Shrimp Dscam and its cytoplasmic tail splicing activator serine/arginine (SR)-rich protein B52 were both induced after white spot syndrome virus challenge

Fish and Shellfish Immunology

Volumn 34, Issue 1, 2013, Pages 209-219

  Chiang, Yi An ^a   Hung, Hsin Yi ^a   Lee, Chung Wei ^a   Huang, Yun Tzu ^a   Wang, Han Ching ^a  

^a NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

Alternative splicing activator; Down syndrome cell adhesion molecule; Litopenaeus vannamei; Serine arginine (SR) rich protein B52; White spot syndrome virus

Indexed keywords

DECAPODA (CRUSTACEA); LITOPENAEUS VANNAMEI; SHRIMP WHITE SPOT SYNDROME VIRUS;

EID: 84871622698     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2012.10.021     Document Type: Article

References (40)

1. Birney E., Kumar S., Krainer A.R. Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res 1993, 21:5803-5816.
2. Black D.L. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology. Cell 2000, 103:367-370.
3. Brites D., McTaggart S., Morris K., Anderson J., Thomas K., Colson I., et al. The Dscam homologue of the crustacean Daphnia is diversified by alternative splicing like in insects. Mol Biol Evol 2008, 25:1429-1439.
4. Bruce S.R., Dingle R.W., Peterson M.L. B-cell and plasma-cell splicing differences: a potential role in regulated immunoglobulin RNA processing. RNA 2003, 9:1264-1273.
5. Champlin D.T., Frasch M., Saumweber H., Lis J.T. Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. Genes Dev 1991, 5:1611-1621.
6. Chen I.T., Aoki T., Huang Y.T., Hirono I., Chen T.C., Huang J.Y., et al. White spot syndrome virus induces metabolic changes resembling the Warburg effect in shrimp hemocytes in the early stage of infection. J Virol 2011, 85:12919-12928.
7. Chou P.H., Chang H.S., Chen I.T., Lin H.Y., Chen Y.M., Yang H.L., et al. The putative invertebrate adaptive immune protein Litopenaeus vannamei Dscam (LvDscam) is the first reported Dscam to lack a transmembrane domain and cytoplasmic tail. Dev Comp Immunol 2009, 33:1258-1267.
8. Chou P.H., Chang H.S., Chen I.T., Lee C.W., Hung H.Y., Wang K.C. Penaeus monodon Dscam (PmDscam) has a highly diverse cytoplasmic tail and is the first membrane-bound shrimp Dscam to be reported. Fish Shellfish Immunol 2011, 30:1109-1123.
9. Dong Y., Taylor H.E., Dimopoulos G. AgDscam, a hypervariable immunoglobulin domain-containing receptor of the Anopheles gambiae innate immune system. PLoS Biol 2006, 4:e229.
10. El Shikh M.E., El Sayed R.M., Szakal A.K., Tew J.G. T-independent antibody responses to T-dependent antigens: a novel follicular dendritic cell-dependent activity. J Immunol 2009, 182:3482-3491.
11. Gabut M., Dejardin J., Tazi J., Soret J. The SR family proteins B52 and dASF/SF2 modulate development of the Drosophila visual system by regulating specific RNA targets. Mol Cell Biol 2007, 27:3087-3097.
12. Hattori D., Millard S.S., Wojtowicz W.M., Zipursky S.L. Dscam-mediated cell recognition regulates neural circuit formation. Annu Rev Cell Dev Biol 2008, 24:597-620.
13. Hoffman B.E., Lis J.T. Pre-mRNA splicing by the essential Drosophila protein B52: tissue and target specificity. Mol Cell Biol 2000, 20:181-186.
14. Huang J., Wang Y., Raghavan S., Feng S., Kiesewetter K., Wang J. Human down syndrome cell adhesion molecules (DSCAMs) are functionally conserved with Drosophila Dscam[TM1] isoforms in controlling neurodevelopment. Insect Biochem Mol Biol 2011, 41:778-787.
15. Johnson J.M., Castle J., Garrett-Engele P., Kan Z., Loerch P.M., Armour C.D., et al. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 2003, 302:2141-2144.
16. Kim S., Shi H., Lee D.K., Lis J.T. Specific SR protein-dependent splicing substrates identified through genomic SELEX. Nucleic Acids Res 2003, 31:1955-1961.
