Description of Pratylenchus hispaniensis n. sp. from Spain and considerations on the phylogenetic relationship among selected genera in the family Pratylenchidae

Nematology

Volumn 12, Issue 3, 2010, Pages 429-451

  Palomares Rius, Juan E ^a   Castillo, Pablo ^a   Liébanas, Gracia ^b   Vovlas, Nicola ^c   Landa, Blanca B ^a   Navas Cortés, Juan A ^a   Subbotin, Sergei A ^d,e  

^a INSTITUTO DE AGRICULTURA SOSTENIBLE   (Spain)

^b UNIVERSITY OF JAÉN   (Spain)

^c INSTITUTE FOR SUSTAINABLE PLANT PROTECTION   (Italy)

^d CALIFORNIA DEPARTMENT OF FOOD AND AGRICULTURE   (United States)

^e SEVERTSOV INSTITUTE OF ECOLOGY AND EVOLUTION   (Russian Federation)

Author keywords

Cistus ladanifer; D2 D3 region; Gum cistus; Molecular; Morphology; Morphometrics; Root lesion nematodes; SEM; Shimodaira Hasegawa test; Taxonomy

Indexed keywords

ALLOMETRY; FUNCTIONAL MORPHOLOGY; GENE EXPRESSION; HOST-PARASITE INTERACTION; MOLECULAR ANALYSIS; MORPHOMETRY; NEMATODE; NEW RECORD; NEW SPECIES; PHYLOGENETICS; REPRODUCTIVE BEHAVIOR; SHRUB; SPECIES DIVERSITY; TAXONOMY;

ANDALUCIA; ANDUJAR; JAEN [ANDALUCIA]; SPAIN;

EID: 77952619379     PISSN: 13885545     EISSN: 15685411     Source Type: Journal    
DOI: 10.1163/138855409X12559479585043     Document Type: Article

References (58)

