메뉴 건너뛰기




Volumn 14, Issue 1, 2012, Pages 65-83

Morphological and molecular diversity of Radopholus on coffee in Vietnam and description of R. daklakensis sp. n. from Robusta coffee

Author keywords

canonical discriminant analysis; D2 D3; ITS; morphology; morphometrics; new species; phylogeny; Radopholus arabocoffeae; Radopholus duriophilus; regions

Indexed keywords

CANONICAL ANALYSIS; COFFEE; MORPHOLOGY; MORPHOMETRY; NEMATODE; NEW SPECIES; PHYLOGENETICS; PHYLOGENY; SPECIES DIVERSITY;

EID: 84871392206     PISSN: 13885545     EISSN: 15685411     Source Type: Journal    
DOI: 10.1163/138855411X578374     Document Type: Article
Times cited : (10)

References (44)
  • 3
    • 0000341579 scopus 로고
    • Redescription ou modification de quelques techniques utilisés dans l'étude des nématodes phytoparasitaires
    • DE GRISSE, A.T. (1969). Redescription ou modification de quelques techniques utilisés dans l'étude des nématodes phytoparasitaires. Mededelingen van de Rijksfakulteit Land-bouwwetenschappen Gent 34, 351-369.
    • (1969) Mededelingen Van de Rijksfakulteit Land-bouwwetenschappen Gent , vol.34 , pp. 351-369
    • De Grisse, A.T.1
  • 4
    • 0342445440 scopus 로고    scopus 로고
    • Molecular and morphological characterisation of two reproduc-tively isolated species with mirror-image anatomy (Nema-toda: Cephalobidae)
    • DE LEY, P., FELIX, M.A., FRISSE, L.M., NADLER, S.A., STERNBERG, P.W. & THOMAS, W.K. (1999). Molecular and morphological characterisation of two reproduc-tively isolated species with mirror-image anatomy (Nema-toda: Cephalobidae). Nematology 1, 591-612.
    • (1999) Nematology , vol.1 , pp. 591-612
    • De Ley, P.1    Felix, M.A.2    Frisse, L.M.3    Nadler, S.A.4    Sternberg, P.W.5    Thomas, W.K.6
  • 7
    • 84871367562 scopus 로고    scopus 로고
    • Diversity of Radopholus similis (Cobb, 1893) (Nematoda: Tylenchida)
    • ELBADRI, G.A. (2001). Diversity of Radopholus similis (Cobb, 1893) (Nematoda: Tylenchida). Infomusa 10, 39.
    • (2001) Infomusa , vol.10 , pp. 39
    • Elbadri, G.A.1
  • 8
    • 0001432997 scopus 로고    scopus 로고
    • Morphological differences among Radopholus similis (Cobb, 1893) Thorne, 1949 populations
    • ELBADRI, G.A.A., GERAERT, E. & MOENS, M. (1999a). Morphological differences among Radopholus similis (Cobb, 1893) Thorne, 1949 populations. Russian Journal of Nemato-logy 7, 139-153.
    • (1999) Russian Journal of Nemato-logy , vol.7 , pp. 139-153
    • Elbadri, G.A.A.1    Geraert, E.2    Moens, M.3
  • 9
    • 0002944980 scopus 로고    scopus 로고
    • Morphological difference among Radopholus populations (Nematoda: Tylenchida) from banana in Africa
    • ELBADRI, G.A.A., GERAERT, E. & MOENS, M. (1999b). Morphological difference among Radopholus populations (Nematoda: Tylenchida) from banana in Africa. Journal of Nematode Morphology and Systematics 2, 1-16.
