Influence of cloning by chromatin transfer on placental gene expression at Day 45 of pregnancy in cattle

Animal Reproduction Science

Volumn 136, Issue 4, 2013, Pages 231-244

  Mesquita, Fernando S ^a,e   Machado, Sergio A ^a   Drnevich, Jenny ^a   Borowicz, Pawel ^b   Wang, Zhongde ^c,d   Nowak, Romana A ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b NORTH DAKOTA STATE UNIVERSITY   (United States)

^c UTAH STATE UNIVERSITY   (United States)

^d BioDak   (United States)

^e UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

CKDN1C; DPP4; Imprinted; Invasiveness; IVF; Microarray

Indexed keywords

ANIMAL; ANIMAL DISEASE; ARTICLE; CATTLE; CHROMATIN; CLONING; DNA MICROARRAY; EMBRYO TRANSFER; FEMALE; FERTILIZATION IN VITRO; GENE EXPRESSION; HUMAN; METABOLISM; METHODOLOGY; PHYSIOLOGY; PLACENTA; PREGNANCY; REAL TIME POLYMERASE CHAIN REACTION; TRANSPLANTATION;

ANIMALS; CATTLE; CHROMATIN; CLONING, ORGANISM; EMBRYO TRANSFER; FEMALE; FERTILIZATION IN VITRO; GENE EXPRESSION; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLACENTA; PREGNANCY; REAL-TIME POLYMERASE CHAIN REACTION;

ANIMALIA; BOS;

EID: 84871664975     PISSN: 03784320     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.anireprosci.2012.10.030     Document Type: Article

References (63)

