-
1
-
-
79951678159
-
Nucleases: Diversity of structure, function and mechanism
-
Yang, W. (2011) Nucleases: diversity of structure, function and mechanism. Q. Rev. Biophys. 44, 1-93
-
(2011)
Q. Rev. Biophys.
, vol.44
, pp. 1-93
-
-
Yang, W.1
-
2
-
-
0029616338
-
Calf 5′ to 3′ exo/endonuclease must slide from a 5′ end of the substrate to perform structure-specific cleavage
-
Murante, R. S., Rust, L., and Bambara, R. A. (1995) Calf 5′ to 3′ exo/endonuclease must slide from a 5′ end of the substrate to perform structure-specific cleavage. J. Biol. Chem. 270, 30377-30383
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 30377-30383
-
-
Murante, R.S.1
Rust, L.2
Bambara, R.A.3
-
3
-
-
79953894934
-
Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily
-
Tsutakawa, S. E., Classen, S., Chapados, B. R., Arvai, A. S., Finger, L. D., Guenther, G., Tomlinson, C. G., Thompson, P., Sarker, A. H., Shen, B., Cooper, P. K., Grasby, J. A., and Tainer, J. A. (2011) Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily. Cell 145, 198-211
-
(2011)
Cell
, vol.145
, pp. 198-211
-
-
Tsutakawa, S.E.1
Classen, S.2
Chapados, B.R.3
Arvai, A.S.4
Finger, L.D.5
Guenther, G.6
Tomlinson, C.G.7
Thompson, P.8
Sarker, A.H.9
Shen, B.10
Cooper, P.K.11
Grasby, J.A.12
Tainer, J.A.13
-
4
-
-
47749128072
-
Role for DNA polymerase κ in the processing of N2-N2-guanine inter-strand cross-links
-
Minko, I. G., Harbut, M. B., Kozekov, I. D., Kozekova, A., Jakobs, P. M., Olson, S. B., Moses, R. E., Harris, T. M., Rizzo, C. J., and Lloyd, R. S. (2008) Role for DNA polymerase κ in the processing of N2-N2-guanine inter-strand cross-links. J. Biol. Chem. 283, 17075-17082
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 17075-17082
-
-
Minko, I.G.1
Harbut, M.B.2
Kozekov, I.D.3
Kozekova, A.4
Jakobs, P.M.5
Olson, S.B.6
Moses, R.E.7
Harris, T.M.8
Rizzo, C.J.9
Lloyd, R.S.10
-
5
-
-
0022415233
-
The quantitative detection of various Pt-DNA-adducts in Chinese hamster ovary cells treated with cisplatin: Application of immunochemical techniques
-
Plooy, A. C., Fichtinger-Schepman, A. M., Schutte, H. H., van Dijk, M., and Lohman, P. H. (1985) The quantitative detection of various Pt-DNA-adducts in Chinese hamster ovary cells treated with cisplatin: application of immunochemical techniques. Carcinogenesis 6, 561-566 (Pubitemid 15101787)
-
(1985)
Carcinogenesis
, vol.6
, Issue.4
, pp. 561-566
-
-
Plooy, A.C.M.1
Fichtinger-Schepman, A.M.J.2
Schutte, H.H.3
-
6
-
-
51549098159
-
Mechanism of replication-coupled DNA interstrand crosslink repair
-
Räschle, M., Knipscheer, P., Enoiu, M., Angelov, T., Sun, J., Griffith, J. D., Ellenberger, T. E., Schärer, O. D., and Walter, J. C. (2008) Mechanism of replication-coupled DNA interstrand crosslink repair. Cell 134, 969-980
-
(2008)
Cell
, vol.134
, pp. 969-980
-
-
Räschle, M.1
Knipscheer, P.2
Enoiu, M.3
Angelov, T.4
Sun, J.5
Griffith, J.D.6
Ellenberger, T.E.7
Schärer, O.D.8
Walter, J.C.9
-
7
-
-
77749334630
-
Yeast exonuclease 5 is essential for mitochondrial genome maintenance
-
Burgers, P. M., Stith, C. M., Yoder, B. L., and Sparks, J. L. (2010) Yeast exonuclease 5 is essential for mitochondrial genome maintenance. Mol. Cell. Biol. 30, 1457-1466
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 1457-1466
-
-