    • (1999) Journal of Nematode Morphology and Systematics , vol.2 , pp. 1-16
    • Elbadri, G.A.A.1    Geraert, E.2    Moens, M.3
  • 10
    • 0036151231 scopus 로고    scopus 로고
    • In-traspecific variation in Radopholus similis isolates assessed with restriction fragment length polymorphism and DNA sequencing of the internal transcribed spacer region of the ri-bosomal RNA cistron
    • ELBADRI, G.A.A., DE LEY, P., WAEYENBERGE, L., VIER-STRAETE, A., MOENS, M. & VANFLETEREN, J. (2002). In-traspecific variation in Radopholus similis isolates assessed with restriction fragment length polymorphism and DNA sequencing of the internal transcribed spacer region of the ri-bosomal RNA cistron. International Journal for Parasitology 32, 199-205.
    • (2002) International Journal for Parasitology , vol.32 , pp. 199-205
    • Elbadri, G.A.A.1    De Ley, P.2    Waeyenberge, L.3    Vier-Straete, A.4    Moens, M.5    Vanfleteren, J.6
  • 11
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • HALL, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 12
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • HUELSENBECK, J.P. & RONQUIST, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 13
    • 0002857112 scopus 로고
    • Application of polymerase chain reaction (PCR) methods to identification of entomopathogenic nematodes
    • In: Bur-nell, A.M., Ehlers, R.-U. & Masson, J.P. (Eds) Proceedings of Symposium & Workshop, St Patrick's College, Maynooth, Co. Kildare, Ireland, Luxembourg, European Commission, DG XII
    • JOYCE, S.A., REID, A., DRIVER, F. & CURRAN, J. (1994). Application of polymerase chain reaction (PCR) methods to identification of entomopathogenic nematodes. In: Bur-nell, A.M., Ehlers, R.-U. & Masson, J.P. (Eds). COST 812 Biotechnology: Genetics of entomopathogenic nematode-bacterium complexes. Proceedings of Symposium & Workshop, St Patrick's College, Maynooth, Co. Kildare, Ireland, Luxembourg, European Commission, DG XII, pp. 178-187.
    • (1994) COST 812 Biotechnology: Genetics of Entomopathogenic Nematode-bacterium Complexes , pp. 178-187
    • Joyce, S.A.1    Reid, A.2    Driver, F.3    Curran, J.4
  • 14
    • 0034336724 scopus 로고    scopus 로고
    • Reproductive strategies and karyotype of the burrowing nematode, Radopholus similis
    • KAPLAN, D.T. & OPPERMAN, C.H. (2000). Reproductive strategies and karyotype of the burrowing nematode, Radopholus similis. Journal of Nematology 32, 126-133.
    • (2000) Journal of Nematology , vol.32 , pp. 126-133
    • Kaplan, D.T.1    Opperman, C.H.2
  • 15
    • 0031448043 scopus 로고    scopus 로고
    • Sequence tag site and host range assays demonstrate that Radopholus similis and R. citrophilus are not reproduc-tively isolated
    • KAPLAN, D.T., VANDERSPOOL, M.C. & OPPERMAN, C.H. (1997). Sequence tag site and host range assays demonstrate that Radopholus similis and R. citrophilus are not reproduc-tively isolated. Journal of Nematology 29, 421-429.
    • (1997) Journal of Nematology , vol.29 , pp. 421-429
    • Kaplan, D.T.1    Vanderspool, M.C.2    Opperman, C.H.3
  • 17
    • 0006395214 scopus 로고
    • Studies on nematodes in coffee soils of South India. 3. A report on Radopholus similis and description of R. colbrani n. sp
    • KUMAR, K. (1980). Studies on nematodes in coffee soils of South India. 3. A report on Radopholus similis and description of R. colbrani n. sp. Journal of Coffee Research 10, 43-46.
    • (1980) Journal of Coffee Research , vol.10 , pp. 43-46
    • Kumar, K.1
  • 18
    • 0030484565 scopus 로고    scopus 로고
    • Radopholus citri n. sp. (Tylenchida: Pratylenchidae) and its pathogenicity on citrus
    • MACHON, J.E. & BRIDGE, J. (1996). Radopholus citri n. sp. (Tylenchida: Pratylenchidae) and its pathogenicity on citrus. Fundamental and Applied Nematology 19, 127-133.
