-
1
-
-
34547911052
-
Chemistry of acetyl transfer by histone modifying enzymes: structure, mechanism and implications for effector design
-
Hodawadekar SC, Marmorstein R, (2007) Chemistry of acetyl transfer by histone modifying enzymes: structure, mechanism and implications for effector design. Oncogene 26: 5528-5540.
-
(2007)
Oncogene
, vol.26
, pp. 5528-5540
-
-
Hodawadekar, S.C.1
Marmorstein, R.2
-
2
-
-
66249126298
-
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans
-
Arnesen T, Van Damme P, Polevoda B, Helsens K, Evjenth R, et al. (2009) Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. Proc Natl Acad Sci USA 106: 8157-8162.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 8157-8162
-
-
Arnesen, T.1
Van Damme, P.2
Polevoda, B.3
Helsens, K.4
Evjenth, R.5
-
3
-
-
79960946480
-
NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation
-
Van Damme P, Hole K, Pimenta-Marques A, Helsens K, Vandekerckhove J, et al. (2011) NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation. PLoS Genet 7: e1002169.
-
(2011)
PLoS Genet
, vol.7
-
-
Van Damme, P.1
Hole, K.2
Pimenta-Marques, A.3
Helsens, K.4
Vandekerckhove, J.5
-
4
-
-
84859490749
-
Protein N-terminal acetyltransferases: when the start matters
-
Starheim KK, Gevaert K, Arnesen T, (2012) Protein N-terminal acetyltransferases: when the start matters. Trends Biochem Sci 37: 152-161.
-
(2012)
Trends Biochem Sci
, vol.37
, pp. 152-161
-
-
Starheim, K.K.1
Gevaert, K.2
Arnesen, T.3
-
5
-
-
0016617116
-
Acetylation of Protein N-terminal amino groups structural observations on alphaamino acetylated proteins
-
Jornvall H, (1975) Acetylation of Protein N-terminal amino groups structural observations on alphaamino acetylated proteins. J Theor Biol 55: 1-12.
-
(1975)
J Theor Biol
, vol.55
, pp. 1-12
-
-
Jornvall, H.1
-
6
-
-
1442323729
-
N-terminal ubiquitination: more protein substrates join in
-
Ciechanover A, Ben-Saadon R, (2004) N-terminal ubiquitination: more protein substrates join in. Trends Cell Biol 14: 103-106.
-
(2004)
Trends Cell Biol
, vol.14
, pp. 103-106
-
-
Ciechanover, A.1
Ben-Saadon, R.2
-
7
-
-
77149120798
-
N-terminal acetylation of cellular proteins creates specific degradation signals
-
Hwang CS, Shemorry A, Varshavsky A, (2010) N-terminal acetylation of cellular proteins creates specific degradation signals. Science 327: 973-977.
-
(2010)
Science
, vol.327
, pp. 973-977
-
-
Hwang, C.S.1
Shemorry, A.2
Varshavsky, A.3
-
8
-
-
80555131132
-
N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex
-
Scott DC, Monda JK, Bennett EJ, Harper JW, Schulman BA, (2011) N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex. Science 334: 674-678.
-
(2011)
Science
, vol.334
, pp. 674-678
-
-
Scott, D.C.1
Monda, J.K.2
Bennett, E.J.3
Harper, J.W.4
Schulman, B.A.5
-
9
-
-
2342546616
-
Targeting of the Arf-like GTPase Arl3p to the Golgi requires N-terminal acetylation and the membrane protein Sys1p
-
Behnia R, Panic B, Whyte JR, Munro S, (2004) Targeting of the Arf-like GTPase Arl3p to the Golgi requires N-terminal acetylation and the membrane protein Sys1p. Nat Cell Biol 6: 405-413.
-
(2004)
Nat Cell Biol
, vol.6
, pp. 405-413
-
-
Behnia, R.1
Panic, B.2
Whyte, J.R.3
Munro, S.4
-
10
-
-
71449089622
-
A synopsis of eukaryotic Nalpha-terminal acetyltransferases: nomenclature, subunits and substrates
-
Polevoda B, Arnesen T, Sherman F, (2009) A synopsis of eukaryotic Nalpha-terminal acetyltransferases: nomenclature, subunits and substrates. BMC Proc 3Suppl 6: S2.
-
(2009)
BMC Proc
, vol.3
-
-
Polevoda, B.1
Arnesen, T.2
Sherman, F.3
-
11
-
-
0037462954
-
N-terminal acetyltransferases and sequence requirements for Nterminal acetylation of eukaryotic proteins
-
Polevoda B, Sherman F, (2003) N-terminal acetyltransferases and sequence requirements for Nterminal acetylation of eukaryotic proteins. J Mol Biol 325: 595-622.