Burgers, P.M.1
Stith, C.M.2
Yoder, B.L.3
Sparks, J.L.4
-
8
-
-
65549136266
-
An iron-sulfur cluster is essential for the binding of broken DNA by AddAB-type helicase-nucleases
-
Yeeles, J. T., Cammack, R., and Dillingham, M. S. (2009) An iron-sulfur cluster is essential for the binding of broken DNA by AddAB-type helicase-nucleases. J. Biol. Chem. 284, 7746-7755
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 7746-7755
-
-
Yeeles, J.T.1
Cammack, R.2
Dillingham, M.S.3
-
9
-
-
79955799175
-
Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11
-
Schlacher, K., Christ, N., Siaud, N., Egashira, A., Wu, H., and Jasin, M. (2011) Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11. Cell 145, 529-542
-
(2011)
Cell
, vol.145
, pp. 529-542
-
-
Schlacher, K.1
Christ, N.2
Siaud, N.3
Egashira, A.4
Wu, H.5
Jasin, M.6
-
10
-
-
0027434814
-
Biochemical properties of cloned glutathione S-transferases from Schistosoma mansoni and Schistosoma japonicum
-
Walker, J., Crowley, P., Moreman, A. D., and Barrett, J. (1993) Biochemical properties of cloned glutathione S-transferases from Schistosoma mansoni and Schistosoma japonicum. Mol. Biochem. Parasitol. 61, 255-264
-
(1993)
Mol. Biochem. Parasitol.
, vol.61
, pp. 255-264
-
-
Walker, J.1
Crowley, P.2
Moreman, A.D.3
Barrett, J.4
-
11
-
-
0029807304
-
Activation of the Raf-1 kinase cascade by coumermycin-induced dimerization
-
DOI 10.1038/383178a0
-
Farrar, M. A., Alberol-Ila, J., and Perlmutter, R. M. (1996) Activation of the Raf-1 kinase cascade by coumermycin-induced dimerization. Nature 383, 178-181 (Pubitemid 26303982)
-
(1996)
Nature
, vol.383
, Issue.6596
, pp. 178-181
-
-
Farrar, M.A.1
Alberola-Ila, J.2
Perlmutter, R.M.3
-
12
-
-
33745203951
-
Overproduction and purification of RFC-related clamp loaders and PCNA-related clamps from Saccharomyces cerevisiae
-
Bylund, G. O., Majka, J., and Burgers, P. M. (2006) Overproduction and purification of RFC-related clamp loaders and PCNA-related clamps from Saccharomyces cerevisiae. Methods Enzymol. 409, 1-11
-
(2006)
Methods Enzymol.
, vol.409
, pp. 1-11
-
-
Bylund, G.O.1
Majka, J.2
Burgers, P.M.3
-
13
-
-
33644555829
-
Mammalian Rad9 plays a role in telomere stability, S- And G2-phase-specific cell survival, and homologous recombinational repair
-
Pandita, R. K., Sharma, G. G., Laszlo, A., Hopkins, K. M., Davey, S., Chakhparonian, M., Gupta, A., Wellinger, R. J., Zhang, J., Powell, S. N., Roti Roti, J. L., Lieberman, H. B., and Pandita, T. K. (2006) Mammalian Rad9 plays a role in telomere stability, S- and G2-phase-specific cell survival, and homologous recombinational repair. Mol. Cell. Biol. 26, 1850-1864
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 1850-1864
-
-
Pandita, R.K.1
Sharma, G.G.2
Laszlo, A.3
Hopkins, K.M.4
Davey, S.5
Chakhparonian, M.6
Gupta, A.7
Wellinger, R.J.8
Zhang, J.9
Powell, S.N.10
Roti Roti, J.L.11
Lieberman, H.B.12
Pandita, T.K.13
-
14
-
-
20344365811
-
Involvement of human MOF in ATM function
-
DOI 10.1128/MCB.25.12.5292-5305.2005
-
Gupta, A., Sharma, G. G., Young, C. S., Agarwal, M., Smith, E. R., Paull, T. T., Lucchesi, J. C., Khanna, K. K., Ludwig, T., and Pandita, T. K. (2005) Involvement of human MOF in ATM function. Mol. Cell. Biol. 25, 5292-5305 (Pubitemid 40781125)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.12
