Genome sequence of the corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse

Journal of Bacteriology

Volumn 194, Issue 23, 2012, Pages 6620-6621

  Ramos, Rommel Thiago Jucá ^a   Silva, Artur ^a   Carneiro, Adriana Ribeiro ^a   Pinto, Anne Cybelle ^b   Soares, Siomar de Castro ^b   Santos, Anderson Rodrigues ^b   Almeida, Sintia Silva ^b   Guimarães, Luis Carlos ^b   Aburjaile, Flávia Figueira ^b   Barbosa, Eudes Guilherme Vieira ^b   Dorella, Fernanda Alves ^b   Rocha, Flávia Souza ^b   Cerdeira, Louise Teixeira ^a   Barbosa, Maria Silvanira ^a   Tauch, Andreas ^c   Edman, Judy ^d   Spier, Sharon ^d   Miyoshi, Anderson ^b   Schneider, Maria Paula Cruz ^a   Azevedo, Vasco ^b  

^a FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^b FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^c Center for Biotechnology   (Germany)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Knowledge management; Team knowledge management

Indexed keywords

RIBOSOME RNA; TRANSFER RNA;

ABSCESS; AUSTRALIA; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; BRAZIL; CANADA; CORYNEBACTERIUM PSEUDOTUBERCULOSIS; GC RICH SEQUENCE; GENE SEQUENCE; GOAT; HORSE; LIVESTOCK; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PRIORITY JOURNAL; PSEUDOGENE; RHODOCOCCUS EQUI; SHEEP; UNITED STATES;

ABSCESS; ANIMALS; CALIFORNIA; CORYNEBACTERIUM INFECTIONS; CORYNEBACTERIUM PSEUDOTUBERCULOSIS; DNA, BACTERIAL; GENOME, BACTERIAL; HORSE DISEASES; HORSES; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); CAPRA HIRCUS; CORYNEBACTERIUM PSEUDOTUBERCULOSIS; EQUIDAE; OVIS ARIES;

EID: 84871052088     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01616-12     Document Type: Note

References (11)

1. Cerdeira LT, et al. 2011. Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study. J. Microbiol. Methods 86:218-223.
2. Hernandez D, Francois P, Farinelli L, Osteras M, Schrenzel J. 2008. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer. Genome Res. 18:802-809.
3. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
4. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
5. Ramos RT, et al. 2011. Analysis of quality raw data of second generation sequencers with Quality Assessment Software. BMC Res. Notes 4:130. 5a. Ramos RTJ, et al. Simplifier: a web tool to eliminate redundant NGS contigs. Bioinformation, in press.
6. Ruiz JC, et al. 2011. Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains. PLoS One 6:e18551. doi:10.1371/journal.pone.0018551.
7. Rutherford K, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
8. Silva A, et al. 2011. Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis. J. Bacteriol. 193:323-324.
9. Tsai IJ, Otto TD, Berriman M. 2010. Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol. 11:R41.
10. Zdobnov EM, Apweiler R. 2001. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17:847-848.
11. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.