    • (1996) Fundamental and Applied Nematology , vol.19 , pp. 127-133
    • MacHon, J.E.1    Bridge, J.2
  • 19
    • 0006394348 scopus 로고
    • Description of Radopholus sanoi n. sp. from Kyushu, Japan
    • MIZUKUBO, T. (1989). Description of Radopholus sanoi n. sp. from Kyushu, Japan. Japanese Journal of Nematology 8, 39-44.
    • (1989) Japanese Journal of Nematology , vol.8 , pp. 39-44
    • Mizukubo, T.1
  • 20
    • 77955077605 scopus 로고    scopus 로고
    • Burrowing nematodes from Colombia and their relationship with Radopholus similis populations, R. arabocoffeae and R. duriophilus
    • MUNERA, G.E., BERT, W., VIERSTRAETE, A.R., DE LA PEÑA, E., MOENS, M. & DECRAEMER, W. (2010). Burrowing nematodes from Colombia and their relationship with Radopholus similis populations, R. arabocoffeae and R. duriophilus. Nematology 12, 619-629.
    • (2010) Nematology , vol.12 , pp. 619-629
    • Munera, G.E.1    Bert, W.2    Vierstraete, A.R.3    De La Peña, E.4    Moens, M.5    Decraemer, W.6
  • 24
    • 0348196970 scopus 로고    scopus 로고
    • Radopholus duriophilus sp n. (Nematoda: Pratylenchidae) from western highland of Vietna m
    • NGUYEN, C.N., SUBBOTIN, S.A., MADANI, M., TRINH, P. Q. & M OENS, M. (2003). Radopholus duriophilus sp n. (Nematoda: Pratylenchidae) from western highland of Vietna m. Nematology 5, 549-558.
    • (2003) Nematology , vol.5 , pp. 549-558
    • Nguyen, C.N.1    Subbotin, S.A.2    Madani, M.3    Trinh, P.Q.4    Oens M, M.5
  • 26
    • 0001638859 scopus 로고
    • Migratory endopar-Asitic nematodes reared on carrot disks
    • O'BANNON, J.H. & TAYLOR, A.L. (1968). Migratory endopar-Asitic nematodes reared on carrot disks. Phytopathology 58, 385.
    • (1968) Phytopathology , vol.58 , pp. 385
    • O'Bannon, J.H.1    Taylor, A.L.2
  • 27
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • PAGE, R.D.M. (1996). TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 28
    • 77952619379 scopus 로고    scopus 로고
    • Description of Pratylenchus hispanien-sis n. sp. from Spain and considerations on the phylogenetic relationship among selected genera in the family Pratylenchi-dae
    • PALOMARES-RIUS, J.E., CASTILLO, P., LIEBANAS, G., VOVLAS, N., LANDA, B.B., NAVA S-CORTES, J.A. & SUB-BOTIN, S.A. (2010). Description of Pratylenchus hispanien-sis n. sp. from Spain and considerations on the phylogenetic relationship among selected genera in the family Pratylenchi-dae. Nematology 12, 429-451.
    • (2010) Nematology , vol.12 , pp. 429-451
    • Palomares-Rius, J.E.1    Castillo, P.2    Liebanas, G.3    Vovlas, N.4    Landa, B.B.5    Nava S-Cortes, J.A.6    Sub-Botin, S.A.7
  • 29
    • 85093700122 scopus 로고    scopus 로고
    • Distribution and diversity of root-lesion nematodes (Pratylenchus spp.) associated with Ammophila arenaria in coastal dunes of Western Europe
    • DE LA PEÑA, E., KARSSEN, G. & MOENS, M. (2007). Distribution and diversity of root-lesion nematodes (Pratylenchus spp.) associated with Ammophila arenaria in coastal dunes of Western Europe. Nematology 9, 881-901.
