-
1
-
-
34249844826
-
Phytoplasmas: diversity, taxonomy, and epidemiology
-
Bertaccini A, (2007) Phytoplasmas: diversity, taxonomy, and epidemiology. Front Biosci 12: 673-689.
-
(2007)
Front Biosci
, vol.12
, pp. 673-689
-
-
Bertaccini, A.1
-
2
-
-
45149128856
-
Phytoplasmas: bacteria that manipulate plants and insects
-
Hogenhout SA, Oshima K, Ammar ED, Kakizawa S, Kingdom H, et al. (2008) Phytoplasmas: bacteria that manipulate plants and insects. Mol Plant Pathol 9: 403-423.
-
(2008)
Mol Plant Pathol
, vol.9
, pp. 403-423
-
-
Hogenhout, S.A.1
Oshima, K.2
Ammar, E.D.3
Kakizawa, S.4
Kingdom, H.5
-
3
-
-
4344657077
-
Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects
-
IRPCM Phytoplasma/Spiroplasma Working Team - Phytoplasma taxonomy group
-
IRPCM Phytoplasma/Spiroplasma Working Team - Phytoplasma taxonomy group (2004) 'Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects. Int J Syst Evol Microbiol 54: 1243-1255.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1243-1255
-
-
-
4
-
-
34548153065
-
Computer-simulated RFLP analysis of 16S rRNA genes: identification of ten new phytoplasma groups
-
Wei W, Davis RE, Lee I-M, Zhao Y, (2007) Computer-simulated RFLP analysis of 16S rRNA genes: identification of ten new phytoplasma groups. Int J Syst Evol Microbiol 57: 1855-1867.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 1855-1867
-
-
Wei, W.1
Davis, R.E.2
Lee, I.M.3
Zhao, Y.4
-
5
-
-
0031723762
-
Revised classification scheme of phytoplasmas based on RFLP analyses of 16S rRNA and ribosomal protein gene sequences
-
Lee I-M, Gundersen-Rindal DE, Davis RE, Bartoszyk IM, (1998) Revised classification scheme of phytoplasmas based on RFLP analyses of 16S rRNA and ribosomal protein gene sequences. Int J Syst Bacteriol 48: 1153-1169.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 1153-1169
-
-
Lee, I.-M.1
Gundersen-Rindal, D.E.2
Davis, R.E.3
Bartoszyk, I.M.4
-
6
-
-
0030031124
-
Genomic diversity and differentiation among phytoplasma strains in 16S rRNA groups I (aster yellows and related phytoplasmas) and III (X-disease and related phytoplasmas)
-
Gundersen DE, Lee I-M, Schaff DA, Harrison NA, Chang CJ, et al. (1996) Genomic diversity and differentiation among phytoplasma strains in 16S rRNA groups I (aster yellows and related phytoplasmas) and III (X-disease and related phytoplasmas). Int J Syst Bacteriol 46: 64-75.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 64-75
-
-
Gundersen, D.E.1
Lee, I.-M.2
Schaff, D.A.3
Harrison, N.A.4
Chang, C.J.5
-
7
-
-
0025902153
-
Amplification of 16S rRNA genes from culturable and nonculturable mollicutes
-
Deng S, Hiruki C, (1991) Amplification of 16S rRNA genes from culturable and nonculturable mollicutes. J Microbiol Methods 14: 53-61.
-
(1991)
J Microbiol Methods
, vol.14
, pp. 53-61
-
-
Deng, S.1
Hiruki, C.2
-
8
-
-
0000231293
-
Phylogenetic classification of plant pathogenic mycoplasma-like organisms or phytoplasmas
-
Razin S, Tully JG, editors, San Diego, CA: Academic press
-
Schneider B, Seemüller E, Smart CD, Kirkpatrick BC (1995) Phylogenetic classification of plant pathogenic mycoplasma-like organisms or phytoplasmas. In: Razin S, Tully JG, editors. Molecular and diagnostic procedures in mycoplasmology. San Diego, CA: Academic press. 369-380.