1. ® Expression Analysis Data Analysis Fundamentals Manual 2002, Available at: http://media.affymetrix.com/support/downloads/manuals/data_analysis_fundamentals_manual.pdf.
2. Ager E.I., Pask A.J., Gehring H.M., Shaw G., Renfree M.B. Evolution of the CDKN1C-KCNQ1 imprinted domain. BMC Evol. Biol. 2008, 8:163.
3. Alper S.L. Molecular physiology of SLC4 anion exchangers. Exp. Physiol. 2006, 91:153-161.
4. Apte S.S. A disintegrin-like and metalloprotease (reprolysin-type) with thrombospondin type 1 motif (ADAMTS) superfamily: functions and mechanisms. J. Biol. Chem. 2009, 284:31493-31497.
5. Arnold D.R., Bordignon V., Lefebvre R., Murphy B.D., Smith L.C. Somatic cell nuclear transfer alters peri-implantation trophoblast differentiation in bovine embryos. Reproduction 2006, 132:279-290.
6. Benjamini Y., Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. Ser. B (Methodol.) 1995, 57:289-300.
7. Bertolini M., Anderson G.B. The placenta as a contributor to production of large calves. Theriogenology 2002, 57:181-187.
8. Binelli M., Kohan-Ghadr H.R., Arnold D.R., Lefebvre R., Smith L.C., Murphy B.D. Interferon-stimulated genes are up-regulated in somatic cell nuclear transfer-derived bovine placentae at day 40 of pregnancy. Biol. Reprod. 2009, 81(1 (Supplement)):178.
9. Bridger P.S., Haupt S., Leiser R., Johnson G.A., Burghardt R.C., Tinneberg H.R., Pfarrer C. Integrin activation in bovine placentomes and in caruncular epithelial cells isolated from pregnant cows. Biol. Reprod. 2008, 79:274-282.
10. Chavatte-Palmer P., Heyman Y., Richard C., Monget P., LeBourhis D., Kann G., Chilliard Y., Vignon X., Renard J.P. Clinical, hormonal, and hematologic characteristics of bovine calves derived from nuclei from somatic cells. Biol. Reprod. 2002, 66:1596-1603.
11. Chen C.P. Syndromes and disorders associated with omphalocele (I): Beckwith-Wiedemann syndrome. Taiwan. J. Obstet. Gynecol. 2007, 46:96-102.
12. Constant F., Guillomot M., Heyman Y., Vignon X., Laigre P., Servely J.L., Renard J.P., Chavatte-Palmer P. Large offspring or large placenta syndrome? Morphometric analysis of late gestation bovine placentomes from somatic nuclear transfer pregnancies complicated by hydrallantois. Biol. Reprod. 2006, 75:122-130.
13. Cullen P.J. Endosomal sorting and signalling: an emerging role for sorting nexins. Nat. Rev. Mol. Cell Biol. 2008, 9:574-582.
14. Dean W., Santos F., Stojkovic M., Zakhartchenko V., Walter J., Wolf E., Reik W. Conservation of methylation reprogramming in mammalian development: aberrant reprogramming in cloned embryos. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:13734-13738.
15. Edwards J.L., Schrick F.N., McCracken M.D., van Amstel S.R., Hopkins F.M., Welborn M.G., Davies C.J. Cloning adult farm animals: a review of the possibilities and problems associated with somatic cell nuclear transfer. Am. J. Reprod. Immunol. 2003, 50:113-123.
16. Everts R.E., Band M.R., Liu Z.L., Kumar C.G., Liu L., Loor J.J., Oliveira R., Lewin H.A. A 7872 cDNA microarray and its use in bovine functional genomics. Vet. Immunol. Immunopathol. 2005, 105:235-245.
17. Fujiwara H., Higuchi T., Sato Y., Nishioka Y., Zeng B.X., Yoshioka S., Tatsumi K., Ueda M., Maeda M. Regulation of human extravillous trophoblast function by membrane-bound peptidases. Biochim. Biophys. Acta 2005, 1751:26-32.
18. Gaide Chevronnay H.P., Selvais C., Emonard H., Galant C., Marbaix E., Henriet P. Regulation of matrix metalloproteinases activity studied in human endometrium as a paradigm of cyclic tissue breakdown and regeneration. Biochim. Biophys. Acta 2012, 1824:146-156.
19. Gao H., Wu G., Spencer T.E., Johnson G.A., Bazer F.W. Select nutrients in the ovine uterine lumen. IV. Expression of neutral and acidic amino acid transporters in ovine uteri and peri-implantation conceptuses. Biol. Reprod. 2009, 80:1196-1208.
20. Gentleman R.C., Carey V.J., Bates D.M., Bolstad B., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., Gentry J., Hornik K., Hothorn T., Huber W., Iacus S., Irizarry R., Leisch F., Li C., Maechler M., Rossini A.J., Sawitzki G., Smith C., Smyth G., Tierney L., Yang J.Y., Zhang J. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004, 5:R80.
