-
1
-
-
37649019847
-
Measuring lymphocyte proliferation, survival and differentiation using CFSE time-series data
-
doi:10.1038/nprot.2007.297
-
Hawkins ED, Hommel M, Turner ML, Battye FL, Markham JF, Hodgkin PD. 2007 Measuring lymphocyte proliferation, survival and differentiation using CFSE time-series data. Nat. Protocol. 2, 2057-2067. (doi:10.1038/nprot.2007.297)
-
(2007)
Nat. Protocol.
, vol.2
, pp. 2057-2067
-
-
Hawkins, E.D.1
Hommel, M.2
Turner, M.L.3
Battye, F.L.4
Markham, J.F.5
Hodgkin, P.D.6
-
2
-
-
78649804169
-
Homeostatic turnover of virus-specific memory CD8 T cells occurs stochastically and is independent of CD4 T cell help
-
doi:10.4049/jimmunol.1001421
-
Choo DK, Murali-Krishna K, Anita R, Ahmed R. 2010 Homeostatic turnover of virus-specific memory CD8 T cells occurs stochastically and is independent of CD4 T cell help. J. Immunol. 185, 3436-3444. (doi:10.4049/jimmunol.1001421)
-
(2010)
J. Immunol.
, vol.185
, pp. 3436-3444
-
-
Choo, D.K.1
Murali-Krishna, K.2
Anita, R.3
Ahmed, R.4
-
3
-
-
17444390049
-
Quantifying cell turnover using CFSE data
-
doi:10.1016/j.jim.2005.01.011
-
Ganusov V, Pilyugin S, de Boer R, Murali-Krishna K, Ahmed R, Antia R. 2005 Quantifying cell turnover using CFSE data. J. Immunol. Methods 298, 183-200. (doi:10.1016/j.jim.2005.01.011)
-
(2005)
J. Immunol. Methods
, vol.298
, pp. 183-200
-
-
Ganusov, V.1
Pilyugin, S.2
De Boer, R.3
Murali-Krishna, K.4
Ahmed, R.5
Antia, R.6
-
4
-
-
33746869245
-
Estimating lymphocyte division and death rates from CFSE data
-
doi:10.1007/s11538-006-9094-8
-
De Boer R, Ganusov V, Milutinovic D, Hodgkin P, Perelson A. 2006 Estimating lymphocyte division and death rates from CFSE data. Bull. Math. Biol. 68, 1011-1031. (doi:10.1007/s11538-006-9094-8)
-
(2006)
Bull. Math. Biol.
, vol.68
, pp. 1011-1031
-
-
De Boer, R.1
Ganusov, V.2
Milutinovic, D.3
Hodgkin, P.4
Perelson, A.5
-
5
-
-
40749115606
-
Mathematical modeling reveals the biological program regulating lymphopenia-induced proliferation
-
Yates A, Saini M, Mathiot A, Seddon B. 2008 Mathematical modeling reveals the biological program regulating lymphopenia-induced proliferation. J. Immunol. 180, 1414-1422.
-
(2008)
J. Immunol.
, vol.180
, pp. 1414-1422
-
-
Yates, A.1
Saini, M.2
Mathiot, A.3
Seddon, B.4
-
6
-
-
34548810955
-
+ T cell populations by affecting cell death: Insights from modeling CFSE data
-
+ T cell populations by affecting cell death: insights from modeling CFSE data. J. Immunol. 179, 950-957.
-
(2007)
J. Immunol.
, vol.179
, pp. 950-957
-
-
Ganusov, V.1
Milutinovic, D.2
De Boer, R.3
-
7
-
-
80054833233
-
A new model for the estimation of cell proliferation dynamics using CFSE data
-
doi:10.1016/j.jim.2011.08.014
-
Banks HT et al. 2011 A new model for the estimation of cell proliferation dynamics using CFSE data. J. Immunol. Methods 373, 143-160. (doi:10.1016/j.jim.2011.08.014)
-
(2011)
J. Immunol. Methods
, vol.373
, pp. 143-160
-
-
Banks, H.T.1
-
8
-
-
77953670482
-
An age-dependent branching process model for the analysis of CFSE-labeling experiments
-
doi:10.1186/1745-6150-5-41
-
Hyrien O, Chen R, Zand MS. 2010 An age-dependent branching process model for the analysis of CFSE-labeling experiments. Biol. Direct. 5, 41. (doi:10.1186/1745-6150-5-41)
-
(2010)
Biol. Direct.