17. Lee C.W., Chen I.T., Chou P.H., Hung H.Y., Wang K.C. Heterogeneous nuclear ribonucleoprotein hrp36 acts as an alternative splicing repressor in Litopenaeus vannamei Dscam. Dev Comp Immunol 2012, 36:10-20.
18. Long J.C., Caceres J.F. The SR protein family of splicing factors: master regulators of gene expression. Biochem J 2009, 417:15-27.
19. Lynch K.W. Consequences of regulated pre-mRNA splicing in the immune system. Nat Rev Immunol 2004, 4:931-940.
20. Martinez-Contreras R., Cloutier P., Shkreta L., Fisette J.F., Revil T., Chabot B. hnRNP proteins and splicing control. Adv Exp Med Biol 2007, 623:123-147.
21. Martinez N.M., Pan Q., Cole B.S., Yarosh C.A., Babcock G.A., Heyd F., et al. Alternative splicing networks regulated by signaling in human T cells. RNA 2012, 18:1029-1040.
22. McHeyzer-Williams L.J., McHeyzer-Williams M.G. Antigen-specific memory B cell development. Annu Rev Immunol 2005, 23:487-513.
23. Nilsen T.W., Graveley B.R. Expansion of the eukaryotic proteome by alternative splicing. Nature 2010, 463:457-463.
24. Olson S., Blanchette M., Park J., Savva Y., Yeo G.W., Yeakley J.M., et al. A regulator of Dscam mutually exclusive splicing fidelity. Nat Struct Mol Biol 2007, 14:1134-1140.
25. Pan Q., Shai O., Lee L.J., Frey B.J., Blencowe B.J. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet 2008, 40:1413-1415.
26. Park J.W., Parisky K., Celotto A.M., Reenan R.A., Graveley B.R. Identification of alternative splicing regulators by RNA interference in Drosophila. Proc Natl Acad Sci U S A 2004, 101:15974-15979.
27. Peterson M.L. Mechanisms controlling production of membrane and secreted immunoglobulin during B cell development. Immunol Res 2007, 37:33-46.
28. Ring H.Z., Lis J.T. The SR protein B52/SRp55 is essential for Drosophila development. Mol Cell Biol 1994, 14:7499-7506.
29. Schmucker D., Clemens J.C., Shu H., Worby C.A., Xiao J., Muda M., et al. Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity. Cell 2000, 101:671-684.
30. Schmucker D., Chen B. Dscam and DSCAM: complex genes in simple animals, complex animals yet simple genes. Genes Dev 2009, 23:147-156.
31. Shi L., Yu H.H., Yang J.S., Lee T. Specific Drosophila Dscam juxtamembrane variants control dendritic elaboration and axonal arborization. J Neurosci 2007, 27:6723-6728.
32. Wang E.T., Sandberg R., Luo S., Khrebtukova I., Zhang L., Mayr C., et al. Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456:470-476.
33. Wang J., Ma X., Yang J.S., Zheng X., Zugates C.T., Lee C.H., et al. Transmembrane/juxtamembrane domain-dependent Dscam distribution and function during mushroom body neuronal morphogenesis. Neuron 2004, 43:663-672.
34. Wang K.C., Kondo H., Hirono I., Aoki T. The Marsupenaeus japonicus voltage-dependent anion channel (MjVDAC) protein is involved in white spot syndrome virus (WSSV) pathogenesis. Fish Shellfish Immunol 2010, 29:94-103.
35. Watson F.L., Püttmann-Holgado R., Thomas F., Lamar D.L., Hughes M., Kondo M., et al. Extensive diversity of Ig-superfamily proteins in the immune system of insects. Science 2005, 309:1874-1878.
36. Watthanasurorot A., Jiravanichpaisal P., Liu H., Söderhäll I., Söderhäll K. Bacteria-induced Dscam isoforms of the Crustacean, Pacifastacus leniusculus. PLoS Pathog 2011, 7:e1002062.
37. Yang J.S., Bai J.M., Lee T. Dynein-dynactin complex is essential for dendritic restriction of TM1-containing Drosophila Dscam. PLoS One 2008, 3:e3504.
38. Yeh Y.C., Lee C.W., Pan Y.W., Hsu Y.J., Hung H.Y., Chen Y.M., et al. Identification and characterization of DSCAM isoforms isolated from orange-spotted grouper Epinephelus coioides. Dev Comp Immunol 2012, 38:148-159.
39. Yu H.H., Yang J.S., Wang J., Huang Y., Lee T. Endodomain diversity in the Drosophila Dscam and its roles in neuronal morphogenesis. J Neurosci 2009, 29:1904-1914.
40. Zahler A.M., Lane W.S., Stolk J.A., Roth M.B. SR proteins: a conserved family of pre-mRNA splicing factors. Genes Dev 1992, 6:837-847.