, pp. 5292-5305
-
-
Gupta, A.1
Sharma, G.G.2
Young, C.S.H.3
Agarwal, M.4
Smith, E.R.5
Paull, T.T.6
Lucchesi, J.C.7
Khanna, K.K.8
Ludwig, T.9
Pandita, T.K.10
-
15
-
-
0029927131
-
Chromosome aberrations in human fibroblasts induced by monoenergetic neutrons. I. Relative Biological Effectiveness
-
DOI 10.2307/3579364
-
Pandita, T. K., and Geard, C. R. (1996) Chromosome aberrations in human fibroblasts induced by monoenergetic neutrons. I. Relative biological effectiveness. Radiat. Res. 145, 730-739 (Pubitemid 26159521)
-
(1996)
Radiation Research
, vol.145
, Issue.6
, pp. 730-739
-
-
Pandita, T.K.1
Geard, C.R.2
-
16
-
-
10244245025
-
Chromosome end-to-end associations and telomerase activity during cancer progression in human cells after treatment with α-particles simulating radon progeny
-
Pandita, T. K., Hall, E. J., Hei, T. K., Piatyszek, M. A., Wright, W. E., Piao, C. Q., Pandita, R. K., Willey, J. C., Geard, C. R., Kastan, M. B., and Shay, J. W. (1996) Chromosome end-to-end associations and telomerase activity during cancer progression in human cells after treatment with α-particles simulating radon progeny. Oncogene 13, 1423-1430 (Pubitemid 26354190)
-
(1996)
Oncogene
, vol.13
, Issue.7
, pp. 1423-1430
-
-
Pandita, T.K.1
Hall, E.J.2
Hei, T.K.3
Piatyszek, M.A.4
Wright, W.E.5
Piao, C.Q.6
Pandita, R.K.7
Willey, J.C.8
Geard, C.R.9
Kastan, M.B.10
Shay, J.W.11
-
17
-
-
68049097111
-
Cell cycle checkpoint defects contribute to genomic instability in PTEN deficient cells independent of DNA DSB repair
-
Gupta, A., Yang, Q., Pandita, R. K., Hunt, C. R., Xiang, T., Misri, S., Zeng, S., Pagan, J., Jeffery, J., Puc, J., Kumar, R., Feng, Z., Powell, S. N., Bhat, A., Yaguchi, T., Wadhwa, R., Kaul, S. C., Parsons, R., Khanna, K. K., and Pandita, T. K. (2009) Cell cycle checkpoint defects contribute to genomic instability in PTEN deficient cells independent of DNA DSB repair. Cell Cycle 8, 2198-2210
-
(2009)
Cell Cycle
, vol.8
, pp. 2198-2210
-
-
Gupta, A.1
Yang, Q.2
Pandita, R.K.3
Hunt, C.R.4
Xiang, T.5
Misri, S.6
Zeng, S.7
Pagan, J.8
Jeffery, J.9
Puc, J.10
Kumar, R.11
Feng, Z.12
Powell, S.N.13
Bhat, A.14
Yaguchi, T.15
Wadhwa, R.16
Kaul, S.C.17
Parsons, R.18
Khanna, K.K.19
Pandita, T.K.20
more..
-
18
-
-
34248158282
-
Hyperthermia activates a subset of ataxia-telangiectasia mutated effectors independent of DNA strand breaks and heat shock protein 70 status
-
DOI 10.1158/0008-5472.CAN-06-4328
-
Hunt, C. R., Pandita, R. K., Laszlo, A., Higashikubo, R., Agarwal, M., Kitamura, T., Gupta, A., Rief, N., Horikoshi, N., Baskaran, R., Lee, J. H., Löbrich, M., Paull, T. T., Roti Roti, J. L., and Pandita, T. K. (2007) Hyperthermia activates a subset of ataxia-telangiectasia mutated effectors independent of DNA strand breaks and heat shock protein 70 status. Cancer Res. 67, 3010-3017 (Pubitemid 46724837)
-
(2007)
Cancer Research
, vol.67
, Issue.7
, pp. 3010-3017
-
-
Hunt, C.R.1
Pandita, R.K.2
Laszlo, A.3
Higashikubo, R.4
Agarwal, M.5
Kitamura, T.6
Gupta, A.7
Rief, N.8
Horikoshi, N.9
Baskaran, R.10
Lee, J.-H.11
Lobrich, M.12
Paull, T.T.13
Roti, R.J.L.14
Pandita, T.K.15
-
19
-
-
0033000784
-
Atm inactivation results in aberrant telomere clustering during meiotic prophase
-