21. Guillomot M., Taghouti G., Constant F., Degrelle S., Hue I., Chavatte-Palmer P., Jammes H. Abnormal expression of the imprinted gene Phlda2 in cloned bovine placenta. Placenta 2010, 31:482-490.
22. Hashizume K. Analysis of uteroplacental-specific molecules and their functions during implantation and placentation in the bovine. J. Reprod. Dev. 2007, 53:1-11.
23. Heyman Y. Nuclear transfer: a new tool for reproductive biotechnology in cattle. Reprod. Nutr. Dev. 2005, 45:353-361.
24. Heyman Y., Chavatte-Palmer P., Berthelot V., Fromentin G., Hocquette J.F., Martignat L., Renard J.P. Assessing the quality of products from cloned cattle: an integrative approach. Theriogenology 2007, 67:134-141.
25. Hill J.R., Burghardt R.C., Jones K., Long C.R., Looney C.R., Shin T., Spencer T.E., Thompson J.A., Winger Q.A., Westhusin M.E. Evidence for placental abnormality as the major cause of mortality in first-trimester somatic cell cloned bovine fetuses. Biol. Reprod. 2000, 63:1787-1794.
26. Hoffert-Goeres K.A., Batchelder C.A., Bertolini M., Moyer A.L., Famula T.R., Anderson G.B. Angiogenesis in day-30 bovine pregnancies derived from nuclear transfer. Cloning Stem Cells 2007, 9:595-607.
27. Kues W.A., Niemann H. The contribution of farm animals to human health. Trends Biotechnol. 2004, 22:286-294.
28. Lazzari G., Wrenzycki C., Herrmann D., Duchi R., Kruip T., Niemann H., Galli C. Cellular and molecular deviations in bovine in vitro-produced embryos are related to the large offspring syndrome. Biol. Reprod. 2002, 67:767-775.
29. Lee R.S., Peterson A.J., Donnison M.J., Ravelich S., Ledgard A.M., Li N., Oliver J.E., Miller A.L., Tucker F.C., Breier B., Wells D.N. Cloned cattle fetuses with the same nuclear genetics are more variable than contemporary half-siblings resulting from artificial insemination and exhibit fetal and placental growth deregulation even in the first trimester. Biol. Reprod. 2004, 70:1-11.
30. MacLean J.A., 2nd, Chakrabarty A., Xie S., Bixby J.A., Roberts R.M., Green J.A. Family of Kunitz proteins from trophoblast: expression of the trophoblast Kunitz domain proteins (TKDP) in cattle and sheep. Mol. Reprod. Dev. 2003, 65:30-40.
31. MacLean J.A., Roberts R.M., Green J.A. Atypical Kunitz-type serine proteinase inhibitors produced by the ruminant placenta. Biol. Reprod. 2004, 71:455-463.
32. Mansouri-Attia N., Sandra O., Aubert J., Degrelle S., Everts R.E., Giraud-Delville C., Heyman Y., Galio L., Hue I., Yang X., Tian X.C., Lewin H.A., Renard J.P. Endometrium as an early sensor of in vitro embryo manipulation technologies. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:5687-5692.
33. McCarty K.S., Szabo E., Flowers J.L., Cox E.B., Leight G.S., Miller L., Konrath J., Soper J.T., Budwit D.A., Creasman W.T., Seigier H.F., McCarty K.S. Use of a monoclonal anti-estrogen receptor antibody in the immunohistochemical evaluation of human tumors. Cancer Research (Suppl.) 1986, 46:4244s-4248s.
34. McLean C.A., Wang Z., Babu K., Edwards A., Kasinathan P., Robl J., Sheppard A.M. Normal development following chromatin transfer correlates with donor cell initial epigenetic state. Anim. Reprod. Sci. 2010, 118:388-393.
35. McMinn J., Wei M., Schupf N., Cusmai J., Johnson E.B., Smith A.C., Weksberg R., Thaker H.M., Tycko B. Unbalanced placental expression of imprinted genes in human intrauterine growth restriction. Placenta 2006, 27:540-549.
36. Miglino M.A., Pereira F.T., Visintin J.A., Garcia J.M., Meirelles F.V., Rumpf R., Ambrosio C.E., Papa P.C., Santos T.C., Carvalho A.F., Leiser R., Carter A.M. Placentation in cloned cattle: structure and microvascular architecture. Theriogenology 2007, 68:604-617.
37. Morimoto C., Schlossman S.F. The structure and function of CD26 in the T-cell immune response. Immunol. Rev. 1998, 161:55-70.
38. Niemann H., Tian X.C., King W.A., Lee R.S. Epigenetic reprogramming in embryonic and foetal development upon somatic cell nuclear transfer cloning. Reproduction 2008, 135:151-163.
39. Ogawa H., Ono Y., Shimozawa N., Sotomaru Y., Katsuzawa Y., Hiura H., Ito M., Kono T. Disruption of imprinting in cloned mouse fetuses from embryonic stem cells. Reproduction 2003, 126:549-557.
