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Volumn 858, Issue , 2012, Pages 311-338

DNA extraction, preservation, and amplification

Author keywords

Agarose gel electrophoresis; DNA barcoding; DNA extraction; DNA preservation; PCR amplification; PCR cleanup

Indexed keywords

DNA; SILICA GEL;

EID: 84871673751     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-591-6_14     Document Type: Article
Times cited : (41)

References (44)
  • 1
    • 2442560471 scopus 로고    scopus 로고
    • Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens
    • Rohland N, Siedel H, Hofreiter M (2004) Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. Biotechniques 36:814-821
    • (2004) Biotechniques , vol.36 , pp. 814-821
    • Rohland, N.1    Siedel, H.2    Hofreiter, M.3
  • 2
    • 33745955199 scopus 로고    scopus 로고
    • Museum fi sh specimens and molecular taxonomy:A comparative study on DNA extraction protocols and preservation techniques
    • Chakraborty A, Sakai M, Iwatsuki Y (2006) Museum fi sh specimens and molecular taxonomy: a comparative study on DNA extraction protocols and preservation techniques. J Appl Ichthyol 22:160-166
    • (2006) J Appl Ichthyol , vol.22 , pp. 160-166
    • Chakraborty, A.1    Sakai, M.2    Iwatsuki, Y.3
  • 3
    • 38849101473 scopus 로고    scopus 로고
    • DNA extraction from dry museum beetles without conferring external morphological damage
    • Gilbert TMP, Moore W, Melchior L, Worobey M (2007) DNA extraction from dry museum beetles without conferring external morphological damage. PLoS ONE 2:e272
    • (2007) PLoS ONE , vol.2
    • Gilbert, T.M.P.1    Moore, W.2    Melchior, L.3    Worobey, M.4
  • 4
    • 0030426172 scopus 로고    scopus 로고
    • DNA sequencing of formalin-fi xed crustaceans from archival research collections
    • France SC, Kocher TD (1996) DNA sequencing of formalin-fi xed crustaceans from archival research collections. Mol Mar Biol Biotech 5:304-313
    • (1996) Mol Mar Biol Biotech , vol.5 , pp. 304-313
    • France, S.C.1    Kocher, T.D.2
  • 5
    • 0031915580 scopus 로고    scopus 로고
    • Extraction and amplifi cation of mitochondrial DNA from formalin-fi xed deep-sea molluscs
    • Chase MR, Etter RJ, Rex MA, Quattro JM (1998) Extraction and amplifi cation of mitochondrial DNA from formalin-fi xed deep-sea molluscs. Biotechniques 24:243-247
    • (1998) Biotechniques , vol.24 , pp. 243-247
    • Chase, M.R.1    Etter, R.J.2    Rex, M.A.3    Quattro, J.M.4
  • 6
    • 0033945273 scopus 로고    scopus 로고
    • The extraction of DNA from formalin-fi xed, ethanol-preserved reptile and amphibian tissues
    • Chatigny ME (2000) The extraction of DNA from formalin-fi xed, ethanol-preserved reptile and amphibian tissues. Herpetol Rev 31:86-87
    • (2000) Herpetol Rev , vol.31 , pp. 86-87
    • Chatigny, M.E.1
  • 7
    • 0141676438 scopus 로고    scopus 로고
    • DNA, PCR and formalinized animal tissue-A short review and protocols
    • Schander C, Halanych KM (2003) DNA, PCR and formalinized animal tissue-A short review and protocols. Org Divers Evol 3: 195-205
    • (2003) Org Divers Evol , vol.3 , pp. 195-205
    • Schander, C.1    Halanych, K.M.2
  • 8
    • 23444462084 scopus 로고    scopus 로고
    • An alternative protocol for DNA extraction from formalin fi xed and paraffi n wax embedded tissue
    • Coura R, Prolla JC, Meurer L, Ashton-Prolla P (2008) An alternative protocol for DNA extraction from formalin fi xed and paraffi n wax embedded tissue. J Clin Pathol 58: 894-895
    • (2008) J Clin Pathol , vol.58 , pp. 894-895
    • Coura, R.1    Prolla, J.C.2    Meurer, L.3    Ashton-Prolla, P.4
  • 9
    • 84880568499 scopus 로고    scopus 로고
    • Comparison of methods and protocols for routine DNA extraction in the DNA Bank Network