, vol.5
, pp. 41
-
-
Hyrien, O.1
Chen, R.2
Zand, M.S.3
-
9
-
-
70349929800
-
Distributed parameter identification for a label-structured cell population dynamics model using CFSE histogram time-series data
-
doi:10.1007/s00285-008-0244-5
-
Luzyanina T, Roose D, Bocharov G. 2009 Distributed parameter identification for a label-structured cell population dynamics model using CFSE histogram time-series data. J. Math. Biol. 59, 581-603. (doi:10.1007/s00285-008- 0244-5)
-
(2009)
J. Math. Biol.
, vol.59
, pp. 581-603
-
-
Luzyanina, T.1
Roose, D.2
Bocharov, G.3
-
10
-
-
84856257079
-
Evaluation of multitype mathematical models for CFSE-labeling experiment data
-
doi:10.1007/s11538-011-9668-y
-
Miao H, Jin X, Perelson AS, Wu H. 2012 Evaluation of multitype mathematical models for CFSE-labeling experiment data. Bull. Math. Biol. 74, 300-326. (doi:10.1007/s11538-011-9668-y)
-
(2012)
Bull. Math. Biol.
, vol.74
, pp. 300-326
-
-
Miao, H.1
Jin, X.2
Perelson, A.S.3
Wu, H.4
-
11
-
-
0028267677
-
Turnover of naive- and memory-phenotype T cells
-
doi:10.1084/jem.179.4.1127
-
Tough DF, Sprent J. 1994 Turnover of naive- and memory-phenotype T cells. J. Exp. Med. 179, 1127-1135. (doi:10.1084/jem.179.4.1127)
-
(1994)
J. Exp. Med.
, vol.179
, pp. 1127-1135
-
-
Tough, D.F.1
Sprent, J.2
-
12
-
-
0032472869
-
Lifespan of γ/δ T cells
-
doi:10.1084/jem.187.3.357
-
Tough DF, Sprent J. 1998 Lifespan of γ/δ T cells. J. Exp. Med. 187, 357-365. (doi:10.1084/jem.187.3.357)
-
(1998)
J. Exp. Med.
, vol.187
, pp. 357-365
-
-
Tough, D.F.1
Sprent, J.2
-
13
-
-
0032549086
-
Rapid turnover of T lymphocytes in SIV-infected rhesus macaques
-
doi:10.1126/science.279.5354.1223
-
Mohri H, Bonhoeffer S, Monard S, Perelson AS, Ho DD. 1998 Rapid turnover of T lymphocytes in SIV-infected rhesus macaques. Science 279, 1223-1227. (doi:10.1126/science.279.5354.1223)
-
(1998)
Science
, vol.279
, pp. 1223-1227
-
-
Mohri, H.1
Bonhoeffer, S.2
Monard, S.3
Perelson, A.S.4
Ho, D.D.5
-
14
-
-
9244220630
-
+ memory T cells in rapidly progressive simian immunodeficiency virus infection
-
doi:10.1084/jem.20041049
-
+ memory T cells in rapidly progressive simian immunodeficiency virus infection. J. Exp. Med. 200, 1299-1314. (doi:10.1084/jem.20041049)
-
(2004)
J. Exp. Med.
, vol.200
, pp. 1299-1314
-
-
Picker, L.1
-
15
-
-
34548413609
-
+ effector memory insufficiency and overt disease in chronic SIV infection
-
doi:10.1084/jem.20070567
-
+ effector memory insufficiency and overt disease in chronic SIV infection. J. Exp. Med. 204, 2171-2185. (doi:10.1084/jem.20070567)
-
(2007)
J. Exp. Med.
, vol.204
, pp. 2171-2185
-
-
Okoye, A.1
-
16
-
-
12944331410
-
+ T cell turnover in HIV-infected patients
-
doi:10.1073/pnas.250472097
-
+ T cell turnover in HIV-infected patients. Proc. Natl Acad. Sci. USA 97, 13 778-13 783.(doi:10.1073/pnas.250472097)
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 13778-13783
-
-
Lempicki, R.A.1
-
17
-
-
0035905463
-
Identification of dynamically distinct subpopulations of T lymphocytes that are differentially affected by HIV
-
doi:10.1084/jem.194.12.1731
-
Kovacs JA et al. 2001 Identification of dynamically distinct subpopulations of T lymphocytes that are differentially affected by HIV. J. Exp. Med. 194, 1731-1741. (doi:10.1084/jem.194.12.1731)
-
(2001)
