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Volumn 29, Issue 1, 2013, Pages 1-7

Binary Interval Search: A scalable algorithm for counting interval intersections

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; DNA SEQUENCE; GENOMICS; METHODOLOGY; MONTE CARLO METHOD; SEQUENCE ALIGNMENT;

EID: 84871808580     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts652     Document Type: Article
Times cited : (30)

References (17)
  • 1
    • 34447339387 scopus 로고    scopus 로고
    • Nested Containment List (NCList): A new algorithm for accelerating interval query of genome alignment and interval databases
    • DOI 10.1093/bioinformatics/btl647
    • Alekseyenko, A.V. and Lee, C.J. (2007) Nested containment list (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases. Bioinformatics, 23, 1386-1393. (Pubitemid 47050521)
    • (2007) Bioinformatics , vol.23 , Issue.11 , pp. 1386-1393
    • Alekseyenko, A.V.1    Lee, C.J.2
  • 2
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • ENCODE Project Consortium
    • ENCODE Project Consortium (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799-816.
    • (2007) Nature , vol.447 , pp. 799-816
  • 3
    • 84863709495 scopus 로고    scopus 로고
    • Exploring massive, genome scale datasets with the GenometriCorr package
    • Favorov, A. et al. (2012) Exploring massive, genome scale datasets with the GenometriCorr package. PLoS Comput. Biol., 8, e1002529.
    • (2012) PLoS Comput. Biol. , vol.8
    • Favorov, A.1
  • 4
    • 78650410139 scopus 로고    scopus 로고
    • Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
    • Gerstein, M.B. et al. (2010) Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science, 330, 1775-1787.
    • (2010) Science , vol.330 , pp. 1775-1787
    • Gerstein, M.B.1
  • 6
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent, W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
    • (2002) Genome Res. , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 8
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map (SAM) format and SAMtools
    • Li, H. et al. (2009) The sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2049.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2049
    • Li, H.1
  • 10
    • 79959718248 scopus 로고    scopus 로고
    • High performance and scalable radix sorting: A case study of implementing dynamic parallelism for GPU computing
    • Merrill, D. and Grimshaw, A. (2011) High performance and scalable radix sorting: a case study of implementing dynamic parallelism for GPU computing. Parallel Process. Lett., 21, 245-272.
    • (2011) Parallel Process. Lett. , vol.21 , pp. 245-272
    • Merrill, D.1    Grimshaw, A.2
  • 11
    • 0020202558 scopus 로고
    • Finding repeated elements
    • Mirsa, J. and Gries, D. (1982) Finding repeated elements. Sci. Comput. Progr., 2, 143-152.
    • (1982) Sci. Comput. Progr. , vol.2 , pp. 143-152
    • Mirsa, J.1    Gries, D.2
  • 12
    • 84864147180 scopus 로고    scopus 로고
    • BEDOPS: High performance genomic feature operations
    • Neph, S. et al. (2012) BEDOPS: high performance genomic feature operations. Bioinformatics, 28, 1919-1920.
    • (2012) Bioinformatics , vol.28 , pp. 1919-1920
    • Neph, S.1
  • 13
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2011) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2011) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 14
    • 39049191299 scopus 로고    scopus 로고
    • Fjoin: Simple and efficient computation of feature overlaps
    • Richardson, J.E. (2006) fjoin: simple and efficient computation of feature overlaps. J. Computat. Biol., 13, 1457-1464.
    • (2006) J. Computat. Biol. , vol.13 , pp. 1457-1464
    • Richardson, J.E.1
  • 16
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • IEEE. The 1000 Genomes Project Consortium
    • IEEE. The 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.