-
1
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
2
-
-
77953801618
-
Target RNA-directed trimming and tailing of small silencing RNAs
-
Ameres S.L., Horwich M.D., Hung J.-H., Xu J., Ghildiyal M., Weng Z., Zamore P.D. Target RNA-directed trimming and tailing of small silencing RNAs. Science 2010, 328:1534-1539.
-
(2010)
Science
, vol.328
, pp. 1534-1539
-
-
Ameres, S.L.1
Horwich, M.D.2
Hung, J.-H.3
Xu, J.4
Ghildiyal, M.5
Weng, Z.6
Zamore, P.D.7
-
3
-
-
77951164018
-
Differential regulation of microRNA stability
-
Bail S., Swerdel M., Liu H., Jiao X., Goff L.A., Hart R.P., Kiledjian M. Differential regulation of microRNA stability. RNA 2010, 16:1032-1039.
-
(2010)
RNA
, vol.16
, pp. 1032-1039
-
-
Bail, S.1
Swerdel, M.2
Liu, H.3
Jiao, X.4
Goff, L.A.5
Hart, R.P.6
Kiledjian, M.7
-
4
-
-
8844274816
-
Symplekin and xGLD-2 are required for CPEB-mediated cytoplasmic polyadenylation
-
Barnard D.C., Ryan K., Manley J.L., Richter J.D. Symplekin and xGLD-2 are required for CPEB-mediated cytoplasmic polyadenylation. Cell 2004, 119:641-651.
-
(2004)
Cell
, vol.119
, pp. 641-651
-
-
Barnard, D.C.1
Ryan, K.2
Manley, J.L.3
Richter, J.D.4
-
5
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
6
-
-
84862778053
-
Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish
-
Bazzini A.A., Lee M.T., Giraldez A.J. Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 2012, 336:233-237.
-
(2012)
Science
, vol.336
, pp. 233-237
-
-
Bazzini, A.A.1
Lee, M.T.2
Giraldez, A.J.3
-
7
-
-
77951700391
-
Nuclear factor TDP-43 can affect selected microRNA levels
-
Buratti E., De Conti L., Stuani C., Romano M., Baralle M., Baralle F. Nuclear factor TDP-43 can affect selected microRNA levels. FEBS J. 2010, 277:2268-2281.
-
(2010)
FEBS J.
, vol.277
, pp. 2268-2281
-
-
Buratti, E.1
De Conti, L.2
Stuani, C.3
Romano, M.4
Baralle, M.5
Baralle, F.6
-
8
-
-
79955599925
-
CPEB and two poly(A) polymerases control miR-122 stability and p53 mRNA translation
-
Burns D.M., D'Ambrogio A., Nottrott S., Richter J.D. CPEB and two poly(A) polymerases control miR-122 stability and p53 mRNA translation. Nature 2011, 473:105-108.
-
(2011)
Nature
, vol.473
, pp. 105-108
-
-
Burns, D.M.1
D'Ambrogio, A.2
Nottrott, S.3
Richter, J.D.4
-
9
-
-
78649255480
-
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness
-
Burroughs A.M., Ando Y., de Hoon M.J.L., Tomaru Y., Nishibu T., Ukekawa R., Funakoshi T., Kurokawa T., Suzuki H., Hayashizaki Y., Daub C.O. A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness. Genome Res. 2010, 20:1398-1410.
-
(2010)
Genome Res.
, vol.20
, pp. 1398-1410
-
-
Burroughs, A.M.1
Ando, Y.2
de Hoon, M.J.L.3
Tomaru, Y.4
Nishibu, T.5
Ukekawa, R.6
Funakoshi, T.7
Kurokawa, T.8
Suzuki, H.9
Hayashizaki, Y.10
Daub, C.O.11
-
10
-
-
34347406537
-
Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions
-
Corà D., Di Cunto F., Caselle M., Provero P. Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions. BMC Bioinformatics 2007, 8:174.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 174
-
-
Corà, D.1
Di Cunto, F.2
Caselle, M.3
Provero, P.4
-
11
-
-
36849048778
-
Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression
-
Diederichs S., Haber D.A. Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression. Cell 2007, 131:1097-1108.
-
(2007)
Cell
, vol.131
, pp. 1097-1108
-
-
Diederichs, S.1
Haber, D.A.2
-
12
-
-
79959913677
-
MicroRNA sequence and expression analysis in breast tumors by deep sequencing
-
Farazi T.A., Horlings H.M., Ten Hoeve J.J., Mihailovic A., Halfwerk H., Morozov P., Brown M., Hafner M., Reyal F., van Kouwenhove M., et al. MicroRNA sequence and expression analysis in breast tumors by deep sequencing. Cancer Res. 2011, 71:4443-4453.