J. Exp. Med.
, vol.194
, pp. 1731-1741
-
-
Kovacs, J.A.1
-
18
-
-
23644439060
-
+ T lymphocytes by intermittent IL-2 therapy in HIV-infected patients
-
doi:10.1172/JCI23196
-
+ T lymphocytes by intermittent IL-2 therapy in HIV-infected patients. J. Clin. Invest. 115, 2139-2148. (doi:10.1172/JCI23196)
-
(2005)
J. Clin. Invest.
, vol.115
, pp. 2139-2148
-
-
Kovacs, J.A.1
-
19
-
-
33644748244
-
Naive T-cell dynamics in human immunodeficiency virus type 1 infection: Effects of highly active antiretroviral therapy provide insights into the mechanisms of naive T-cell depletion
-
doi:10.1128/JVI.80.6.2665-2674.2006
-
Di Mascio M et al. 2006 Naive T-cell dynamics in human immunodeficiency virus type 1 infection: effects of highly active antiretroviral therapy provide insights into the mechanisms of naive T-cell depletion. J. Virol. 80, 2665-2674. (doi:10.1128/JVI.80.6.2665-2674.2006)
-
(2006)
J. Virol.
, vol.80
, pp. 2665-2674
-
-
Di Mascio, M.1
-
20
-
-
79960453203
-
Differential effects of HIV viral load and CD4 counts on proliferation of naive and memory CD4 and CD8 T lymphocytes
-
doi:10.1182/blood-2011-02-335174
-
Srinivasula S et al. 2011 Differential effects of HIV viral load and CD4 counts on proliferation of naive and memory CD4 and CD8 T lymphocytes. Blood 118, 262-270. (doi:10.1182/blood-2011-02-335174)
-
(2011)
Blood
, vol.118
, pp. 262-270
-
-
Srinivasula, S.1
-
21
-
-
56549128268
-
Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair
-
doi:10.1016/j.cell.2008.10.048
-
Wilson A et al. 2008 Hematopoietic stem cells reversibly switch from dormancy to self-renewal during homeostasis and repair. Cell 135, 1118-1129. (doi:10.1016/j.cell.2008.10.048)
-
(2008)
Cell
, vol.135
, pp. 1118-1129
-
-
Wilson, A.1
-
22
-
-
79951698622
-
Dynamic variation in cycling of hematopoietic stem cells in steady state and inflammation
-
doi:10.1084/jem.20101643
-
Takizawa H, Regoes RR, Boddupalli CS, Bonhoeffer S, Manz MG. 2011 Dynamic variation in cycling of hematopoietic stem cells in steady state and inflammation. J. Exp. Med. 208, 273-284. (doi:10.1084/jem.20101643)
-
(2011)
J. Exp. Med.
, vol.208
, pp. 273-284
-
-
Takizawa, H.1
Regoes, R.R.2
Boddupalli, C.S.3
Bonhoeffer, S.4
Manz, M.G.5
-
23
-
-
47249143671
-
Kinetics of in vivo proliferation and death of memory and naive CD8 T cells: Parameter estimation based on 5-bromo-2′-deoxyuridine incorporation in spleen, lymph nodes, and bone marrow
-
Parretta E, Cassese G, Santoni A, Guardiola J, Vecchio A, Di Rosa F. 2008 Kinetics of in vivo proliferation and death of memory and naive CD8 T cells: parameter estimation based on 5-bromo-2′-deoxyuridine incorporation in spleen, lymph nodes, and bone marrow. J. Immunol. 180, 7230-7239.