1. ABOLAFÍA, J., LIÉBANAS, G. & PEÑA-SANTIAGO, R. (2002). Nematodes of the order Rhabditida from Andalucía Oriental, Spain. The subgenus Pseudacrobeles Steiner, 1938, with description of a new species. Journal of Nematode Morphology and Systematics 4, 137-154.
2. AL-BANNA, L.,WILLIAMSON, V. & GARDNER, S.L. (1997). Phylogenetic analysis of nematodes of the genus Pratylenchus using nuclear 26S rDNA. Molecular Phylogenetics and Evolution 7, 94-102.
3. BALDWIN, J.G. (1992). Evolution of cyst and noncystforming Heteroderinae. Annual Review of Phytopathology 30, 271-290.
4. BERT, W., VAN GANSBEKE, R., CLAEYS, M., GERAERT, E. & BORGONIE, G. (2003). Comparative morpho-anatomical studies of the female gonoduct within the Pratylenchidae (Nematoda: Tylenchina). Nematology 5, 293-306.
5. BERT, W., LELIAERT, F., VIERSTRAETE, A., VANFLETEREN, J.R. & BORGONIE, G. (2008). Molecular phylogeny of the Tylenchina and evolution of the female gonoduct (Nematoda: Rhabditida). Molecular Phylogenetics and Evolution 48, 728-744.
6. CAFÉ-FILHO, A.C. & HUANG, C.S. (1989). Description of Pratylenchus pseudofallax n. sp. with a key to species of the genus Pratylenchus Filipjev, 1936 (Nematoda: Pratylenchidae). Revue de Nématologie 12, 7-15.
7. CARTA, L.K., SKANTAR, A.M. & HANDOO, Z.A. (2001). Molecular, morphological and thermal characters of 19 Pratylenchus spp. and relatives using the D3 segment of the nuclear LSU rRNA gene. Nematropica 31, 193-207.
8. CARTA, L.K., HANDOO, Z.A., SKANTAR, A.M., VAN BILJON, J. & BOTHA, M. (2002). A redescription of Pratylenchus teres Khan & Singh, 1974 (Nemata: Pratylenchidae), with the description of a new subspecies from South Africa, and a phylogenetic analysis of related species. African Plant Protection 8, 13-24.
9. CASTILLO, P., VOVLAS, N., SUBBOTIN, S. & TROCCOLI, A. (2003). A new root-knot nematode, Meloidogyne baetica n. sp. (Nematoda: Heteroderidae), parasitizing wild olive in Southern Spain. Phytopathology 93, 1093-1102.
10. CASTILLO, P. & VOVLAS, N. (2007). Pratylenchus (Nematoda: Pratylenchidae): diagnosis, biology, pathogenicity and management. In: Hunt, D.J. & Perry, R.N. (Eds). Nematology monographs and perspectives, Vol.6. Leiden, The Netherlands, Brill Academic Publishers, 529 pp.
11. CHIZHOV, V.N., CHUMAKOVA, O.A., SUBBOTIN, S.A. & BALDWIN, J.G. (2006). Morphological and molecular characterization of foliar nematodes of the genus Aphelenchoides: A. fragariae and A. ritzemabosi (Nematoda: Aphelenchoididae) from the Main Botanical Garden of the Russian Academy of Sciences, Moscow. Russian Journal of Nematology 14, 179-184.
12. COOLEN, W.A. (1979). Methods for extraction of Meloidogyne spp. and other nematodes from roots and soil. In: Lamberti, F. & Taylor, C.E. (Eds). Root-knot nematodes (Meloidogyne species). Systematics, biology and control. New York, NY, USA, Academic Press, pp. 317-329.
13. CORBETT, D.C.M. (1983). Three new species of Pratylenchus with a redescription of P. andinus Lordello, Zamith & Boock, 1961 (Nematoda: Pratylenchidae). Nematologica 29, 390-403.
14. CORBETT, D.C.M. & CLARK, S.A. (1983). Surface features in the taxonomy of Pratylenchus species. Revue de Nématologie 6, 85-98.
15. DE LEY, I.T., DE LEY, P., VIERSTRAETE, A., KARSSEN, G., MOENS, M. & VANFLETEREN, J. (2002). Phylogenetic analyses of Meloidogyne small subunit rDNA. Journal of Nematology 34, 319-327.
16. DE LEY, I.T., MUNDO-OCAMPO, M., YODER, M. & DE LEY, P. (2007). Nematodes from vernal pools in the Santa Rosa Plateau Ecological Reserve, California I. Hirschmanniella santarosae sp. n. (Nematoda: Pratylenchidae), a cryptic sibling species of H. pomponiensis Abdel-Rahman & Maggenti, 1987. Nematology 9, 405-429.
17. DE LEY, P., DE LEY, I.T., MORRIS, K., ABEBE, E.,MUNDO, M., YODER, M., HERAS, J., WAUMANN, D., ROCHAOLIVARES, A., BURR, J., BALDWIN, J.G. & THOMAS, W.K. (2005). An integrated approach to fast and informative morphological vouchering of nematodes for applications in molecular barcoding. Philosophical Transactions of the Royal Society of London B 272, 1945-1958.