Pandita, T. K., Westphal, C. H., Anger, M., Sawant, S. G., Geard, C. R., Pandita, R. K., and Scherthan, H. (1999) Atm inactivation results in aberrant telomere clustering during meiotic prophase. Mol. Cell. Biol. 19, 5096-5105 (Pubitemid 29289547)
-
(1999)
Molecular and Cellular Biology
, vol.19
, Issue.7
, pp. 5096-5105
-
-
Pandita, T.K.1
Westphal, C.H.2
Anger, M.3
Sawant, S.G.4
Geard, C.R.5
Pandita, R.K.6
Scherthan, H.7
-
20
-
-
9144271294
-
Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks
-
DOI 10.1038/nature02988
-
Singleton, M. R., Dillingham, M. S., Gaudier, M., Kowalczykowski, S. C., and Wigley, D. B. (2004) Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks. Nature 432, 187-193 (Pubitemid 39545843)
-
(2004)
Nature
, vol.432
, Issue.7014
, pp. 187-193
-
-
Singleton, M.R.1
Dillingham, M.S.2
Gaudier, M.3
Kowalczykowski, S.C.4
Wigley, D.B.5
-
21
-
-
0034581190
-
Coumermycin-induced dimerization of GyrB-containing fusion proteins
-
DOI 10.1016/S0076-6879(00)27293-5
-
Farrar, M. A., Olson, S. H., and Perlmutter, R. M. (2000) Coumermycin-induced dimerization of GyrB-containing fusion proteins. Methods Enzymol. 327, 421-429 (Pubitemid 34193324)
-
(2000)
Methods in Enzymology
, vol.327
, pp. 421-429
-
-
Farrar, M.A.1
Olson, S.H.2
Perlmutter, R.M.3
-
22
-
-
3442896884
-
Replication Protein A phosphorylation and the cellular response to DNA damage
-
DOI 10.1016/j.dnarep.2004.03.028, PII S1568786404000874
-
Binz, S. K., Sheehan, A. M., and Wold, M. S. (2004) Replication protein A phosphorylation and the cellular response to DNA damage. DNA Repair 3, 1015-1024 (Pubitemid 39004091)
-
(2004)
DNA Repair
, vol.3
, Issue.8-9
, pp. 1015-1024
-
-
Binz, S.K.1
Sheehan, A.M.2
Wold, M.S.3
-
23
-
-
0031960691
-
Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism
-
Umezu, K., Sugawara, N., Chen, C., Haber, J. E., and Kolodner, R. D. (1998) Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism. Genetics 148, 989-1005 (Pubitemid 28169013)
-
(1998)
Genetics
, vol.148
, Issue.3
, pp. 989-1005
-
-
Umezu, K.1
Sugawara, N.2
Chen, C.3
Haber, J.E.4
Kolodner, R.D.5
-
24
-
-
0037931365
-
The recombination-deficient mutant RPA (rfa1-t11) is displaced slowly from single-stranded DNA by Rad51 protein
-
DOI 10.1074/jbc.M302995200
-
Kantake, N., Sugiyama, T., Kolodner, R. D., and Kowalczykowski, S. C. (2003) The recombination-deficient mutant RPA (rfa1-t11) is displaced slowly from single-stranded DNA by Rad51 protein. J. Biol. Chem. 278, 23410-23417 (Pubitemid 36830157)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.26
, pp. 23410-23417
-
-
Kantake, N.1
Sugiyama, T.2
Kolodner, R.D.3
Kowalczykowski, S.C.4
-
25
-
-
77952600845
-
Susceptibility pathways in Fanconi's anemia and breast cancer
-
D'Andrea, A. D. (2010) Susceptibility pathways in Fanconi's anemia and breast cancer. N. Engl. J. Med. 362, 1909-1919
-
(2010)
N. Engl. J. Med.
, vol.362
, pp. 1909-1919
-
-
D'Andrea, A.D.1
-
26
-
-
84858796420
-
Insights into Chi recognition from the structure of an AddAB-type helicase-nuclease complex
-
Saikrishnan, K., Yeeles, J. T., Gilhooly, N. S., Krajewski, W. W., Dillingham, M. S., and Wigley, D. B. (2012) Insights into Chi recognition from the structure of an AddAB-type helicase-nuclease complex. EMBO J. 31, 1568-1578
-
(2012)
EMBO J.