    • In:Gradstein R, Klatt S, Normann F, Weigelt P, Willmann R, Wilson R (eds). Universitätsverlag Göttingen, Göttingen
    • Zetzsche H, Klenk H-P, Raupach MJ, Knebelsberger T, Gemeinholzer B (2008) Comparison of methods and protocols for routine DNA extraction in the DNA Bank Network. In: Gradstein R, Klatt S, Normann F, Weigelt P, Willmann R, Wilson R (eds) Systematics. Universitätsverlag Göttingen, Göttingen, p 354
    • (2008) Systematics , pp. 354
    • Zetzsche, H.1    Klenk, H.-P.2    Raupach, M.J.3    Knebelsberger, T.4    Gemeinholzer, B.5
  • 11
    • 0038714030 scopus 로고    scopus 로고
    • A quick, simple, and inexpensive mollusc DNA extraction protocol for PCR-based techniques
    • Van Moorsel CHM, Van Nes WJ, Megens HJ (2000) A quick, simple, and inexpensive mollusc DNA extraction protocol for PCR-based techniques. Malacologia 42:203-206
    • (2000) Malacologia , vol.42 , pp. 203-206
    • Van Moorsel, C.H.M.1    Van Nes, W.J.2    Megens, H.J.3
  • 14
    • 0037586974 scopus 로고    scopus 로고
    • An improved non-cryogenic transport and storage preservative facilitating DNA extraction from 'diffi cult' plants collected at remotes site
    • Thomson JA (2002) An improved non-cryogenic transport and storage preservative facilitating DNA extraction from 'diffi cult' plants collected at remotes site. Telopea 9:755-760
    • (2002) Telopea , vol.9 , pp. 755-760
    • Thomson, J.A.1
  • 15
    • 73049103662 scopus 로고    scopus 로고
    • A comparison of different DNA extraction methods for slugs (Mollusca:Pulmonata)
    • Skujiene G, Soroka M (2003) A comparison of different DNA extraction methods for slugs (Mollusca: Pulmonata). Ekologija 1:12-16
    • (2003) Ekologija , vol.1 , pp. 12-16
    • Skujiene, G.1    Soroka, M.2
  • 16
    • 33846404082 scopus 로고    scopus 로고
    • Exploitation of archived marine nematodes-A hot lysis DNA extraction protocol for molecular studies
    • Bhadury P, Austen MC, Bilton BT et al (2006) Exploitation of archived marine nematodes-A hot lysis DNA extraction protocol for molecular studies. Zool Scr 36:93-98
    • (2006) Zool Scr , vol.36 , pp. 93-98
    • Bhadury, P.1    Austen, M.C.2    Bilton, B.T.3
  • 17
    • 34547702670 scopus 로고    scopus 로고
    • Comparison of different protocols for DNA preparation and PCR amplifi-Cation of mitochondrial genes of tardigrades
    • Schill RO (2007) Comparison of different protocols for DNA preparation and PCR amplifi-cation of mitochondrial genes of tardigrades. J Limnol 66:164-170
    • (2007) J Limnol , vol.66 , pp. 164-170
    • Schill, R.O.1
  • 18
    • 44049084564 scopus 로고    scopus 로고
    • Assessing meiofaunal variation among individuals utilising morphological and molecular approaches:an example using Tardigrada
    • Sands CJ, Convey P, Linse K, McInnes SJ (2008) Assessing meiofaunal variation among individuals utilising morphological and molecular approaches: an example using Tardigrada. BMC Ecol 8:7
    • (2008) BMC Ecol , vol.8 , pp. 7
    • Sands, C.J.1    Convey, P.2    Linse, K.3    McInnes, S.J.4
  • 20
    • 77958517980 scopus 로고    scopus 로고
    • Coupling non-destructive DNA extraction and voucher retrieval for small soft-bodied Arthropods in a high-throughput context:The example of Collembola
    • Porco D, Rougerie R, Deharveng L, Hebert P (2010) Coupling non-destructive DNA extraction and voucher retrieval for small soft-bodied Arthropods in a high-throughput context: the example of Collembola. Mol Ecol Res 10: 942-945
    • (2010) Mol Ecol Res , vol.10 , pp. 942-945
    • Porco, D.1    Rougerie, R.2    Deharveng, L.3    Hebert, P.4
  • 21
    • 0037673574 scopus 로고    scopus 로고
    • A method for extraction and analysis of high quality genomic DNA from ixodid ticks