18. DE LUCA, F., FANELLI, E., DI VITO, M., REYES, A. & DE GIORGI, C. (2004). Comparison of the sequences of the D3 expansion of the 26S ribosomal genes reveals different degrees of heterogeneity in different populations and species of Pratylenchus from the Mediterranean region. European Journal of Plant Pathology 110, 949-957.
19. DUNCAN, L.W., INSERRA, R.N., THOMAS, W.K., DUNN, D., MUSTIKA, I., FRISSE, L.M., MENDES, M.L., MORRIS, K. & KAPLAN, D.T. (1999). Molecular and morphological analysis of isolates of Pratylenchus coffeae and closely related species. Nematropica 29, 61-80.
20. FREDERICK, J.J. & TARJAN, A.C. (1989). A compendium of the genus Pratylenchus Filipjev, 1936 (Nemata: Pratylenchidae). Revue de Nématologie 12, 243-256.
21. DE GUIRAN, G. (1963). Mesotylus: Nouveau genre de Pratylenchinae (Nematoda: Tylenchoidea). Nematologica 9, 567-575.
22. HANDOO, Z.A. & GOLDEN, A.M. (1989). A key and diagnostic compendium to the species of the genus Pratylenchus Filipjev, 1936 (lesion nematodes). Journal of Nematology 21, 202-218.
23. HANDOO, Z.A., CARTA, L.K. & SKANTAR, A.M. (2008). Taxonomy, morphology and phylogenetics of coffeeassociated root-lesion nematodes, Pratylenchus spp. In: Souza, R.M. (Ed.). Plant-parasitic nematodes of coffee. Dordrecht, The Netherlands, Springer, pp. 29-50.
24. HOLTERMAN, M.H.M. (2007). Phylogenetic relationships within the phylum Nematoda as revealed by ribosomal DNA, and their biological implication. Ph.D. Thesis, Wageningen University, Wageningen, The Netherlands, 208 pp.
25. HOLTERMAN, M., VAN DER WURFF, A., VAN DEN ELSEN, S., VAN MEGEN, H., BONGERS, T., HOLOVACHOV, O., BAKKER, J. & HELDER, J. (2006). Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown clades. Molecular Biology and Evolution 23, 1792-1800.
26. HOLTERMAN, M., KARSSEN, G., VAN DEN ELSEN, S., VAN MEGEN, H., BAKKER, J. & HELDER, J. (2009). Small subunit rDNA-based phylogeny of the Tylenchida sheds light on relationships among some high-impact plant parasitic nematodes and the evolution of plant feeding. Phytopathology 99, 227-235.
27. HUELSENBECK, J.P. & RONQUIST, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
28. KARSSEN, G., WAEYENBERGE, L. & MOENS, M. (2000). Pratylenchus brzeskii sp. nov. (Nematoda: Pratylenchidae), root-lesion nematode from European coastal dunes. Annales Zoologici (Warszawa) 50, 255-261.
29. LA ROSA, P. (2008). Contributions to the knowledge of migratory plant-parasitic nematodes in south-eastern Sicily (Italy). Ph.D. Thesis, University of Catania, College of Agricultural Sciences, Di.S.Te.F., Agricultural Entomology Section, Catania, Italy, 146 pp.
30. LISKOVÁ, M., SASANELLI, N. & D'ADDABBO, T. (2007). Some notes on the occurrence of plant parasitic nematodes on fruit trees in Slovakia. Plant Protection Science 43, 26-32.
31. LOOF, P.A.A. (1991). The family Pratylenchidae Thorne, 1949. In: Nickle, W.R. (Ed.). Manual of agricultural nematology. New York, NY, USA, Marcel Dekker, pp. 363-421.
32. LUC, M. (1987). A reappraisal of Tylenchida (Nemata). 7. The family Pratylenchidae Thorne, 1949. Revue de Nématologie 10, 203-218.
33. NICHOLAS, K.B., NICHOLAS JR, H.B. & DEERFIELD II, D.W. (1997). GeneDoc: analysis and visualization of genetic variation. EMBNEW News 4, 1-14.
34. NYLANDER, J.A.A. (2002).MrModeltest v1.0b. Department of Systematic Zoology, Uppsala University. Available omline at http://www.ebc.uu.se/systzoo/ staff/nylander.html
35. PAGE, R.D.M. (1996). TREEVIEW: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357-358.
36. POURJAM, E., GERAERT, E. & ALIZADEH, A. (2000). Some pratylenchids from Iran (Nematoda: Tylenchina). Nematology 2, 855-869.
37. RYSS, A.Y. (1982). [New species of plant nematodes from the genus Pratylenchus in Estonia.] Eesti NSV Teaduste Akadeemia Toimetised Izvestiya Akademii Nauk Estonskoi SSR, Bioloogia 31, 22-29.