-
(1995)
Molecular and diagnostic procedures in mycoplasmology
, pp. 369-380
-
-
Schneider, B.1
Seemüller, E.2
Smart, C.D.3
Kirkpatrick, B.C.4
-
9
-
-
0029808092
-
Sequence heterogeneity in the two 16S rRNA genes of Phormium yellow leaf phytoplasma
-
Liefting LW, Andersen MT, Beever RE, Gardner RC, Forster RL, (1996) Sequence heterogeneity in the two 16S rRNA genes of Phormium yellow leaf phytoplasma. Appl Environ Microbiol 62: 3133-3139.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3133-3139
-
-
Liefting, L.W.1
Andersen, M.T.2
Beever, R.E.3
Gardner, R.C.4
Forster, R.L.5
-
10
-
-
0033803611
-
Classification of aster yellows-group phytoplasmas based on combined analyses of rRNA and tuf gene sequences
-
Marcone C, Lee I-M, Davis RE, Ragozzino A, Seemüller E, (2000) Classification of aster yellows-group phytoplasmas based on combined analyses of rRNA and tuf gene sequences. Int J Syst Evol Microbiol 50: 1703-1713.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 1703-1713
-
-
Marcone, C.1
Lee, I.-M.2
Davis, R.E.3
Ragozzino, A.4
Seemüller, E.5
-
11
-
-
0037221918
-
Variability and functional role of chromosomal sequences in 16SrI-B subgroup phytoplasmas including aster yellows and related strains
-
Botti S, Bertaccini A, (2003) Variability and functional role of chromosomal sequences in 16SrI-B subgroup phytoplasmas including aster yellows and related strains. J Appl Microbiol 94: 103-110.
-
(2003)
J Appl Microbiol
, vol.94
, pp. 103-110
-
-
Botti, S.1
Bertaccini, A.2
-
12
-
-
33644751610
-
SecY gene sequence analysis for finer differentiation of diverse strains in the aster yellows phytoplasma group
-
Lee I-M, Zhao Y, Bottner KD, (2006) SecY gene sequence analysis for finer differentiation of diverse strains in the aster yellows phytoplasma group. Mol Cell Probes 20: 87-91.
-
(2006)
Mol Cell Probes
, vol.20
, pp. 87-91
-
-
Lee, I.-M.1
Zhao, Y.2
Bottner, K.D.3
-
13
-
-
80054862880
-
The use of groEL gene in characterisation of aster yellows phytoplasmas in field collected samples
-
Mitrović J, Contaldo N, Paltrinieri S, Meja JF, Mori N, et al. (2011) The use of groEL gene in characterisation of aster yellows phytoplasmas in field collected samples. Bull Insectology 64: S17-S18.
-
(2011)
Bull Insectology
, vol.64
-
-
Mitrović, J.1
Contaldo, N.2
Paltrinieri, S.3
Meja, J.F.4
Mori, N.5
-
14
-
-
34250827880
-
Multilocus sequence typing confirms the close genetic interrelatedness of three distinct flavescence dorée phytoplasma strain clusters and group 16SrV phytoplasmas infecting grapevine and alder in Europe
-
Arnaud G, Malembic-Maher S, Salar P, Bonnet P, Maixner M, et al. (2007) Multilocus sequence typing confirms the close genetic interrelatedness of three distinct flavescence dorée phytoplasma strain clusters and group 16SrV phytoplasmas infecting grapevine and alder in Europe. Appl Environ Microbiol 73: 4001-4010.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 4001-4010
-
-
Arnaud, G.1
Malembic-Maher, S.2
Salar, P.3
Bonnet, P.4
Maixner, M.5
-
15
-
-
0036598014
-
Genetic variability among Flavescence dorée phytoplasmas from different origins in Italy and France
-
Martini A, Botti S, Marcone C, Marzachì C, Casati P, et al. (2002) Genetic variability among Flavescence dorée phytoplasmas from different origins in Italy and France. Mol Cell Probes 16: 197-208.
-
(2002)
Mol Cell Probes
, vol.16
, pp. 197-208
-
-
Martini, A.1
Botti, S.2
Marcone, C.3
Marzachì, C.4
Casati, P.5
-
16
-
-
13844298115
-
Genetic variation in 'Candidatus Phytoplasma australiense
-
Streten C, Gibb KS, (2005) Genetic variation in 'Candidatus Phytoplasma australiense'. Plant Pathol 54: 8-14.
-
(2005)
Plant Pathol
, vol.54
, pp. 8-14
-
-
Streten, C.1
Gibb, K.S.2
-
17
-
-
34848830241
-
Ribosomal protein gene-based phylogeny for finer differentiation and classification of phytoplasmas
-
Martini M, Lee I-M, Bottner KD, Zhao Y, Botti S, et al. (2007) Ribosomal protein gene-based phylogeny for finer differentiation and classification of phytoplasmas. Int J Syst Evol Microbiol 57: 2037-2051.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 2037-2051
-
-
Martini, M.1
Lee, I.-M.2
Bottner, K.D.3
Zhao, Y.4
Botti, S.5
-
18
-
-
78650050391
-
Phylogenetic analysis and delineation of phytoplasmas based on secY gene sequences
-
Lee I-M, Bottner-Parker KD, Zhao Y, Davis RE, Harrison NA, (2010) Phylogenetic analysis and delineation of phytoplasmas based on secY gene sequences. Int J Syst Evol Microbiol 60: 2887-2897.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 2887-2897
-
-
Lee, I.-M.1
Bottner-Parker, K.D.2
Zhao, Y.3
Davis, R.E.4
Harrison, N.A.5
-
19
-
-
54749150626
-
Phytoplasma phylogenetics based on analysis of secA and 23S rRNA gene sequences for improved resolution of candidate species of 'Candidatus Phytoplasma
-
Hodgetts J, Boonham N, Mumford R, Harrison N, Dickinson M, (2008) Phytoplasma phylogenetics based on analysis of secA and 23S rRNA gene sequences for improved resolution of candidate species of 'Candidatus Phytoplasma'. Int J Syst Evol Microbiol 58: 1826-1837.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1826-1837
-
-
Hodgetts, J.1
Boonham, N.2
Mumford, R.3
Harrison, N.4
Dickinson, M.5
-
20
-
-
0037423543
-
Biological identifications through DNA barcodes
-
Hebert PDN, Cywinska A, Ball SL, deWaard JR, (2003) Biological identifications through DNA barcodes. Proc Biol Sci 270: 313-321.