-
(2011)
Cancer Res.
, vol.71
, pp. 4443-4453
-
-
Farazi, T.A.1
Horlings, H.M.2
Ten Hoeve, J.J.3
Mihailovic, A.4
Halfwerk, H.5
Morozov, P.6
Brown, M.7
Hafner, M.8
Reyal, F.9
van Kouwenhove, M.10
-
13
-
-
70349476898
-
Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline
-
Gu W., Shirayama M., Conte D., Vasale J., Batista P.J., Claycomb J.M., Moresco J.J., Youngman E.M., Keys J., Stoltz M.J., et al. Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline. Mol. Cell 2009, 36:231-244.
-
(2009)
Mol. Cell
, vol.36
, pp. 231-244
-
-
Gu, W.1
Shirayama, M.2
Conte, D.3
Vasale, J.4
Batista, P.J.5
Claycomb, J.M.6
Moresco, J.J.7
Youngman, E.M.8
Keys, J.9
Stoltz, M.J.10
-
14
-
-
34447115822
-
The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a
-
Guil S., Cáceres J.F. The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a. Nat. Struct. Mol. Biol. 2007, 14:591-596.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 591-596
-
-
Guil, S.1
Cáceres, J.F.2
-
15
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H., Ingolia N.T., Weissman J.S., Bartel D.P. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 2010, 466:835-840.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
16
-
-
81355125071
-
The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1
-
Han B.W., Hung J.-H., Weng Z., Zamore P.D., Ameres S.L. The 3'-to-5' exoribonuclease Nibbler shapes the 3' ends of microRNAs bound to Drosophila Argonaute1. Curr. Biol. 2011, 21:1878-1887.
-
(2011)
Curr. Biol.
, vol.21
, pp. 1878-1887
-
-
Han, B.W.1
Hung, J.-H.2
Weng, Z.3
Zamore, P.D.4
Ameres, S.L.5
-
17
-
-
84868153864
-
Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs
-
Heo I., Ha M., Lim J., Yoon M.-J., Park J.-E., Kwon S.C., Chang H., Kim V.N. Mono-uridylation of pre-microRNA as a key step in the biogenesis of group II let-7 microRNAs. Cell 2012, 151:521-532. 10.1016/j.cell.2012.09.022.
-
(2012)
Cell
, vol.151
, pp. 521-532
-
-
Heo, I.1
Ha, M.2
Lim, J.3
Yoon, M.-J.4
Park, J.-E.5
Kwon, S.C.6
Chang, H.7
Kim, V.N.8
-
18
-
-
34447291602
-
The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC
-
Horwich M.D., Li C., Matranga C., Vagin V., Farley G., Wang P., Zamore P.D. The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC. Curr. Biol. 2007, 17:1265-1272.
-
(2007)
Curr. Biol.
, vol.17
, pp. 1265-1272
-
-
Horwich, M.D.1
Li, C.2
Matranga, C.3
Vagin, V.4
Farley, G.5
Wang, P.6
Zamore, P.D.7
-
19
-
-
33749077732
-
In vitro precursor microRNA processing assays using Drosophila Schneider-2 cell lysates
-
Ishizuka A., Saito K., Siomi M.C., Siomi H. In vitro precursor microRNA processing assays using Drosophila Schneider-2 cell lysates. Methods Mol. Biol. 2006, 342:277-286.
-
(2006)
Methods Mol. Biol.
, vol.342
, pp. 277-286
-
-
Ishizuka, A.1
Saito, K.2
Siomi, M.C.3
Siomi, H.4
-
20
-
-
61449186404
-
Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
-
Katoh T., Sakaguchi Y., Miyauchi K., Suzuki T., Kashiwabara S.-I., Baba T., Suzuki T. Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev. 2009, 23:433-438.
-
(2009)
Genes Dev.
, vol.23
, pp. 433-438
-
-
Katoh, T.1
Sakaguchi, Y.2
Miyauchi, K.3
Suzuki, T.4
Kashiwabara, S.-I.5
Baba, T.6
Suzuki, T.7
-
21
-
-
84857772495
-
TDP-43 promotes microRNA biogenesis as a component of the Drosha and Dicer complexes
-
Kawahara Y., Mieda-Sato A. TDP-43 promotes microRNA biogenesis as a component of the Drosha and Dicer complexes. Proc. Natl. Acad. Sci. USA 2012, 109:3347-3352.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 3347-3352
-
-
Kawahara, Y.1
Mieda-Sato, A.2
-
22
-
-
33749662940
-
Opposing polymerase-deadenylase activities regulate cytoplasmic polyadenylation
-
Kim J.H., Richter J.D. Opposing polymerase-deadenylase activities regulate cytoplasmic polyadenylation. Mol. Cell 2006, 24:173-183.