, vol.31
, pp. 1568-1578
-
-
Saikrishnan, K.1
Yeeles, J.T.2
Gilhooly, N.S.3
Krajewski, W.W.4
Dillingham, M.S.5
Wigley, D.B.6
-
27
-
-
84867289116
-
Cross talk between the nuclease and helicase activities of Dna2: Role of an essential iron-sulfur cluster domain
-
Pokharel, S., and Campbell, J. L. (2012) Cross talk between the nuclease and helicase activities of Dna2: role of an essential iron-sulfur cluster domain. Nucleic Acids Res. 40, 7821-7830
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7821-7830
-
-
Pokharel, S.1
Campbell, J.L.2
-
28
-
-
79951688343
-
BLM-DNA2-RPA-MRN and EXO1-BLM-RPA-MRN constitute two DNA end resection machineries for human DNA break repair
-
Nimonkar, A. V., Genschel, J., Kinoshita, E., Polaczek, P., Campbell, J. L., Wyman, C., Modrich, P., and Kowalczykowski, S. C. (2011) BLM-DNA2-RPA-MRN and EXO1-BLM-RPA-MRN constitute two DNA end resection machineries for human DNA break repair. Genes Dev. 25, 350-362
-
(2011)
Genes Dev.
, vol.25
, pp. 350-362
-
-
Nimonkar, A.V.1
Genschel, J.2
Kinoshita, E.3
Polaczek, P.4
Campbell, J.L.5
Wyman, C.6
Modrich, P.7
Kowalczykowski, S.C.8
-
29
-
-
0032529167
-
DNA-binding polarity of human replication protein A positions nucleases in nucleotide excision repair
-
de Laat, W. L., Appeldoorn, E., Sugasawa, K., Weterings, E., Jaspers, N. G., and Hoeijmakers, J. H. (1998) DNA-binding polarity of human replication proteinApositions nucleases in nucleotide excision repair. Genes Dev. 12, 2598-2609 (Pubitemid 28406961)
-
(1998)
Genes and Development
, vol.12
, Issue.16
, pp. 2598-2609
-
-
De Laat, W.L.1
Appeldoorn, E.2
Sugasawa, K.3
Weterings, E.4
Jaspers, N.G.J.5
Hoeijmakers, J.H.J.6
-
30
-
-
33748780358
-
Replication protein a directs loading of the DNA damage checkpoint clamp to 5′-DNA junctions
-
DOI 10.1074/jbc.M605176200
-
Majka, J., Binz, S. K., Wold, M. S., and Burgers, P. M. (2006) Replication protein A directs loading of the DNA damage checkpoint clamp to 5′-DNA junctions. J. Biol. Chem. 281, 27855-27861 (Pubitemid 44414497)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.38
, pp. 27855-27861
-
-
Majka, J.1
Binz, S.K.2
Wold, M.S.3
Burgers, P.M.J.4
-
31
-
-
72949123930
-
The Fanconi anemia pathway promotes replication-dependent DNA interstrand cross-link repair
-
Knipscheer, P., Räschle, M., Smogorzewska, A., Enoiu, M., Ho, T. V., Schärer, O. D., Elledge, S. J., and Walter, J. C. (2009) The Fanconi anemia pathway promotes replication-dependent DNA interstrand cross-link repair. Science 326, 1698-1701
-
(2009)
Science
, vol.326
, pp. 1698-1701
-
-
Knipscheer, P.1
Räschle, M.2
Smogorzewska, A.3
Enoiu, M.4
Ho, T.V.5
Schärer, O.D.6
Elledge, S.J.7
Walter, J.C.8
-
32
-
-
33746112995
-
ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe
-
DOI 10.1038/nbt1222, PII NBT1222
-
Matsuyama, A., Arai, R., Yashiroda, Y., Shirai, A., Kamata, A., Sekido, S., Kobayashi, Y., Hashimoto, A., Hamamoto, M., Hiraoka, Y., Horinouchi, S., and Yoshida, M. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24, 841-847 (Pubitemid 44086626)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.7
, pp. 841-847
-
-
Matsuyama, A.1
Arai, R.2
Yashiroda, Y.3
Shirai, A.4
Kamata, A.5
Sekido, S.6
Kobayashi, Y.7
Hashimoto, A.8
Hamamoto, M.9
Hiraoka, Y.10
Horinouchi, S.11
Yoshida, M.12
|