40. Oishi M., Gohma H., Hashizume K., Taniguchi Y., Yasue H., Takahashi S., Yamada T., Sasaki Y. Early embryonic death-associated changes in genome-wide gene expression profiles in the fetal placenta of the cow carrying somatic nuclear-derived cloned embryo. Mol. Reprod. Dev. 2006, 73:404-409.
41. Panarace M., Aguero J.I., Garrote M., Jauregui G., Segovia A., Cane L., Gutierrez J., Marfil M., Rigali F., Pugliese M., Young S., Lagioia J., Garnil C., Forte Pontes J.E., Ereno Junio J.C., Mower S., Medina M. How healthy are clones and their progeny: 5 years of field experience. Theriogenology 2007, 67:142-151.
42. Paolini C.L., Marconi A.M., Ronzoni S., Di Noio M., Fennessey P.V., Pardi G., Battaglia F.C. Placental transport of leucine, phenylalanine, glycine, and proline in intrauterine growth-restricted pregnancies. J. Clin. Endocrinol. Metab. 2001, 86:5427-5432.
43. Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29:e45.
44. Pfarrer C., Hirsch P., Guillomot M., Leiser R. Interaction of integrin receptors with extracellular matrix is involved in trophoblast giant cell migration in bovine placentomes. Placenta 2003, 24:588-597.
45. Qin B., He M., Chen X., Pei D. Sorting nexin 10 induces giant vacuoles in mammalian cells. J. Biol. Chem. 2006, 281:36891-36896.
46. Robl J.M. Application of cloning technology for production of human polyclonal antibodies in cattle. Cloning Stem Cells 2007, 9:12-16.
47. Rodriguez-Osorio N., Wang Z., Kasinathan P., Page G.P., Robl J.M., Memili E. Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos. BMC Genomics 2009, 10:190.
48. Sato Y., Fujiwara H., Higuchi T., Yoshioka S., Tatsumi K., Maeda M., Fujii S. Involvement of dipeptidyl peptidase IV in extravillous trophoblast invasion and differentiation. J. Clin. Endocrinol. Metab. 2002, 87:4287-4296.
49. Smith S.L., Everts R.E., Tian X.C., Du F., Sung L.Y., Rodriguez-Zas S.L., Jeong B.S., Renard J.P., Lewin H.A., Yang X. Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:17582-17587.
50. Smyth G.K. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 2004, 3:1-25. (Article 3).
51. Smyth G.K. Limma: Linear Models for Microarray Data, Bioinformatics and Computational Biology Solutions Using R and Bioconductor 2005, Springer, New York, pp. 397-420.
52. Smyth G.K., Michaud J., Scott H.S. Use of within-array replicate spots for assessing differential expression in microarray experiments. Bioinformatics 2005, 21:2067-2075.
53. Smyth G.K., Speed T. Normalization of cDNA microarray data. Methods 2003, 31:265-273.
54. Sorkin A., von Zastrow M. Endocytosis and signalling: intertwining molecular networks. Nat. Rev. Mol. Cell Biol. 2009, 10:609-622.
55. Stice S.L., Strelchenko N.S., Keefer C.L., Matthews L. Pluripotent bovine embryonic cell lines direct embryonic development following nuclear transfer. Biol. Reprod. 1996, 54:100-110.
56. Su J.M., Yang B., Wang Y.S., Li Y.Y., Xiong X.R., Wang L.J., Guo Z.K., Zhang Y. Expression and methylation status of imprinted genes in placentas of deceased and live cloned transgenic calves. Theriogenology 2011, 75:1346-1359.
57. Sullivan E.J., Kasinathan S., Kasinathan P., Robl J.M., Collas P. Cloned calves from chromatin remodeled in vitro. Biol. Reprod. 2004, 70:146-153.
58. Suzuki J., Therrien J., Filion F., Lefebvre R., Goff A.K., Smith L.C. In vitro culture and somatic cell nuclear transfer affect imprinting of SNRPN gene in pre- and post-implantation stages of development in cattle. BMC Dev. Biol. 2009, 9:9.
59. Swales A.K., Spears N. Genomic imprinting and reproduction. Reproduction 2005, 130:389-399.
60. Takahashi K., Nakayama K. Mice lacking a CDK inhibitor, p57Kip2, exhibit skeletal abnormalities and growth retardation. J. Biochem. 2000, 127:73-83.
61. Wu Z., Irizarry R.A. Stochastic models inspired by hybridization theory for short oligonucleotide arrays. J. Comput. Biol. 2005, 12:882-893.
62. Yang X., Smith S.L., Tian X.C., Lewin H.A., Renard J.P., Wakayama T. Nuclear reprogramming of cloned embryos and its implications for therapeutic cloning. Nat. Genet. 2007, 39:295-302.
63. Zhou W., Xiang T., Walker S., Farrar V., Hwang E., Findeisen B., Sadeghieh S., Arenivas F., Abruzzese R.V., Polejaeva I. Global gene expression analysis of bovine blastocysts produced by multiple methods. Mol. Reprod. Dev. 2008, 75:744-758.