Identification of genes involved in indole-3-butyric acid-induced adventitious root formation in nodal cuttings of Camellia sinensis (L.) by suppression subtractive hybridization

Gene

Volumn 514, Issue 2, 2013, Pages 91-98

  Wei, Kang ^a   Wang, Liyuan ^a   Cheng, Hao ^a   Zhang, Chengcai ^a   Ma, Chunlei ^a   Zhang, Liqun ^a   Gong, Wuyun ^a   Wu, Liyun ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Adventitious root formation; Auxin; Camellia sinensis; Suppression subtractive hybridization

Indexed keywords

CHALCONE SYNTHASE; COMPLEMENTARY DNA; F BOX PROTEIN; GLUTATHIONE TRANSFERASE; INDOLEBUTYRIC ACID; PEROXIDASE;

ADVENTITIOUS ROOT; ARTICLE; DOWN REGULATION; GENE IDENTIFICATION; GENE ISOLATION; GENE SEQUENCE; GENETIC SCREENING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT METABOLISM; PLANT ROOT; PRIORITY JOURNAL; PROTEIN EXPRESSION; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; TEA; UPREGULATION;

AMINO ACID SEQUENCE; CAMELLIA SINENSIS; DNA, COMPLEMENTARY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; INDOLEACETIC ACIDS; INDOLES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PLANT GROWTH REGULATORS; PLANT PROTEINS; PLANT ROOTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

CAMELLIA SINENSIS;

EID: 84871476646     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.11.008     Document Type: Article

References (53)