-
(2003)
J Mol Biol
, vol.325
, pp. 595-622
-
-
Polevoda, B.1
Sherman, F.2
-
12
-
-
79955761504
-
Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase
-
M110.004580
-
Van Damme P, Evjenth R, Foyn H, Demeyer K, De Bock PJ, et al. (2011) Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of N(alpha)-acetyltransferases and point to hNaa10p as the post-translational actin N(alpha)-acetyltransferase. Mol Cell Proteomics 10: M110.004580.
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Van Damme, P.1
Evjenth, R.2
Foyn, H.3
Demeyer, K.4
De Bock, P.J.5
-
13
-
-
71449101084
-
Human Naa50p (Nat5/San) displays both protein N alpha- and N epsilon-acetyltransferase activity
-
Evjenth R, Hole K, Karlsen OA, Ziegler M, Arnesen T, et al. (2009) Human Naa50p (Nat5/San) displays both protein N alpha- and N epsilon-acetyltransferase activity. J Biol Chem 284: 31122-31129.
-
(2009)
J Biol Chem
, vol.284
, pp. 31122-31129
-
-
Evjenth, R.1
Hole, K.2
Karlsen, O.A.3
Ziegler, M.4
Arnesen, T.5
-
14
-
-
34249731437
-
The molecular basis of glyphosate resistance by an optimized microbial acetyltransferase
-
Siehl DL, Castle LA, Gorton R, Keenan RJ, (2007) The molecular basis of glyphosate resistance by an optimized microbial acetyltransferase. J Biol Chem 282: 11446-11455.
-
(2007)
J Biol Chem
, vol.282
, pp. 11446-11455
-
-
Siehl, D.L.1
Castle, L.A.2
Gorton, R.3
Keenan, R.J.4
-
15
-
-
80054694313
-
Structure of a ternary Naa50p (NAT5/SAN) Nalphaterminal acetyltransferase complex reveals the molecular basis for substrate specific acetylation
-
Liszczak G, Arnesen T, Marmorstein R (2011) Structure of a ternary Naa50p (NAT5/SAN) Nalphaterminal acetyltransferase complex reveals the molecular basis for substrate specific acetylation. J Biol Chem.
-
(2011)
J Biol Chem
-
-
Liszczak, G.1
Arnesen, T.2
Marmorstein, R.3
-
16
-
-
80052829164
-
The Human N-Alpha-Acetyltransferase 40 (hNaa40p/hNatD) Is Conserved from Yeast and N-Terminally Acetylates Histones H2A and H4
-
Hole K, Van Damme P, Dalva M, Aksnes H, Glomnes N, et al. (2011) The Human N-Alpha-Acetyltransferase 40 (hNaa40p/hNatD) Is Conserved from Yeast and N-Terminally Acetylates Histones H2A and H4. PLoS ONE 6: e24713.
-
(2011)
PLoS ONE
, vol.6
-
-
Hole, K.1
Van Damme, P.2
Dalva, M.3
Aksnes, H.4
Glomnes, N.5
-
17
-
-
33749578940
-
Statistical potential for assessment and prediction of protein structures
-
Shen MY, Sali A, (2006) Statistical potential for assessment and prediction of protein structures. Protein Sci 15: 2507-2524.
-
(2006)
Protein Sci
, vol.15
, pp. 2507-2524
-
-
Shen, M.Y.1
Sali, A.2
-
18
-
-
54049149934
-
Identification of the human N(alpha)-acetyltransferase complex B (hNatB): a complex important for cell-cycle progression
-
Starheim KK, Arnesen T, Gromyko D, Ryningen A, Varhaug JE, et al. (2008) Identification of the human N(alpha)-acetyltransferase complex B (hNatB): a complex important for cell-cycle progression. Biochem J 415: 325-331.
-
(2008)
Biochem J
, vol.415
, pp. 325-331
-
-
Starheim, K.K.1
Arnesen, T.2
Gromyko, D.3
Ryningen, A.4
Varhaug, J.E.5
-
19
-
-
67650085001
-
Knockdown of human N alpha-terminal acetyltransferase complex C leads to p53-dependent apoptosis and aberrant human Arl8b localization
-
Starheim KK, Gromyko D, Evjenth R, Ryningen A, Varhaug JE, et al. (2009) Knockdown of human N alpha-terminal acetyltransferase complex C leads to p53-dependent apoptosis and aberrant human Arl8b localization. Mol Cell Biol 29: 3569-3581.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 3569-3581
-
-
Starheim, K.K.1
Gromyko, D.2
Evjenth, R.3
Ryningen, A.4
Varhaug, J.E.5
-
20
-
-
48849113878
-
Comparative protein structure modeling using MODELLER
-
Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, et al. (2007) Comparative protein structure modeling using MODELLER. Curr Protoc Protein Sci Chapter 2: Unit 2.9.