-
(2003)
Proc Biol Sci
, vol.270
, pp. 313-321
-
-
Hebert, P.D.N.1
Cywinska, A.2
Ball, S.L.3
deWaard, J.R.4
-
21
-
-
0344430173
-
DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you
-
Besansky NJ, Severson DW, Ferdig MT, (2003) DNA barcoding of parasites and invertebrate disease vectors: what you don't know can hurt you. Trends Parasitol 19: 545-546.
-
(2003)
Trends Parasitol
, vol.19
, pp. 545-546
-
-
Besansky, N.J.1
Severson, D.W.2
Ferdig, M.T.3
-
22
-
-
77955014461
-
DNA barcoding: a six-question tour to improve users' awareness about the method
-
Casiraghi M, Labra M, Ferri E, Galimberti A, De Mattia F, (2010) DNA barcoding: a six-question tour to improve users' awareness about the method. Brief Bioinform 11: 440-453.
-
(2010)
Brief Bioinform
, vol.11
, pp. 440-453
-
-
Casiraghi, M.1
Labra, M.2
Ferri, E.3
Galimberti, A.4
De Mattia, F.5
-
23
-
-
0042531561
-
Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species
-
Hebert PDN, Ratnasingham S, deWaard JR, (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc Biol Sci 270Suppl: S96-S99.
-
(2003)
Proc Biol Sci
, vol.270
-
-
Hebert, P.D.N.1
Ratnasingham, S.2
deWaard, J.R.3
-
24
-
-
6944255373
-
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
-
Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W, (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci U S A 101: 14812-14817.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 14812-14817
-
-
Hebert, P.D.N.1
Penton, E.H.2
Burns, J.M.3
Janzen, D.H.4
Hallwachs, W.5
-
25
-
-
20444366492
-
Use of DNA barcodes to identify flowering plants
-
Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH, (2005) Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci U S A 102: 8369-8374.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 8369-8374
-
-
Kress, W.J.1
Wurdack, K.J.2
Zimmer, E.A.3
Weigt, L.A.4
Janzen, D.H.5
-
26
-
-
77955033164
-
Barcoding life to conserve biological diversity: beyond the taxonomic imperative
-
Vernooy R, Haribabu E, Muller MR, Vogel JH, Hebert PDN, et al. (2010) Barcoding life to conserve biological diversity: beyond the taxonomic imperative. PLoS Biol 8: e1000417.
-
(2010)
PLoS Biol
, vol.8
-
-
Vernooy, R.1
Haribabu, E.2
Muller, M.R.3
Vogel, J.H.4
Hebert, P.D.N.5
-
27
-
-
77951242010
-
QBOL: a new EU project focusing on DNA barcoding of quarantine organisms
-
Bonants P, Groenewald E, Rasplus JY, Maes M, de Vos P, et al. (2010) QBOL: a new EU project focusing on DNA barcoding of quarantine organisms. EPPO Bulletin 40: 30-33.
-
(2010)
EPPO Bulletin
, vol.40
, pp. 30-33
-
-
Bonants, P.1
Groenewald, E.2
Rasplus, J.Y.3
Maes, M.4
de Vos, P.5
-
28
-
-
9144247750
-
Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma
-
Oshima K, Kakizawa S, Nishigawa H, Jung HY, Wei W, et al. (2004) Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. Nat Genet 36: 27-29.
-
(2004)
Nat Genet
, vol.36
, pp. 27-29
-
-
Oshima, K.1
Kakizawa, S.2
Nishigawa, H.3
Jung, H.Y.4
Wei, W.5
-
29
-
-
33644847226
-
Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts
-
Bai X, Zhang J, Ewing A, Miller SA, Radek AJ, et al. (2006) Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol 188: 3682-3696.
