Comparative study between Next Generation Sequencing Technique and identification of microarray for Species Identification within blended food products

Biochip Journal

Volumn 6, Issue 4, 2012, Pages 354-361

  Park, Jung Youn ^a   Lee, Seung Yong ^b   An, Cheul Min ^a   Kang, Jung Ha ^a   Kim, Ji Hoon ^b   Chai, Jin Choul ^b   Chen, JiaYu ^b   Kang, Jin Seok ^b   Ahn, Jeong Jin ^b   Lee, Young Seek ^b   Hwang, Seung Yong ^b  

^a National Fisheries Research and Development Institute (NFRDI)   (South Korea)

^b GenoCheck Co Ltd   (South Korea)

Author keywords

Blended food products; Fish cake; Microarray; Next Generation Sequencing (NGS); Species identification

Indexed keywords

ACCURATE ANALYSIS; BIO-MEDICAL; BIOLOGICAL RESOURCES; CHEMICAL SPECIES; COMPARATIVE STUDIES; DNA ANALYSIS; DNA SEQUENCING; EARLY DIAGNOSIS; ELEMENT ANALYSIS; ELEMENTAL COMPOSITIONS; EPIGENOMICS; FISH SPECIES; GENE ANALYSIS; GENETIC INFORMATION; GENOME RESEARCH; GENOMICS; HEALTH BENEFITS; HEALTH CONSCIOUS; HUMAN GENES; INCREASED PRODUCTIVITY; MULTIFACETED ANALYSIS; NEXT GENERATION SEQUENCING (NGS); RESEARCH GROUPS; SEQUENCE DATA; SEQUENCING METHOD; SPECIES IDENTIFICATION;

BIOLOGICAL MATERIALS; DIAGNOSIS; DNA SEQUENCES; FISH; GENES; MEATS; MICROARRAYS; RESEARCH;

CHEMICAL ANALYSIS;

ARTICLE; COMPARATIVE STUDY; COST BENEFIT ANALYSIS; DATA ANALYSIS; DNA DETERMINATION; DNA SEQUENCE; EPIGENETICS; FOOD ANALYSIS; FOOD BIOTECHNOLOGY; FOOD COMPOSITION; FOOD INDUSTRY; FOOD ORGANISM; GENETIC ANALYSIS; GENOMICS; MICROARRAY ANALYSIS; NEXT GENERATION SEQUENCING; NONHUMAN; SEQUENCE ANALYSIS; SPECIES IDENTIFICATION;

EID: 84871130498     PISSN: 19760280     EISSN: 20927843     Source Type: Journal    
DOI: 10.1007/s13206-012-6407-x     Document Type: Article

References (22)

1. Devriese, L., Pot, B. & Collins, M. Phenotypic identification of the genus Enterococcus and differentiation of phylogenetically distinct enterococcal species and species groups. J. Appl. Microbiol. 75, 399-408 (2008).
2. Kim, J. H. et al. Species identification of filefishes (Monacanthidae) using DNA microarray in Korean marketplace. BioChip J. 5, 229-235 (2011).
3. Clare, E. L., Lim, B. K., Engstrom, M. D., Eger, J. L. & Hebert, P. D. N. DNA barcoding of Neotropical bats: species identification and discovery within Guyana. Molecular Ecology Notes7, 184-190 (2007).
4. Chang, H. C. et al. Species-level identification of isolates of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex by sequence analysis of the 16S-23S rRNA gene spacer region. J. Clin. Microbiol. 43, 1632-1639 (2005).
5. Reis-Filho, J. S. Next-generation sequencing. Breast Cancer Res. 11, S12 (2009).
6. Mardis, E. R. The impact of next-generation sequencing technology on genetics. Trends Genet. 24, 133 (2008).
7. Morozova, O. & Marra, M. A. Applications of nextgeneration sequencing technologies in functional genomics. Genomics92, 255-264 (2008).
8. Schuster, S. C. Next-generation sequencing transforms today's biology. Nature200 (2007).
9. Metzker, M. L. Sequencing technologies-the next generation. Nat. Rev. Genet. 11, 31-46 (2009).
10. Mardis, E. R. Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet. 9, 387-402 (2008).
11. Voelkerding, K. V., Dames, S. A. & Durtschi, J. D. Next-generation sequencing: from basic research to diagnostics. Clin. Chem. 55, 641-658 (2009).
12. Yang, Y. H. & Speed, T. Design issues for cDNA microarray experiments. Nat. Rev. Genet. 3, 579-588 (2002).
13. Wang, D. et al. Microarray-based detection and genotyping of viral pathogens. Proc. Natl. Acad. Sci. U. S. A. 99, 15687-15692 (2002).
14. Irizarry, R. A. et al. Multiple-laboratory comparison of microarray platforms. Nat. Methods2, 345-350 (2005).
15. Colombo, A. P. V. et al. Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray. J. Periodont. 80, 1421-1432 (2009).
16. Jayapal, M. & Melendez, A. J. DNA microarray technology for target identification and validation. Clin. Exp. Pharmacol. Physiol. 33, 496-503 (2006).
17. Shaw, K. J. & Morrow, B. J. Transcriptional profiling and drug discovery. Curr. Opin. Pharmacol. 3, 508-512 (2003).
18. McCarty, C. A., Wilke, R. A., Giampietro, P. F., Wesbrook, S. D. & Caldwell, M. D. Marshfield Clinic Personalized Medicine Research Project (PMRP): design, methods and recruitment for a large population-based biobank. Pers. Med. 2, 49-79 (2005).
19. Hamburg, M. A. & Collins, F. S. The path to personalized medicine. N. Engl. J. Med. 363, 301-304 (2010).
20. Jain, K. Applications of biochips: From diagnostics to personalized medicine. Curr. Opin. Drug Discov. Dev. 7, 285-289 (2004).
21. Ng, P. C., Murray, S. S., Levy, S. & Venter, J. C. An agenda for personalized medicine. Nature461, 724-726 (2009).
22. Roden, D. M. et al. Development of a large-scale deidentified DNA biobank to enable personalized medicine. Clin. Pharmacol. Ther. 84, 362-369 (2008).