-
(2007)
Curr Protoc Protein Sci Chapter 2: Unit 2.9
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
-
21
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
23
-
-
79251535315
-
Graphical analysis of pH-dependent properties of proteins predicted using PROPKA
-
Rostkowski M, Olsson MH, Sondergaard CR, Jensen JH, (2011) Graphical analysis of pH-dependent properties of proteins predicted using PROPKA. BMC Struct Biol 11: 6.
-
(2011)
BMC Struct Biol
, vol.11
, pp. 6
-
-
Rostkowski, M.1
Olsson, M.H.2
Sondergaard, C.R.3
Jensen, J.H.4
-
24
-
-
0024250301
-
Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison
-
Brunger AT, Karplus M, (1988) Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison. Proteins 4: 148-156.
-
(1988)
Proteins
, vol.4
, pp. 148-156
-
-
Brunger, A.T.1
Karplus, M.2
-
25
-
-
0041784950
-
All-atom empirical force field for molecular modeling and dynamics studies of proteins
-
MacKerell A, Bashford D, Bellot M, Dunbrack RJ, Evanseck J, et al. (1998) All-atom empirical force field for molecular modeling and dynamics studies of proteins. J Phys Chem B 102: 3586-3616.
-
(1998)
J Phys Chem B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.1
Bashford, D.2
Bellot, M.3
Dunbrack, R.J.4
Evanseck, J.5
-
26
-
-
0031910020
-
Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin
-
Caves LS, Evanseck JD, Karplus M, (1998) Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin. Protein Sci 7: 649-666.
-
(1998)
Protein Sci
, vol.7
, pp. 649-666
-
-
Caves, L.S.1
Evanseck, J.D.2
Karplus, M.3
-
27
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, et al. (2005) Scalable molecular dynamics with NAMD. J Comput Chem 26: 1781-1802.
-
(2005)
J Comput Chem
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
-
28
-
-
84986512474
-
Charmm: a program for macromolecular energy, minimization, and dynamics calculations
-
Brooks B, Bruccoleri R, Olafson B, States D, Swaminathan S, et al. (1983) Charmm: a program for macromolecular energy, minimization, and dynamics calculations. J Comp Chem 4: 187-217.
-
(1983)
J Comp Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.1
Bruccoleri, R.2
Olafson, B.3
States, D.4
Swaminathan, S.5
-
29
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann U, Perera L, Berkowitz M, Darden T, Lee H, et al. (1995) A smooth particle mesh Ewald method. J Chem Phys 103: 8577-8593.
-
(1995)
J Chem Phys
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.3
Darden, T.4
Lee, H.5
-
30
-
-
33947418829
-
Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids"
-
Lafont V, Schaefer M, Stote RH, Altschuh D, Dejaegere A, (2007) Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids". Proteins 67: 418-34.
-
(2007)
Proteins
, vol.67
, pp. 418-434
-
-
Lafont, V.1
Schaefer, M.2
Stote, R.H.3
Altschuh, D.4
Dejaegere, A.5
-
31
-
-
1942539324
-
Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitors
-
Zoete V, Michielin O, Karplus M, (2003) Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitors. J Comp Aided Mol Des 17: 861-880.
-
(2003)
J Comp Aided Mol Des
, vol.17
, pp. 861-880
-
-
Zoete, V.1
Michielin, O.2
Karplus, M.3
-
32
-
-
34248562740
-
Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: application to the TCR-p-MHC complex
-
Zoete V, Michielin O, (2007) Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: application to the TCR-p-MHC complex. Proteins 67: 1026-1047.
-
(2007)
Proteins
, vol.67
, pp. 1026-1047
-
-
Zoete, V.1
Michielin, O.2
-
33
-
-
0026124585
-
Electrostatics and diffusion of molecules in solution: simulations with the university of houston brownian, dynamics program
-
Davis M, Madura J, Luty B, McCammon J, (1991) Electrostatics and diffusion of molecules in solution: simulations with the university of houston brownian, dynamics program. Comput Phys Commun 62: 187-197.
-
(1991)
Comput Phys Commun
, vol.62
, pp. 187-197
-
-
Davis, M.1
Madura, J.2
Luty, B.3
McCammon, J.4
-
34
-
-
0034521981
-
Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models
-
Kollman PA, Massova I, Reyes C, Kuhn B, Huo S, et al. (2000) Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. Acc Chem Res 33: 889-897.
-
(2000)
Acc Chem Res
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
|