    • Hill CA, Gutierrez JA (2003) A method for extraction and analysis of high quality genomic DNA from ixodid ticks. Med Vet Entomol 17:224-227
    • (2003) Med Vet Entomol , vol.17 , pp. 224-227
    • Hill, C.A.1    Gutierrez, J.A.2
  • 22
    • 9744260950 scopus 로고    scopus 로고
    • Determination of an effi cient and reliable method for DNA extraction from ticks
    • Halos L, Jamal T, Vial L et al (2004) Determination of an effi cient and reliable method for DNA extraction from ticks. Vet Res 35:709-713
    • (2004) Vet Res , vol.35 , pp. 709-713
    • Halos, L.1    Jamal, T.2    Vial, L.3
  • 23
    • 33645508887 scopus 로고    scopus 로고
    • Comparison of preservation methods of Rhipicephalus appendiculatus (Acari:Ixodidae) for reliable DNA amplifi cation by PCR
    • Mtambo J, van Bortel W, Madder M et al (2006) Comparison of preservation methods of Rhipicephalus appendiculatus (Acari: Ixodidae) for reliable DNA amplifi cation by PCR. Exp Appl Acar 38:189-199
    • (2006) Exp Appl Acar , vol.38 , pp. 189-199
    • Mtambo, J.1    Van Bortel, W.2    Madder, M.3
  • 24
    • 0030561325 scopus 로고    scopus 로고
    • A method for the large scale transformation effi ciency fungal genomic DNA
    • Zhang D, Yang Y, Castlebury LA, Cerniglia CE (1996) A method for the large scale transformation effi ciency fungal genomic DNA. FEMS Microbiol Lett 145:261-265
    • (1996) FEMS Microbiol Lett , vol.145 , pp. 261-265
    • Zhang, D.1    Yang, Y.2    Castlebury, L.A.3    Cerniglia, C.E.4
  • 25
    • 26944433790 scopus 로고    scopus 로고
    • Comparsion of six DNA extraction methods for recovery of fungal DNA assessed by quantitative PCR
    • Fredricks DN, Smith C, Meier A (2005) Comparsion of six DNA extraction methods for recovery of fungal DNA assessed by quantitative PCR. J Clin Microbiol 43:5122-5128
    • (2005) J Clin Microbiol , vol.43 , pp. 5122-5128
    • Fredricks, D.N.1    Smith, C.2    Meier, A.3
  • 26
    • 2642626628 scopus 로고    scopus 로고
    • Rapid extraction of genomic DNA from medically important yeasts and fi lamentous fungi by high-speed cell disruption
    • Muller FM, Werner KE, Kasai M et al (1998) Rapid extraction of genomic DNA from medically important yeasts and fi lamentous fungi by high-speed cell disruption. J Clin Micobiol 36:1625-1629
    • (1998) J Clin Micobiol , vol.36 , pp. 1625-1629
    • Muller, F.M.1    Werner, K.E.2    Kasai, M.3
  • 27
    • 0032382107 scopus 로고    scopus 로고
    • Comparative analysis of different DNA extraction protocols:A fast, universal maxipreparation of high quality plant DNA for genetic evaluation and phylogenetic studies
    • Csaikl UM, Bastian H, Brettschneider R et al (1998) Comparative analysis of different DNA extraction protocols: a fast, universal maxipreparation of high quality plant DNA for genetic evaluation and phylogenetic studies. Plant Mol Biol Report 16:69-86
    • (1998) Plant Mol Biol Report , vol.16 , pp. 69-86
    • Csaikl, U.M.1    Bastian, H.2    Brettschneider, R.3
  • 28
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 29
    • 0036056608 scopus 로고    scopus 로고
    • Comparison of seven DNA extraction and amplifi cation protocols in historical herbarium specimen of Juncaceae
    • Drabkowa L, Kirschner J, Vlcek C (2002) Comparison of seven DNA extraction and amplifi cation protocols in historical herbarium specimen of Juncaceae. Plant Mol Biol Report 20:161-175
    • (2002) Plant Mol Biol Report , vol.20 , pp. 161-175
    • Drabkowa, L.1    Kirschner, J.2    Vlcek, C.3
  • 30
  • 31
    • 4143125675 scopus 로고    scopus 로고
    • Rapid isolation of DNA from chocolate and date palm tree crops
    • Haymes KM, Ibrahim IA, Mischke S et al (2004) Rapid isolation of DNA from chocolate and date palm tree crops. J Agric Food Chem 52:5456-5462
    • (2004) J Agric Food Chem , vol.52 , pp. 5456-5462