-
(2008)
J. Immunol.
, vol.180
, pp. 7230-7239
-
-
Parretta, E.1
Cassese, G.2
Santoni, A.3
Guardiola, J.4
Vecchio, A.5
Di Rosa, F.6
-
24
-
-
34548601610
-
Haematopoietic stem cells do not asymmetrically segregate chromosomes or retain BrdU
-
doi:10.1038/nature06115
-
Kiel MJ, He S, Ashkenazi R, Gentry SN, Teta M, Kushner JA, Jackson TL, Morrison SJ. 2007 Haematopoietic stem cells do not asymmetrically segregate chromosomes or retain BrdU. Nature 449, 238-242. (doi:10.1038/nature06115)
-
(2007)
Nature
, vol.449
, pp. 238-242
-
-
Kiel, M.J.1
He, S.2
Ashkenazi, R.3
Gentry, S.N.4
Teta, M.5
Kushner, J.A.6
Jackson, T.L.7
Morrison, S.J.8
-
25
-
-
0343527207
-
Quantification of cell turnover kinetics using 5-bromo-2′- deoxyuridine
-
Bonhoeffer S, Mohri H, Ho D, Perelson AS. 2000 Quantification of cell turnover kinetics using 5-bromo-2′-deoxyuridine. J. Immunol. 164, 5049-5054.
-
(2000)
J. Immunol.
, vol.164
, pp. 5049-5054
-
-
Bonhoeffer, S.1
Mohri, H.2
Ho, D.3
Perelson, A.S.4
-
26
-
-
0037461298
-
Estimating average cellular turnover from BrdU measurements
-
doi:10.1098/rspb.2002.2316
-
De Boer RJ, Mohri H, Ho DD, Perelson AS. 2003 Estimating average cellular turnover from BrdU measurements. Proc. R. Soc. Lond. B 270, 849-858. (doi:10.1098/rspb.2002.2316)
-
(2003)
Proc. R. Soc. Lond. B
, vol.270
, pp. 849-858
-
-
De Boer, R.J.1
Mohri, H.2
Ho, D.D.3
Perelson, A.S.4
-
27
-
-
0037372555
-
Turnover rates of B cells, T cells, and NK cells in simian immunodeficiency virus-infected and uninfected rhesus macaques
-
De Boer RJ, Mohri H, Ho DD, Perelson AS. 2003 Turnover rates of B cells, T cells, and NK cells in simian immunodeficiency virus-infected and uninfected rhesus macaques. J. Immunol. 170, 2479-2487.
-
(2003)
J. Immunol.
, vol.170
, pp. 2479-2487
-
-
De Boer, R.J.1
Mohri, H.2
Ho, D.D.3
Perelson, A.S.4
-
28
-
-
0000837725
-
T cell turnover in SIV infection
-
doi:10.1126/science.284.5414.555a
-
Grossman Z, Herberman RB, Dimitrov DS. 1999 T cell turnover in SIV infection. Science 284, 555. (doi:10.1126/science.284.5414.555a)
-
(1999)
Science
, vol.284
, pp. 555
-
-
Grossman, Z.1
Herberman, R.B.2
Dimitrov, D.S.3
-
29
-
-
0037162473
-
Increased cell proliferation, but not reduced cell death, induces lymphocytosis in bovine leukemia virus-infected sheep
-
doi:10.1073/pnas.142100999
-
Debacq C, Asquith B, Kerkhofs P, Portetelle D, Burny A, Kettmann R, Willems L. 2002 Increased cell proliferation, but not reduced cell death, induces lymphocytosis in bovine leukemia virus-infected sheep. Proc. Natl Acad. Sci. USA 99, 10 048-10 053. (doi:10.1073/pnas.142100999)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 10048-10053
-
-
Debacq, C.1
Asquith, B.2
Kerkhofs, P.3
Portetelle, D.4
Burny, A.5
Kettmann, R.6
Willems, L.7
-
30
-
-
0036897678
-
Lymphocyte kinetics: The interpretation of labelling data
-
doi:10.1016/S1471-4906(02)02337-2
-
Asquith B, Debacq C, Macallan DC, Willems L, Bangham CR. 2002 Lymphocyte kinetics: the interpretation of labelling data. Trends Immunol. 23, 596-601. (doi:10.1016/S1471-4906(02)02337-2)
-
(2002)
Trends Immunol.