38. RYSS, A.Y. (1988). [World fauna of the root parasitic nematodes of the family Pratylenchidae (Tylenchida).] Leningrad, USSR, Nauka, 367 pp.
39. RYSS, A.Y. (2002a). Genus Pratylenchus Filipjev (Nematoda: Tylenchida: Pratylenchidae): multientry and monoentry keys and diagnostic relationships. Zoosystematica Rossica 10, 241-255.
40. RYSS, A.Y. (2002b). Phylogeny and evolution of the genus Pratylenchus according to morphological data (Nematoda: Tylenchida). Zoosystematica Rossica 10, 257-273.
41. SEINHORST, J.W. (1966). Killing nematodes for taxonomic study with hot f.a. 4:1. Nematologica 12, 178.
42. SHER, S.A. & ALLEN, M.W. (1953). Revision of the genus Pratylenchus (Nematoda: Tylenchidae). University of California Publications in Zoology 57, 441-447.
43. SIDDIQI, M.R. (1963). On the classification of the Pratylenchidae (Thorne, 1949) nov. grad. (Nematoda: Tylenchida), with a description Zygotylenchus browni nov. gen. et nov. sp. Zeitschrift für Parasitenkunde 23, 390-396.
44. SIDDIQI, M.R. (1975). Zygotylenchus guevarai. CIH Descriptions of plant-parasitic nematodes, Set 5, No.65. St Albans, UK, Commonwealth Institute of Helminthology, 3 pp.
45. SIDDIQI, M.R. (1986). Tylenchida parasites of plants and insects. Slough, UK, Commonwealth Agricultural Bureaux, 645 pp.
46. SIDDIQI, M.R. (2000). Tylenchida parasites of plants and insects, 2nd edition. Wallingford, UK, CABI Publishing, 833 pp.
47. SIDDIQI, M.R., DABUR, K.R. & BAJAJ, H.K. (1991). Descriptions of three new species of Pratylenchus Filipjev, 1936 (Nematoda: Pratylenchidae). Nematologia Mediterranea 19, 1-7.
48. SUBBOTIN, S.A., STURHAN, D., CHIZHOV, V.N., VOVLAS, N. & BALDWIN, J.G. (2006). Phylogenetic analysis of Tylenchida Thorne, 1949 as inferred from D2 and D3 expansion fragments of the 28S rRNA gene sequences. Nematology 8, 455-474.
49. SUBBOTIN, S.A., RAGSDALE, E.J., MULLENS, T., ROBERTS, P.A., MUNDO-OCAMPO, M. & BALDWIN, J.G. (2008). A phylogenetic framework for root lesion nematodes of the genus Pratylenchus (Nematoda): evidence from 18S and D2-D3 expansion segments of 28S ribosomal RNA genes and morphological characters. Molecular Phylogenetics and Evolution 48, 491-505.
50. SWOFFORD, D.L. (2003). PAUP?: phylogenetic analysis using parsimony (*and other methods), version 4.0b 10. Sunderland, MA, USA, Sinauer Associates.
51. TANHA MAAFI, Z., SUBBOTIN, S.A. & MOENS, M. (2003). Molecular identification of cyst-forming nematodes (Heteroderidae) from Iran and a phylogeny based on ITS-rDNA sequences. Nematology 5, 99-111.
52. THOMPSON, J.D., GIBSON, T.J., PLEWNIAK, F., JEANMOUGIN, F. & HIGGINS, D.G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25, 4876-4882.
53. TIGANO, M.S., CARNEIRO, R.M.D.G., JEYAPRAKASH, A., DICKSON, D.W. & ADAMS, B.J. (2005). Phylogeny of Meloidogyne spp. based on 18S rDNA and the intergenic region of mitochondrial DNA sequences. Nematology 7, 851-862
54. TOBAR JIMÉNEZ, A. (1963). Pratylenchoides guevarai n. sp., nuevo nematode tylenchido, relacionado con el ciprés (Cu-pressus sempervirens L.). Revista Ibérica de Parasitología 23, 27-36.
55. TRINH, P.Q., WAEYENBERGE, L., NGUYEN, C.N., BALDWIN, J.G., KARSSEN, G. & MOENS, M. (2009). Apratylenchus vietnamensis gen. n., sp. n. and A. binhi gen. n., sp. n., sedentary Pratylenchidae (Nematoda: Tylenchida) from coffee in Vietnam, with proposal of Apratylenchinae subfam. n. Nematology 11, 565-581.
56. TROCCOLI, A., DE LUCA, F., HANDOO, Z.A. & DI VITO, M. (2008). Morphological and molecular characterization of Pratylenchus lentis n. sp. (Nematoda: Pratylenchidae) from Sicily. Journal of Nematology 40, 190-196.
57. UREK, G., SIRCA, S. & KARSSEN, G. (2003). A review of plant-parasitic and soil nematodes in Slovenia. Nematology 5, 391-403.
58. VAN DEN BERG, E. (2003). Zygotylenchus natalensis sp. n. (Nemata: Pratylenchidae) from a potato field in South Africa. Journal of Nematode Morphology and Systematics 5, 145-152.