    • (2007) Nematology , vol.9 , pp. 881-901
    • De La Peña, E.1    Karssen, G.2    Moens, M.3
  • 31
    • 27644438524 scopus 로고    scopus 로고
    • Taxonomy, evolution and phylogeny of the genus Radopholus (didelphic species) according to morphological data, with a key to species (Nematoda: Tylenchida)
    • RYSS, A.Y. (2002). Taxonomy, evolution and phylogeny of the genus Radopholus (didelphic species) according to morphological data, with a key to species (Nematoda: Tylenchida). Zoosystematica Rossica 11, 243-256.
    • (2002) Zoosystematica Rossica , vol.11 , pp. 243-256
    • Ryss, A.Y.1
  • 32
    • 78149345739 scopus 로고    scopus 로고
    • Observations on Radopholus Bridgei Siddiqi & Hahn 1995 intercepted in exotic aquarium plants imported to Poland
    • RYSS, A.Y. & KARNKOWSKI, W. (2010). Observations on Radopholus bridgei Siddiqi & Hahn, 1995 intercepted in exotic aquarium plants imported to Poland. Nematology 12, 827-833.
    • (2010) Nematology , vol.12 , pp. 827-833
    • Ryss, A.Y.1    Karnkowski, W.2
  • 33
    • 0002769858 scopus 로고    scopus 로고
    • The genus Radopholus (Nematoda: Pratylenchidae) from native vegetation in New Zealand, with descriptions of two new species
    • RYSS, A.Y. & WOUTS, W.M. (1997). The genus Radopholus (Nematoda: Pratylenchidae) from native vegetation in New Zealand, with descriptions of two new species. International Journal of Nematology 7, 1-17.
    • (1997) International Journal of Nematology , vol.7 , pp. 1-17
    • Ryss, A.Y.1    Wouts, W.M.2
  • 34
    • 0006395215 scopus 로고
    • Radopholus bridgei sp. n. (Tylenchida: Pratylenchidae) from Indonesia and its differentiation by morphological and molecular characters
    • SIDDIQI, M.R. & HAHN, M.L. (1995). Radopholus bridgei sp. n. (Tylenchida: Pratylenchidae) from Indonesia and its differentiation by morphological and molecular characters. Afro-Asian Journal of Nematology 5, 38-43.
    • (1995) Afro-Asian Journal of Nematology , vol.5 , pp. 38-43
    • Siddiqi, M.R.1    Hahn, M.L.2
  • 35
    • 79953174663 scopus 로고    scopus 로고
    • Other coffee associated nematodes
    • In: Souza, R.M. (Ed.) Dordrecht, The Netherlands, Springer Science & Business Media B.V.
    • SOUZA, R.M. (2008). Other coffee associated nematodes. In: Souza, R.M. (Ed.). Plant parasitic nematodes of coffee. Dordrecht, The Netherlands, Springer Science & Business Media B.V., pp. 209-222.
    • (2008) Plant Parasitic Nematodes of Coffee , pp. 209-222
    • Souza, R.M.1
  • 36
    • 0035573769 scopus 로고    scopus 로고
    • Radopholus musicola n. sp., a new pathogenic species from Australia (Nematoda: Pratylenchi-dae)
    • STANTON, J., MUNDO-OCAMPO, M., BALDWIN, J.G. & KAPLAN, D. (2001). Radopholus musicola n. sp., a new pathogenic species from Australia (Nematoda: Pratylenchi-dae). Nematology 3, 689-698.
    • (2001) Nematology , vol.3 , pp. 689-698
    • Stanton, J.1    Mundo-Ocampo, M.2    Baldwin, J.G.3    Kaplan, D.4
  • 37
    • 33749597765 scopus 로고    scopus 로고
    • Phylogenetic analysis of Ty-lenchida Thorne, 1949 as inferred from D2 and D3 expansion fragments of the 28S rRNA gene sequences
    • SUBBOTIN, S.A., STURHAN, D., CHIZHOV, V.N., VOVLAS, N. & BALDWIN, J.G. (2006). Phylogenetic analysis of Ty-lenchida Thorne, 1949 as inferred from D2 and D3 expansion fragments of the 28S rRNA gene sequences. Nematology 8, 455-474.
