-
1
-
-
70349212271
-
Parametric complexity of sequence assembly: Theory and applications to next generation sequencing
-
Nagarajan N, Pop M, (2009) Parametric complexity of sequence assembly: Theory and applications to next generation sequencing. Journal of Computational Biology 16: 897-908.
-
(2009)
Journal of Computational Biology
, vol.16
, pp. 897-908
-
-
Nagarajan, N.1
Pop, M.2
-
2
-
-
77952886150
-
Assembly algorithms for next-generation sequencing data
-
Miller J, Koren S, Sutton G (2010) Assembly algorithms for next-generation sequencing data. Genomics: 1-13.
-
(2010)
Genomics
, pp. 1-13
-
-
Miller, J.1
Koren, S.2
Sutton, G.3
-
3
-
-
84856557873
-
Feature-by-Feature Evaluating De Novo Sequence Assembly
-
Vezzi F, Narzisi G, Mishra B, (2012) Feature-by-Feature Evaluating De Novo Sequence Assembly. PLoS ONE 7: e31002.
-
(2012)
PLoS ONE
, vol.7
-
-
Vezzi, F.1
Narzisi, G.2
Mishra, B.3
-
4
-
-
78651426609
-
-
John Wiley & Sons, Ltd. doi:10.1002/0470867302.ch5
-
Semple CAM (2003) Assembling a View of the Human Genome, John Wiley & Sons, Ltd. 93-117. doi:10.1002/0470867302.ch5. URL http://dx.doi.org/10.1002/0470867302.ch5.
-
(2003)
Assembling a View of the Human Genome
, pp. 93-117
-
-
Semple, C.A.M.1
-
5
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
6
-
-
78650909427
-
Limitations of next-generation genome sequence assembly
-
Alkan C, Sajjadian S, Eichler E, (2010) Limitations of next-generation genome sequence assembly. Nature methods 8: 61-65.
-
(2010)
Nature Methods
, vol.8
, pp. 61-65
-
-
Alkan, C.1
Sajjadian, S.2
Eichler, E.3
-
7
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li H, Durbin R, (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589.
-
(2010)
Bioinformatics
, vol.26
, pp. 589
-
-
Li, H.1
Durbin, R.2
-
8
-
-
45549109750
-
Genome assembly forensics: finding the elusive misassembly
-
Phillippy AM, Schatz MC, Pop M, (2008) Genome assembly forensics: finding the elusive misassembly. Genome biology 9: R55.
-
(2008)
Genome Biology
, vol.9
-
-
Phillippy, A.M.1
Schatz, M.C.2
Pop, M.3
-
9
-
-
79955724657
-
Comparing De Novo Genome Assembly: The Long and Short of It
-
Narzisi G, Mishra B, (2011) Comparing De Novo Genome Assembly: The Long and Short of It. PLoS ONE 6: e19175.
-
(2011)
PLoS ONE
, vol.6
-
-
Narzisi, G.1
Mishra, B.2
-
10
-
-
83055181941
-
Assemblathon 1: A competitive assessment of de novo short read assembly methods
-
Earl DA, Bradnam K, St John J, Darling A, Lin D, et al. (2011) Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome Research.
-
(2011)
Genome Research
-
-
Earl, D.A.1
Bradnam, K.2
St John, J.3
Darling, A.4
Lin, D.5
-
11
-
-
84857893016
-
GAGE: A critical evaluation of genome assemblies and assembly algorithms
-
Salzberg SL, Phillippy AM, Zimin AV, Puiu D, Magoc T, et al. (2011) GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research.
-
(2011)
Genome Research
-
-
Salzberg, S.L.1
Phillippy, A.M.2
Zimin, A.V.3
Puiu, D.4
Magoc, T.5
-
12
-
-
78651428162
-
Scoring-and-Unfolding Trimmed Tree Assembler: Concepts, Constructs and Comparisons
-
Narzisi G, Mishra B, (2010) Scoring-and-Unfolding Trimmed Tree Assembler: Concepts, Constructs and Comparisons. Bioinformatics (Oxford, England) 27: 153-160.
-
(2010)
Bioinformatics (Oxford, England)
, vol.27
, pp. 153-160
-
-
Narzisi, G.1
Mishra, B.2
-
13
-
-
37549051726
-
Assembly reconciliation
-
Zimin AV, Smith DR, Sutton G, Yorke JA, (2008) Assembly reconciliation. Bioinformatics (Oxford, England) 24: 42-5.
-
(2008)
Bioinformatics (Oxford, England)
, vol.24
, pp. 42-45
-
-
Zimin, A.V.1
Smith, D.R.2
Sutton, G.3
Yorke, J.A.4
-
14
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (Oxford, England) 25: 1754-60.
-
(2009)
Bioinformatics (Oxford, England)
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
15
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino D, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome research 18: 821-829.
-
(2008)
Genome Research
, vol.18
, pp. 821-829
-
-
Zerbino, D.1
Birney, E.2
-
16
-
-
84871685373
-
Efficient de novo assembly of bacterial genomes using low coverage short read sequencing
-
Reinhardt J, Baltrus D, Nishimura M, Jeck W, Jones C, et al. (2008) Efficient de novo assembly of bacterial genomes using low coverage short read sequencing. Genome.
-
(2008)
Genome
-
-
Reinhardt, J.1
Baltrus, D.2
Nishimura, M.3
Jeck, W.4
Jones, C.5
-
17
-
-
0025897602
-
Chromosome-specific recombinant dna libraries from the fungus aspergillus nidulans
-
Brody H, Griffith J, Cuticchia AJ, Arnold J, Timberlake WE, (1991) Chromosome-specific recombinant dna libraries from the fungus aspergillus nidulans. Nucleic Acids Res 19: 3105-3109.
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 3105-3109
-
-
Brody, H.1
Griffith, J.2
Cuticchia, A.J.3
Arnold, J.4
Timberlake, W.E.5
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