1. Ahkami A.H., et al. Molecular physiology of adventitious root formation in Petunia hybrida cuttings: involvement of wound response and primary metabolism. New Phytol. 2009, 181:613-625.
2. Aida M., et al. The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell 2004, 119:109-120.
3. Altschul S.F., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
4. Brinker M., et al. Microarray analyses of gene expression during adventitious root development in Pinus contorta. Plant Physiol. 2004, 135:1526-1539.
5. Buer C.S., Djordjevic M.A. Architectural phenotypes in the transparent testa mutants of Arabidopsis thaliana. J. Exp. Bot. 2009, 60:751-763.
6. Buer C.S., Sukumar P., Muday G.K. Ethylene modulates flavonoid accumulation and gravitropic responses in roots of Arabidopsis. Plant Physiol. 2006, 140:1384-1396.
7. Chen D., et al. Tea polyphenols, their biological effects and potential molecular targets. Histol. Histopathol. 2008, 23:487-496.
8. Cooper W.C. Hormones in relation to root formation on stem cuttings. Plant Physiol. 1935, 10:789-794.
9. Craig K.L., Tyers M. The F-box: a new motif for ubiquitin dependent proteolysis in cell cycle regulation and signal transduction. Prog. Biophys. Mol. Biol. 1999, 72:299-328.
10. Davis T.D., Haissig B.E., Sankhla N. Adventitious root formation in cuttings. Advances in Plant Sciences Series 1988, vol. II:128-142. Dioscorides Press, Portland, Oregon. T.R. Dudley (Ed.).
11. De Klerk G.J., Guan H., Huisman P., Marinova S. Effects of phenolic compounds on adventitious root formation and oxidative decarboxylation of applied indoleacetic acid in Malus 'Jork 9'. Plant Growth Regul. 2011, 63:175-185.
12. Dharmasiri N., Dharmasiri S., Estelle M. The F-box protein TIR1 is an auxin receptor. Nature 2005, 435:441-445.
13. Diatchenko L., et al. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. 1996, 93:6025-6030.
14. Galinha C., et al. PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature 2007, 449:1053-1057.
15. Gaspar T., Penel C., Castillo F., Greppin H. A two-step control of basic and acidic peroxidases and its significance for growth and development. Plant Physiol. 1985, 64:418-423.
16. Geldner N., et al. The Arabidopsis GNOM ARF-GEF Mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 2003, 112:219-230.
17. Hellemans J., Mortier G., De Paepe A., Speleman F., Vandesompele J. qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007, 8:2.
18. Igamberdiev A.U., Gardeström P. Regulation of NAD- and NADP-dependent isocitratedehydrogenases by reduction levels of pyridine nucleotides in mitochondria and cytosol of pea leaves. Biochim. Biophys. Acta Bioenerg. 2003, 1606:117-125.
19. Iglesias M.J., Terrile M.C., Bartoli C.G., Ippólito S.D., Casalongué C.A. Auxin signaling participates in the adaptative response against oxidative stress and salinity by interacting with redox metabolism in Arabidopsis. Plant Mol. Biol. 2010, 74:215-222.
20. Imin N., Nizamidin M., Wu T., Rolfe B.G. Factors involved in root formation in Medicago truncatula. J. Exp. Bot. 2007, 58:439-451.
21. Jiang H.W., Liu M.J., Chen I.C., Huang C.H., Chao L.Y., Hsieh H.L. A glutathione S-transferase regulated by light and hormones participates in the modulation of Arabidopsis seedling development. Plant Physiol. 2010, 154:1646-1658.
22. Kuhn B.M., Geisler M., Bigler L., Ringli C. Flavonols accumulate asymmetrically and affect auxin transport in Arabidopsis. Plant Physiol. 2011, 156:585-595.
23. 2. Environ. Exp. Bot. 2009, 66:442-450.
24. Li T., Wang Y., Zhang X., Han Z. Isolation and characterization of ARRO-1 genes from apple rootstocks in response to auxin treatment. Plant Mol. Biol. Rep. 2012, 30:1408-1414.
25. Lindroth A.M., Kvarnheden A., von Arnold S. Isolation of a PSTAIRE CDC2 cDNA from Pinus contorta and its expression during adventitious root development. Plant Physiol. Biochem. 2001, 39:107-114.
26. Liu H., et al. ARL1, a LOB-domain protein required for adventitious root formation in rice. Plant J. 2005, 43:47-56.
27. Ludwig-Müller J. Indole-3-butyric acid in plant growth and development. Plant Growth Regul. 2000, 32:219-230.
28. Ludwig-Müller J., Vertocnik A., Town C.D. Analysis of indole-3-butyric acid-induced adventitious root formation on Arabidopsis stem segments. J. Exp. Bot. 2005, 56:2095-2105.
29. Mathesius U. Flavonoids induced in cells undergoing nodule organogenesis in white clover are regulators of auxin breakdown by peroxidase. J. Exp. Bot. 2001, 52:419-426.
30. Morgan P.W., Hall W.C. Accelerated release of ethylene by cotton following application of indole-3-acetic acid. Nature 1964, 201:91.
31. Morris A.C., Djordjevic M.A. The Rhizobium leguminosarum biovar trifolii anu794 induces novel developmental responses on the subterranean clover cultivar woogenellup. Mol. Plant Microbe Interact. 2006, 19:471-479.
32. Namasivayam P., Hanke D. Identification of differentially expressed sequences in pre-embryogenic tissue of oilseed rape by suppression subtractive hybridisation (SSH). Plant Cell Tissue Organ Cult. 2006, 86:417-421.
33. Overvoorde P., Fukaki H., Beeckman T. Auxin control of root development. Cold Spring Harb. Perspect. Biol. 2010, 2:a001537.
34. Peer W.A., Murphy A.S. Flavonoids and auxin transport: modulators or regulators?. Trends Plant Sci. 2007, 12:556-563.
35. Potters G., Pasternak T.P., Guisez Y., Jansen M.A. Different stresses, similar morphogenic responses: integrating a plethora of pathways. Plant Cell Environ. 2009, 32:158-169.
36. Rapaka V.K., Faust J.E., Dole J.M., Runkle E.S. Endogenous carbohydrate status affects postharvest ethylene sensitivity in relation to leaf senescence and adventitious root formation in Pelargonium cuttings. Postharvest Biol. Technol. 2008, 48:272-282.
37. Rout G.R. Effect of auxins on adventitious root development from single node cuttings of Camellia sinensis (L.) Kuntze and associated biochemical changes. Plant Growth Regul. 2006, 48:111-117.
38. Ruepp A., et al. The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res. 2004, 32:5539-5545.
39. Shao T., et al. A novel gene IBF1 is required for the inhibition of brown pigment deposition in rice hull furrows. Theor. Appl. Genet. 2012, 125:381-390.
40. Sitbon F., Hennion S., Little C.H.A., Sundberg B. Enhanced ethylene production and peroxidase activity in IAA-overproducing transgenic tobacco plants is associated with increased lignin content and altered lignin composition. Plant Sci. 1999, 141:165-173.
41. Smith A.P., et al. Arabidopsis AtGSTF2 is regulated by ethylene and auxin, and encodes a glutathione S-transferase that interacts with flavonoids. Plant J. 2003, 36:433-442.
42. Steinmann T., et al. Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF. Science 1999, 286:316-318.
43. Sulpice R., et al. Starch as a major integrator in the regulation of plant growth. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:10348-10353.
44. Sun X.Y., et al. Determination of genes involved in the early process of embryonic implantation in Rhesus monkey (Macaca mulatta) by suppression subtractive hybridization. Biol. Reprod. 2004, 70:1365-1373.
45. Syros T., Yupsanis T., Zafiriadis H., Economou A. Activity and isoforms of peroxidases, lignin and anatomy, during adventitious rooting in cuttings of Ebenus cretica L. J. Plant Physiol. 2004, 161:69-77.
46. Tanimoto M., Roberts K., Dolan L. Ethylene is a positive regulator of root hair development in Arabidopsis thaliana. Plant J. 1995, 8:943-948.
47. Tian Q., Reed J.W. Control of auxin-regulated root development by the Arabidopsis thaliana SHY2/IAA3 gene. Development 1999, 126:711-721.
48. Tsuwamoto R., Fukuoka H., Takahata Y. Identification and characterization of genes expressed in early embryogenesis from microspores of Brassica napus. Planta 2007, 225:641-652.
49. van der Merwe M.J., et al. Tricarboxylic acid cycle activity regulates tomato root growth via effects on secondary cell wall production. Plant Physiol. 2010, 153:611-621.
50. Wasson A.P., Pellerone F.I., Mathesius U. Silencing the flavonoid pathway in Medicago truncatula inhibits root nodule formation and prevents auxin transport regulation by rhizobia. Plant Cell 2006, 18:1617-1629.
51. Wasson A.P., Ramsay K., Jones M.G.K., Mathesius U. Differing requirements for flavonoids during the formation of lateral roots, nodules and root knot nematode galls in Medicago truncatula. New Phytol. 2009, 183:167-179.
52. Wei K., et al. Catechin contents in tea (Camellia sinensis) as affected by cultivar and environment and their relation to chlorophyll contents. Food Chem. 2011, 125:44-48.
53. Zolman B.K., Martinez N., Millius A., Adham A.R., Bartel B. Identification and characterization of Arabidopsis indole-3-butyric acid response mutants defective in novel peroxisomal enzymes. Genetics 2008, 180:237-251.