    • Haymes, K.M.1    Ibrahim, I.A.2    Mischke, S.3
  • 32
    • 34248334281 scopus 로고    scopus 로고
    • Comparative analysis of different DNA extraction protocols in fresh and herbarium specimens of the genus Dalbergia
    • Ribeiro RA, Lovato MB (2007) Comparative analysis of different DNA extraction protocols in fresh and herbarium specimens of the genus Dalbergia Gen Mol Res 6:173-187
    • (2007) Gen Mol Res , vol.6 , pp. 173-187
    • Ribeiro, R.A.1    Lovato, M.B.2
  • 33
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl T (1993) Instability and decay of the primary structure of DNA. Nature 362:709-715
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 35
    • 24644513790 scopus 로고    scopus 로고
    • Optimal storage conditions for highly dilute DNA samples:A role for trehalose as a preserving agent
    • Smith S, Morin PA (2005) Optimal storage conditions for highly dilute DNA samples: a role for trehalose as a preserving agent. J Forensic Sci 50:1101-1108
    • (2005) J Forensic Sci , vol.50 , pp. 1101-1108
    • Smith, S.1    Morin, P.A.2
  • 36
    • 34147179041 scopus 로고    scopus 로고
    • Use of quantitative realtime PCR to estimate maize endogenous DNA degradation after cooking or extrusion and in food products
    • Murray S, Butler RC, Hardacre A, Timmerman-Vaughan G (2007) Use of quantitative realtime PCR to estimate maize endogenous DNA degradation after cooking or extrusion and in food products. J Agric Chem 55:2231-2239
    • (2007) J Agric Chem , vol.55 , pp. 2231-2239
    • Murray, S.1    Butler, R.C.2    Hardacre, A.3    Timmerman-Vaughan, G.4
  • 38
    • 55349105499 scopus 로고    scopus 로고
    • DNA damage in preserved specimens and tissue samples:A molecular assessment
    • Zimmermann J, Hajibabaei M, Blackburn DC et al (2008) DNA damage in preserved specimens and tissue samples: a molecular assessment. Front Zool 5:1-18
    • (2008) Front Zool , vol.5 , pp. 1-18
    • Zimmermann, J.1    Hajibabaei, M.2    Blackburn, D.C.3
  • 39
    • 0028528103 scopus 로고
    • DNA primers for amplifi-Cation of mitochondrial cytochrome c oxidase subunit i from diverse metazoan invertebrates
    • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplifi-cation of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotech 3:294-299
    • (1994) Mol Mar Biol Biotech , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 41
    • 69149084832 scopus 로고    scopus 로고
    • A DNA barcode for land plants
    • Plant Working Group C.
    • CBOL Plant Working Group (2009) A DNA barcode for land plants. Proc Natl Acad Sci USA 106:12794-12797
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 12794-12797
  • 42
    • 65349088516 scopus 로고    scopus 로고
    • Progress towards DNA barcoding of fungi
    • Seifert KA (2009) Progress towards DNA barcoding of fungi. Mol Ecol Res 9: 83-89
    • (2009) Mol Ecol Res , vol.9 , pp. 83-89
    • Seifert, K.A.1
  • 43
    • 33749623164 scopus 로고    scopus 로고
    • DESS:A versatile solution for preserving morphology and extractable DNA of nematodes
    • Yoder M, De Ley IT, Wm King I et al (2006) DESS: a versatile solution for preserving morphology and extractable DNA of nematodes. Nematology 8:367-376
    • (2006) Nematology , vol.8 , pp. 367-376
    • Yoder, M.1    De Ley, I.T.2    Wm King, I.3
  • 44
    • 13844310114 scopus 로고    scopus 로고
    • A procedure for combined genitalia extraction and DNA extraction in Lepidoptera
    • Knölke S, Erlacher S, Hausmann A et al (2005) A procedure for combined genitalia extraction and DNA extraction in Lepidoptera. Insect Syst Evol 35:401-409
    • (2005) Insect Syst Evol , vol.35 , pp. 401-409
    • Knölke, S.1    Erlacher, S.2    Hausmann, A.3


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