to vanillin: a bacterial gene of the enoyl-SCoA hydratase/isomerase superfamily encodes an enzyme for the hydration and cleavage of a hydroxycinnamic acid SCoA thioester. J. Biol. Chem. 273:4163-4170.
28. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
29. Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schaffer AA, Yu YK. 2005. Protein database searches using compositionally adjusted substitution matrices. FEBS J. 272:5101-5109.
30. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
31. Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, Bairoch A. 2003. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31:3784-3788.
32. + oxidoreductase. Appl. Biochem. Biotechnol. 98-100:415-428.
33. Becker J, Wittmann C. 13 January 2012. Systems and synthetic metabolic engineering for amino acid production-the heartbeat of industrial strain development. Curr. Opin. Biotechnol. doi:10.1016/j.copbio.2011.12.025.
34. Wendisch VF, Bott M, Eikmanns BJ. 2006. Metabolic engineering of Escherichia coli and Corynebacterium glutamicum for biotechnological production of organic acids and amino acids. Curr. Opin. Microbiol. 9:268-274.
35. Priefert H, Rabenhorst J, Steinbüchel A. 1997. Molecular characterization of genes of Pseudomonas sp. strain HR199 involved in bioconversion of vanillin to protocatechuate. J. Bacteriol. 179:2595-2607.
36. Venturi V, Zennaro F, Degrassi G, Okeke BC, Bruschi CV. 1998. Genetics of ferulic acid bioconversion to protocatechuic acid in plantgrowth-promoting Pseudomonas putida WCS358. Microbiology 144:965-973.
37. Martínez-Cuesta MDC, Payne J, Hanniffy SB, Gasson MJ, Narbad A. 2005. Functional analysis of the vanillin pathway in a vdh-negative mutant strain of Pseudomonas fluorescens AN103. Enzyme Microb. Technol. 37: 131-138.
38. Oliynyk M, Samborskyy M, Lester JB, Mironenko T, Scott N, Dickens S, Haydock SF, Leadlay PF. 2007. Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. Nat. Biotechnol. 25:447-453.
39. Muheim A, Lerch K. 1999. Towards a high-yield bioconversion of ferulic acid to vanillin. Appl. Microbiol. Biotechnol. 51:456-461.
40. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
41. Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VAP, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Lee PC, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen J, Timmis KN, Düsterhöft A, Tümmler B, Fraser CM. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:799-808.
42. Masai E, Harada K, Peng X, Kitayama H, Katayama Y, Fukuda M. 2002. Cloning and characterization of the ferulic acid catabolic genes of Sphingomonas paucimobilis SYK-6. Appl. Environ. Microbiol. 68:4416-4424.
43. Sekine M, Tanikawa S, Omata S, Saito M, Fujisawa T, Tsukatani N, Tajima T, Sekigawa T, Kosugi H, Matsuo Y, Nishiko R, Imamura K, Ito M, Narita H, Tago S, Fujita N, Harayama S. 2006. Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4. Environ. Microbiol. 8:334-346.
44. McLeod MP, Warren RL, Hsiao WW, Araki N, Myhre M, Fernandes C, Miyazawa D, Wong W, Lillquist AL, Wang D, Dosanjh M, Hara H, Petrescu A, Morin RD, Yang G, Stott JM, Schein JE, Shin H, Smailus D, Siddiqui AS, Marra MA, Jones SJ, Holt R, Brinkman FS, Miyauchi K, Fukuda M, Davies JE, Mohn WW, Eltis LD. 2006. The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse. Proc. Natl. Acad. Sci. U. S. A. 103:15582-15587.