-
1
-
-
34447339387
-
Nested Containment List (NCList): A new algorithm for accelerating interval query of genome alignment and interval databases
-
DOI 10.1093/bioinformatics/btl647
-
Alekseyenko, A.V. and Lee, C.J. (2007) Nested containment list (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases. Bioinformatics, 23, 1386-1393. (Pubitemid 47050521)
-
(2007)
Bioinformatics
, vol.23
, Issue.11
, pp. 1386-1393
-
-
Alekseyenko, A.V.1
Lee, C.J.2
-
2
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
ENCODE Project Consortium
-
ENCODE Project Consortium (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
3
-
-
84863709495
-
Exploring massive, genome scale datasets with the GenometriCorr package
-
Favorov, A. et al. (2012) Exploring massive, genome scale datasets with the GenometriCorr package. PLoS Comput. Biol., 8, e1002529.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Favorov, A.1
-
4
-
-
78650410139
-
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
-
Gerstein, M.B. et al. (2010) Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science, 330, 1775-1787.
-
(2010)
Science
, vol.330
, pp. 1775-1787
-
-
Gerstein, M.B.1
-
5
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
DOI 10.1101/gr.4086505
-
Giardine, B. et al. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res., 15, 1451-1455. (Pubitemid 41400913)
-
(2005)
Genome Research
, vol.15
, Issue.10
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
Miller, W.11
Kent, W.J.12
Nekrutenko, A.13
-
6
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
8
-
-
68549104404
-
The sequence alignment/map (SAM) format and SAMtools
-
Li, H. et al. (2009) The sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2049.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2049
-
-
Li, H.1
-
9
-
-
74049106511
-
A parallel plane sweep algorithm for multi-core systems
-
ACM New York, NY, USA.
-
McKenney, M. and McGuire, T. (2009) A parallel plane sweep algorithm for multi-core systems. In Proceedings of the 17th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems. GIS '09, pp. 392-395. ACM New York, NY, USA.
-
(2009)
Proceedings of the 17th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems. GIS '09
, pp. 392-395
-
-
McKenney, M.1
McGuire, T.2
-
10
-
-
79959718248
-
High performance and scalable radix sorting: A case study of implementing dynamic parallelism for GPU computing
-
Merrill, D. and Grimshaw, A. (2011) High performance and scalable radix sorting: a case study of implementing dynamic parallelism for GPU computing. Parallel Process. Lett., 21, 245-272.
-
(2011)
Parallel Process. Lett.
, vol.21
, pp. 245-272
-
-
Merrill, D.1
Grimshaw, A.2
-
11
-
-
0020202558
-
Finding repeated elements
-
Mirsa, J. and Gries, D. (1982) Finding repeated elements. Sci. Comput. Progr., 2, 143-152.
-
(1982)
Sci. Comput. Progr.
, vol.2
, pp. 143-152
-
-
Mirsa, J.1
Gries, D.2
-
12
-
-
84864147180
-
BEDOPS: High performance genomic feature operations
-
Neph, S. et al. (2012) BEDOPS: high performance genomic feature operations. Bioinformatics, 28, 1919-1920.
-
(2012)
Bioinformatics
, vol.28
, pp. 1919-1920
-
-
Neph, S.1
-
13
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A.R. and Hall, I.M. (2011) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
-
(2011)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
14
-
-
39049191299
-
Fjoin: Simple and efficient computation of feature overlaps
-
Richardson, J.E. (2006) fjoin: simple and efficient computation of feature overlaps. J. Computat. Biol., 13, 1457-1464.
-
(2006)
J. Computat. Biol.
, vol.13
, pp. 1457-1464
-
-
Richardson, J.E.1
-
16
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
IEEE. The 1000 Genomes Project Consortium
-
IEEE. The 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
17
-
-
77950380492
-
Parallel white noise generation on a GPU via cryptographic hash
-
ACM, New York, NY, USA
-
Tzeng, S. and Wei, L.Y. (2008) Parallel white noise generation on a GPU via cryptographic hash. In Proceedings of the 2008 Symposium on Interactive 3D Graphics and Games. I3D '08, pp. 79-87. ACM, New York, NY, USA.
-
(2008)
Proceedings of the 2008 Symposium on Interactive 3D Graphics and Games. I3D '08
, pp. 79-87
-
-
Tzeng, S.1
Wei, L.Y.2
|