    • (2006) Nematology , vol.8 , pp. 455-474
    • Subbotin, S.A.1    Sturhan, D.2    Chizhov, V.N.3    Vovlas, N.4    Baldwin, J.G.5
  • 39
    • 78650690874 scopus 로고    scopus 로고
    • Support for the 'out-of-Southeast Asia' hypothesis for the origin of Australian populations of Radopholus similis (Cobb, 1893) (Nematoda: Pratylenchidae)
    • TAN, M., COBON, J., AITKEN, E. & COOK, L.G. (2010). Support for the 'out-of-Southeast Asia' hypothesis for the origin of Australian populations of Radopholus similis (Cobb, 1893) (Nematoda: Pratylenchidae). Systematic Parasitology 7, 175-183.
    • (2010) Systematic Parasitology , vol.7 , pp. 175-183
    • Tan, M.1    Cobon, J.2    Aitken, E.3    Cook, L.G.4
  • 40
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • THOMPSON, J.D., GIBSON, T.J., PLEWNIAK, F., JEANMOU-GIN, F. & HIGGINS, D.G. (1997). The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24, 4876-4882.
    • (1997) Nucleic Acids Research , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmou-Gin, F.4    Higgins, D.G.5
  • 41
    • 16844367622 scopus 로고    scopus 로고
    • Rado-pholus arabocoffeae sp n. (Nematoda: Pratylenchidae), a ne-matode pathogenic to Coffea arabica in Vietnam, and additional data on R. duriophilus
    • TRINH, P.Q., NGUYEN, C.N., WAEYENBERGE, L., SUB-BOTIN, S.A., KARSSEN, G. & MOENS, M. (2004). Rado-pholus arabocoffeae sp n. (Nematoda: Pratylenchidae), a ne-matode pathogenic to Coffea arabica in Vietnam, and additional data on R. duriophilus. Nematology 6, 681-693.
    • (2004) Nematology , vol.6 , pp. 681-693
    • Trinh, P.Q.1    Nguyen, C.N.2    Waeyenberge, L.3    Sub-Botin, S.A.4    Karssen, G.5    Moens, M.6
  • 43
    • 0032029878 scopus 로고    scopus 로고
    • Scanning electron microscope study of two African populations of Radopholus similis (Nematoda: Pratylenchidae) and proposal of R. citrophilus as a junior synonym of R. similis
    • VALETTE, C., MOUNPORT, D., NICOLE, M., SARAH, J.L. & BAUJARD, P. (1998). Scanning electron microscope study of two African populations of Radopholus similis (Nematoda: Pratylenchidae) and proposal of R. citrophilus as a junior synonym of R. similis. Fundamental and Applied Nematology 21, 139-146.
    • (1998) Fundamental and Applied Nematology , vol.21 , pp. 139-146
    • Valette, C.1    Mounport, D.2    Nicole, M.3    Sarah, J.L.4    Baujard, P.5
  • 44
    • 0034117119 scopus 로고    scopus 로고
    • Molecular characterisation of 18 Pratylenchus species using rDNA Restriction Fragment Length Polymorphism
    • WAEYENBERGE, L., RYSS, A., MOENS, M., PINOCHET, J. & VRAIN, T.C. (2000). Molecular characterisation of 18 Pratylenchus species using rDNA Restriction Fragment Length Polymorphism. Nematology 2, 135-142.
    • (2000) Nematology , vol.2 , pp. 135-142
    • Waeyenberge, L.1    Ryss, A.2    Moens, M.3    Pinochet, J.4    Vrain, T.C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.