-
(2006)
Mol. Cell
, vol.24
, pp. 173-183
-
-
Kim, J.H.1
Richter, J.D.2
-
23
-
-
77952479722
-
Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs
-
Krol J., Busskamp V., Markiewicz I., Stadler M.B., Ribi S., Richter J., Duebel J., Bicker S., Fehling H.J., Schübeler D., et al. Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs. Cell 2010, 141:618-631.
-
(2010)
Cell
, vol.141
, pp. 618-631
-
-
Krol, J.1
Busskamp, V.2
Markiewicz, I.3
Stadler, M.B.4
Ribi, S.5
Richter, J.6
Duebel, J.7
Bicker, S.8
Fehling, H.J.9
Schübeler, D.10
-
24
-
-
0025305576
-
Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies
-
Kwok S., Kellogg D.E., McKinney N., Spasic D., Goda L., Levenson C., Sninsky J.J. Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies. Nucleic Acids Res. 1990, 18:999.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 999
-
-
Kwok, S.1
Kellogg, D.E.2
McKinney, N.3
Spasic, D.4
Goda, L.5
Levenson, C.6
Sninsky, J.J.7
-
25
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
26
-
-
23944493378
-
Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis
-
Li J., Yang Z., Yu B., Liu J., Chen X. Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis. Curr. Biol. 2005, 15:1501-1507.
-
(2005)
Curr. Biol.
, vol.15
, pp. 1501-1507
-
-
Li, J.1
Yang, Z.2
Yu, B.3
Liu, J.4
Chen, X.5
-
27
-
-
81355129276
-
The exoribonuclease Nibbler controls 3' end processing of microRNAs in Drosophila
-
Liu N., Abe M., Sabin L.R., Hendriks G.-J., Naqvi A.S., Yu Z., Cherry S., Bonini N.M. The exoribonuclease Nibbler controls 3' end processing of microRNAs in Drosophila. Curr. Biol. 2011, 21:1888-1893.
-
(2011)
Curr. Biol.
, vol.21
, pp. 1888-1893
-
-
Liu, N.1
Abe, M.2
Sabin, L.R.3
Hendriks, G.-J.4
Naqvi, A.S.5
Yu, Z.6
Cherry, S.7
Bonini, N.M.8
-
29
-
-
34948901976
-
Structural determinants of RNA recognition and cleavage by Dicer
-
MacRae I.J., Zhou K., Doudna J.A. Structural determinants of RNA recognition and cleavage by Dicer. Nat. Struct. Mol. Biol. 2007, 14:934-940.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 934-940
-
-
MacRae, I.J.1
Zhou, K.2
Doudna, J.A.3
-
30
-
-
33845354027
-
Human let-7a miRNA blocks protein production on actively translating polyribosomes
-
Nottrott S., Simard M.J., Richter J.D. Human let-7a miRNA blocks protein production on actively translating polyribosomes. Nat. Struct. Mol. Biol. 2006, 13:1108-1114.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 1108-1114
-
-
Nottrott, S.1
Simard, M.J.2
Richter, J.D.3
-
31
-
-
84858446579
-
MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship
-
Pasquinelli A.E. MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship. Nat. Rev. Genet. 2012, 13:271-282.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 271-282
-
-
Pasquinelli, A.E.1
-
32
-
-
34548180483
-
Immunoprecipitation of mRNA-protein complexes
-
Peritz T., Zeng F., Kannanayakal T.J., Kilk K., Eiríksdóttir E., Langel U., Eberwine J. Immunoprecipitation of mRNA-protein complexes. Nat. Protoc. 2006, 1:577-580.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 577-580
-
-
Peritz, T.1
Zeng, F.2
Kannanayakal, T.J.3
Kilk, K.4
Eiríksdóttir, E.5
Langel, U.6
Eberwine, J.7
-
33
-
-
33847246805
-
Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
-
Rhodes D.R., Kalyana-Sundaram S., Mahavisno V., Varambally R., Yu J., Briggs B.B., Barrette T.R., Anstet M.J., Kincead-Beal C., Kulkarni P., et al. Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Neoplasia 2007, 9:166-180.
