Structure prediction, molecular dynamics simulation and docking studies of D-specific dehalogenase from rhizobium sp. RC1

International Journal of Molecular Sciences

Volumn 13, Issue 12, 2012, Pages 15724-15754

  Sudi, Ismaila Yada ^a   Wong, Ee Lin ^a   Joyce Tan, Kwee Hong ^b   Shamsir, Mohd Shahir ^a   Jamaluddin, Haryati ^a   Huyop, Fahrul ^a  

^a UNIVERSITI TEKNOLOGI MALAYSIA   (Malaysia)

^b UNIVERSITI KEBANGSAAN MALAYSIA   (Malaysia)

Author keywords

D stereospecific dehalogenase; DehD; Docking; Interacting residues; Molecular dynamics simulation; Rhizobium sp. RC1

Indexed keywords

2 BROMOPROPIONATE; 2 CHLOROPROPIONIC ACID; 2 HALOACID DEHALOGENASE; 2,3 DICHLOROPROPIONATE; 3 CHLOROPROPIONATE; BACTERIAL ENZYME; BROMOACETIC ACID; CHLOROACETIC ACID; DALAPON; DEHALOGENASE; HYDROLASE; PROPIONIC ACID DERIVATIVE; UNCLASSIFIED DRUG; 2-HALOACID DEHALOGENASE; BACTERIAL PROTEIN;

AMINO ACID COMPOSITION; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; DEHALOGENATION; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; ENZYME STABILITY; MOLECULAR DOCKING; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN HYDROLYSIS; PROTEIN SECONDARY STRUCTURE; PSEUDOMONAS PUTIDA; RHIZOBIUM; SEQUENCE HOMOLOGY; SITE DIRECTED MUTAGENESIS; TEMPERATURE SENSITIVITY; THREE DIMENSIONAL IMAGING; CHEMISTRY; ENZYMOLOGY; STRUCTURAL HOMOLOGY;

PSEUDOMONAS PUTIDA; RHIZOBIUM SP.;

BACTERIAL PROTEINS; CATALYTIC DOMAIN; HYDROLASES; MOLECULAR DYNAMICS SIMULATION; PSEUDOMONAS PUTIDA; RHIZOBIUM; STRUCTURAL HOMOLOGY, PROTEIN;

EID: 84871694759     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms131215724     Document Type: Article

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