, vol.23
, pp. 596-601
-
-
Asquith, B.1
Debacq, C.2
Macallan, D.C.3
Willems, L.4
Bangham, C.R.5
-
31
-
-
0000837725
-
T cell turnover in SIV infection
-
doi:10.1126/science.284.5414.555a
-
Rouzine IM, Coffin JM. 1999 T cell turnover in SIV infection. Science 284, 555. (doi:10.1126/science.284.5414.555a)
-
(1999)
Science
, vol.284
, pp. 555
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
32
-
-
68249114199
-
Stem cell proliferation and quiescence: Two sides of the same coin
-
doi:10.1371/journal.pcbi.1000447
-
Glauche I, Moore K, Thielecke L, Horn K, Loeffler M, Roeder I. 2009 Stem cell proliferation and quiescence: two sides of the same coin. PLoS Comput. Biol. 5, e1000447. (doi:10.1371/journal.pcbi.1000447)
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Glauche, I.1
Moore, K.2
Thielecke, L.3
Horn, K.4
Loeffler, M.5
Roeder, I.6
-
33
-
-
0142186693
-
The rescaling method for quantifying the turnover of cell populations
-
doi:10.1016/S0022-5193(03)00245-5
-
Pilyugin S, Ganusov V, Murali-Krishna K, Ahmed R, Antia R. 2003 The rescaling method for quantifying the turnover of cell populations. J. Theor. Biol. 225, 275-283. (doi:10.1016/S0022-5193(03)00245-5)
-
(2003)
J. Theor. Biol.
, vol.225
, pp. 275-283
-
-
Pilyugin, S.1
Ganusov, V.2
Murali-Krishna, K.3
Ahmed, R.4
Antia, R.5
-
34
-
-
77649194239
-
Explicit kinetic heterogeneity: Mathematical models for interpretation of deuterium labeling of heterogeneous cell populations
-
doi:10.1371/journal.pcbi.1000666
-
Ganusov VV, Borghans JA, De Boer RJ. 2010 Explicit kinetic heterogeneity: mathematical models for interpretation of deuterium labeling of heterogeneous cell populations. PLoS Comput. Biol. 6, e1000666. (doi:10.1371/journal.pcbi. 1000666)
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Ganusov, V.V.1
Borghans, J.A.2
De Boer, R.J.3
-
36
-
-
84864598576
-
Modelling deuterium labelling of lymphocytes with temporal and/or kinetic heterogeneity
-
doi:10.1098/rsif.2012.0149
-
De Boer RJ, Perelson AS, Ribeiro R. 2012 Modelling deuterium labelling of lymphocytes with temporal and/or kinetic heterogeneity. J. R. Soc. Interface 9, 2191-2200. (doi:10.1098/rsif.2012.0149)
-
(2012)
J. R. Soc. Interface
, vol.9
, pp. 2191-2200
-
-
De Boer, R.J.1
Perelson, A.S.2
Ribeiro, R.3
-
37
-
-
0042476384
-
Measurement and modeling of human T cell kinetics
-
doi:10.1002/eji.200323763
-
Macallan DC et al. 2003 Measurement and modeling of human T cell kinetics. Eur. J. Immunol. 33, 2316-2326. (doi:10.1002/eji.200323763)
-
(2003)
Eur. J. Immunol.
, vol.33
, pp. 2316-2326
-
-
Macallan, D.C.1
-
38
-
-
0035169609
-
Increased turnover of T lymphocytes in HIV-1 infection and its reduction by antiretroviral therapy
-
doi:10.1084/jem.194.9.1277
-
Mohri H. et al. 2001 Increased turnover of T lymphocytes in HIV-1 infection and its reduction by antiretroviral therapy. J. Exp. Med. 194, 1277-1288. (doi:10.1084/jem.194.9.1277)
-
(2001)
J. Exp. Med.
, vol.194
, pp. 1277-1288
-
-
Mohri, H.1
-
39
-
-
84859977092
-
Division-linked generation of death-intermediates regulates the numerical stability of memory CD8 T cells
-
doi:10.1073/pnas.1118868109
-
Nolz JC, Rai D, Badovinac VP, Harty JT. 2012 Division-linked generation of death-intermediates regulates the numerical stability of memory CD8 T cells. Proc. Natl Acad Sci. USA 109, 6199-6204. (doi:10.1073/pnas.1118868109)
-
(2012)
Proc. Natl Acad Sci. USA
, vol.109
, pp. 6199-6204
-
-
Nolz, J.C.1
Rai, D.2
Badovinac, V.P.3
Harty, J.T.4
|