Assembly reconciliation

Bioinformatics

Volumn 24, Issue 1, 2008, Pages 42-45

  Zimin, Aleksey V ^a   Smith, Douglas R ^b   Sutton, Granger ^c   Yorke, James A ^a  

^a UNIVERSITY OF MARYLAND   (United States)

^b Agencourt Bioscience Corporation   (United States)

^c J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DROSOPHILA PROTEIN;

ARTICLE; COMPUTER PROGRAM; GENE SEQUENCE; GENETIC ALGORITHM; GENETIC DATABASE; GENETIC PROCEDURES; GENOME ANALYSIS; INFORMATION PROCESSING; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

MACACA MULATTA;

EID: 37549051726     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm542     Document Type: Article

References (11)

1. Batzoglou,S. et al. (2002) ARACHNE: A whole-genome shotgun assembler. Genome Res., 12, 177-189.
2. Delcher,A.L. et al. (1999) Alignment of whole genomes. Nucleic Acids Res., 27, 2369-2376.
3. Delcher,A.L. et al. (2002) Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res., 30, 2478-2483.
4. Dew,I.M. et al. (2005) A tool for analyzing mate pairs in assemblies (TAMPA). J. Comput. Biol., 12, 497-513.
5. Jaffe,D.B. et al. (2003) Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res., 13, 91-96.
6. Huang,X. et al. (2003) PCAP: A whole-genome assembly program. Genome Res., 13, 2164-2170.
7. Kurtz,S. et al. (2003) Versatile and open software for comparing large genomes. Genome Biol., 5, R12.
8. Mullikin,J.C. and Ning,Z. (2002) The phusion assembler. Genome Res. 13, 81-90.
9. Myers,E.W. et al. (2000) A whole-genome assembly of Drosophila. Science, 287, 2196-2204.
10. Roberts,M. et al. (2004) A preprocessor for shotgun assembly of large genomes. J. Comput. Biol., 11, 734-752.
11. Sanger,F. et al. (1982) Nucleotide sequence of bacteriophage lambda DNA. J. Mol. Biol., 162, 729-773.