-
(2007)
Neoplasia
, vol.9
, pp. 166-180
-
-
Rhodes, D.R.1
Kalyana-Sundaram, S.2
Mahavisno, V.3
Varambally, R.4
Yu, J.5
Briggs, B.B.6
Barrette, T.R.7
Anstet, M.J.8
Kincead-Beal, C.9
Kulkarni, P.10
-
34
-
-
80053000096
-
MicroRNA destabilization enables dynamic regulation of the miR-16 family in response to cell-cycle changes
-
Rissland O.S., Hong S.-J., Bartel D.P. MicroRNA destabilization enables dynamic regulation of the miR-16 family in response to cell-cycle changes. Mol. Cell 2011, 43:993-1004.
-
(2011)
Mol. Cell
, vol.43
, pp. 993-1004
-
-
Rissland, O.S.1
Hong, S.-J.2
Bartel, D.P.3
-
35
-
-
33747334621
-
Extensive post-transcriptional regulation of microRNAs and its implications for cancer
-
Thomson J.M., Newman M., Parker J.S., Morin-Kensicki E.M., Wright T., Hammond S.M. Extensive post-transcriptional regulation of microRNAs and its implications for cancer. Genes Dev. 2006, 20:2202-2207.
-
(2006)
Genes Dev.
, vol.20
, pp. 2202-2207
-
-
Thomson, J.M.1
Newman, M.2
Parker, J.S.3
Morin-Kensicki, E.M.4
Wright, T.5
Hammond, S.M.6
-
36
-
-
67649277689
-
The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs
-
Trabucchi M., Briata P., Garcia-Mayoral M., Haase A.D., Filipowicz W., Ramos A., Gherzi R., Rosenfeld M.G. The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature 2009, 459:1010-1014.
-
(2009)
Nature
, vol.459
, pp. 1010-1014
-
-
Trabucchi, M.1
Briata, P.2
Garcia-Mayoral, M.3
Haase, A.D.4
Filipowicz, W.5
Ramos, A.6
Gherzi, R.7
Rosenfeld, M.G.8
-
37
-
-
84864311586
-
Bidirectional control of mRNA translation and synaptic plasticity by the cytoplasmic polyadenylation complex
-
Udagawa T., Swanger S.A., Takeuchi K., Kim J.H., Nalavadi V., Shin J., Lorenz L.J., Zukin R.S., Bassell G.J., Richter J.D. Bidirectional control of mRNA translation and synaptic plasticity by the cytoplasmic polyadenylation complex. Mol. Cell 2012, 47:253-266.
-
(2012)
Mol. Cell
, vol.47
, pp. 253-266
-
-
Udagawa, T.1
Swanger, S.A.2
Takeuchi, K.3
Kim, J.H.4
Nalavadi, V.5
Shin, J.6
Lorenz, L.J.7
Zukin, R.S.8
Bassell, G.J.9
Richter, J.D.10
-
38
-
-
84857399748
-
Breast cancer signatures for invasiveness and prognosis defined by deep sequencing of microRNA
-
Volinia S., Galasso M., Sana M.E., Wise T.F., Palatini J., Huebner K., Croce C.M. Breast cancer signatures for invasiveness and prognosis defined by deep sequencing of microRNA. Proc. Natl. Acad. Sci. USA 2012, 109:3024-3029.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 3024-3029
-
-
Volinia, S.1
Galasso, M.2
Sana, M.E.3
Wise, T.F.4
Palatini, J.5
Huebner, K.6
Croce, C.M.7
-
39
-
-
0037136552
-
A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans
-
Wang L., Eckmann C.R., Kadyk L.C., Wickens M., Kimble J. A regulatory cytoplasmic poly(A) polymerase in Caenorhabditis elegans. Nature 2002, 419:312-316.
-
(2002)
Nature
, vol.419
, pp. 312-316
-
-
Wang, L.1
Eckmann, C.R.2
Kadyk, L.C.3
Wickens, M.4
Kimble, J.5
-
40
-
-
80052527459
-
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
-
Wyman S.K., Knouf E.C., Parkin R.K., Fritz B.R., Lin D.W., Dennis L.M., Krouse M.A., Webster P.J., Tewari M. Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. Genome Res. 2011, 21:1450-1461.
-
(2011)
Genome Res.
, vol.21
, pp. 1450-1461
-
-
Wyman, S.K.1
Knouf, E.C.2
Parkin, R.K.3
Fritz, B.R.4
Lin, D.W.5
Dennis, L.M.6
Krouse, M.A.7
Webster, P.J.8
Tewari, M.9
|