-
(2006)
J Bacteriol
, vol.188
, pp. 3682-3696
-
-
Bai, X.1
Zhang, J.2
Ewing, A.3
Miller, S.A.4
Radek, A.J.5
-
30
-
-
44349099865
-
Comparative genome analysis of 'Candidatus Phytoplasma australiense' (subgroup tuf-Australia I; rp-A) and 'Ca. Phytoplasma asteris' strains OY-M and AY-WB
-
Tran-Nguyen LTT, Kube M, Schneider B, Reinhardt R, Gibb KS, (2008) Comparative genome analysis of 'Candidatus Phytoplasma australiense' (subgroup tuf-Australia I; rp-A) and 'Ca. Phytoplasma asteris' strains OY-M and AY-WB. J Bacteriol 190: 3979-3991.
-
(2008)
J Bacteriol
, vol.190
, pp. 3979-3991
-
-
Tran-Nguyen, L.T.T.1
Kube, M.2
Schneider, B.3
Reinhardt, R.4
Gibb, K.S.5
-
31
-
-
47249123775
-
The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali
-
Kube M, Schneider B, Kuhl H, Dandekar T, Heitmann K, et al. (2008) The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali'. BMC Genomics 9: 306.
-
(2008)
BMC Genomics
, vol.9
, pp. 306
-
-
Kube, M.1
Schneider, B.2
Kuhl, H.3
Dandekar, T.4
Heitmann, K.5
-
32
-
-
85022148150
-
-
Bertaccini A (2010) Phytoplasma Collection. Available: http://ipwgnet.org/doc/phyto_collection/collection-august2010.pdf. Accessed 24 February 2012.
-
(2010)
Phytoplasma Collection
-
-
Bertaccini, A.1
-
33
-
-
0027138985
-
Molecular detection of diverse mycoplasmalike organisms (MLOs) associated with grapevine yellows and their classification with Aster Yellows, X-disease, and Elm Yellows MLOs
-
Prince JP, Davis RE, Wolf TK, Lee I-M, Mogen BD, et al. (1993) Molecular detection of diverse mycoplasmalike organisms (MLOs) associated with grapevine yellows and their classification with Aster Yellows, X-disease, and Elm Yellows MLOs. Phytopathology 83: 1130-1137.
-
(1993)
Phytopathology
, vol.83
, pp. 1130-1137
-
-
Prince, J.P.1
Davis, R.E.2
Wolf, T.K.3
Lee, I.-M.4
Mogen, B.D.5
-
34
-
-
0029104911
-
Studies on sweet potato little-leaf phytoplasma detected in sweet potato and other plant species growing in Northern Australia
-
Gibb KS, Padovan AC, Mogen BD, (1995) Studies on sweet potato little-leaf phytoplasma detected in sweet potato and other plant species growing in Northern Australia. Mol Plant Pathol 85: 169-174.
-
(1995)
Mol Plant Pathol
, vol.85
, pp. 169-174
-
-
Gibb, K.S.1
Padovan, A.C.2
Mogen, B.D.3
-
35
-
-
0000621566
-
Ultrasensitive detection of phytoplasmas by nested-PCR assays using two universal primer pairs
-
Gundersen DE, Lee I-M, (1996) Ultrasensitive detection of phytoplasmas by nested-PCR assays using two universal primer pairs. Phytopathol Mediterr 35: 144-151.
-
(1996)
Phytopathol Mediterr
, vol.35
, pp. 144-151
-
-
Gundersen, D.E.1
Lee, I.-M.2
-
36
-
-
0023084055
-
Progressive sequence alignment as a prerequisite to correct phylogenetic trees
-
Feng DF, Doolittle RF, (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol 25: 351-360.
-
(1987)
J Mol Evol
, vol.25
, pp. 351-360
-
-
Feng, D.F.1
Doolittle, R.F.2
-
37
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
38
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
39
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J, (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
40
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
41
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura K, Nei M, (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526.
-
(1993)
Mol Biol Evol
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
42
-
-
0026711010
-
Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases
-
Tamura K, (1992) Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. Mol Biol Evol 9: 678-687.
-
(1992)
Mol Biol Evol
, vol.9
, pp. 678-687
-
-
Tamura, K.1
-
43
-
-
0036800964
-
Molecular identification of a new phytoplasma associated with alfalfa witches'-broom in Oman
-
Khan AJ, Botti S, Al-Subhi AM, Gundersen-Rindal DE, Bertaccini AF, (2002) Molecular identification of a new phytoplasma associated with alfalfa witches'-broom in Oman. Phytopathology 92: 1038-1047.
-
(2002)
Phytopathology
, vol.92
, pp. 1038-1047
-
-
Khan, A.J.1
Botti, S.2
Al-Subhi, A.M.3
Gundersen-Rindal, D.E.4
Bertaccini, A.F.5
|