메뉴 건너뛰기




Volumn 78, Issue 24, 2012, Pages 8703-8711

Microscope-based imaging platform for large-scale analysis of oral biofilms

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATED IMAGE PROCESSING; AUTOMATED MICROSCOPY; BACTERIAL COMPOSITION; BOVINE ENAMEL; CONFOCAL LASER SCANNING MICROSCOPY; ENAMEL SURFACE; EUBACTERIA; FLUORESCENCE IN SITU HYBRIDIZATION; FLUORESCENCE SIGNALS; LARGE-SCALE ANALYSIS; MACRO SCALE; MICROFLORA; MICROSCOPIC METHODS; ORAL CAVITY; RANDOM DISTRIBUTION; SAMPLE SURFACE; STATISTICAL EVALUATION; SURFACE COVERAGES; TECHNICAL LIMITATIONS; WIDE-FIELD;

EID: 84871014599     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02416-12     Document Type: Article
Times cited : (31)

References (54)
  • 1
    • 70349335496 scopus 로고    scopus 로고
    • Bacterial colonization of enamel in situ investigated using fluorescence in situ hybridization
    • Al-Ahmad A, et al. 2009. Bacterial colonization of enamel in situ investigated using fluorescence in situ hybridization. J. Med. Microbiol. 58: 1359-1366.
    • (2009) J. Med. Microbiol. , vol.58 , pp. 1359-1366
    • Al-Ahmad, A.1
  • 2
    • 78449266295 scopus 로고    scopus 로고
    • Biofilm formation and composition on different implant materials in vivo
    • Al-Ahmad A, et al. 2010. Biofilm formation and composition on different implant materials in vivo. J. Biomed. Mater. Res. B Appl. Biomater. 95: 101-109.
    • (2010) J. Biomed. Mater. Res. B Appl. Biomater. , vol.95 , pp. 101-109
    • Al-Ahmad, A.1
  • 3
    • 34248199917 scopus 로고    scopus 로고
    • The in vivo dynamics of Streptococcus spp., Actinomyces naeslundii, Fusobacterium nucleatum and Veillonella spp. in dental plaque biofilm as analysed by five-colour multiplex fluorescence in situ hybridization
    • Al-Ahmad A, et al. 2007. The in vivo dynamics of Streptococcus spp., Actinomyces naeslundii, Fusobacterium nucleatum and Veillonella spp. in dental plaque biofilm as analysed by five-colour multiplex fluorescence in situ hybridization. J. Med. Microbiol. 56:681-687.
    • (2007) J. Med. Microbiol. , vol.56 , pp. 681-687
    • Al-Ahmad, A.1
  • 4
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann RI, et al. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1
  • 5
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 6
    • 4444238913 scopus 로고    scopus 로고
    • Individual vitality pattern of in situ dental biofilms at different locations in the oral cavity
    • Arweiler NB, Hellwig E, Sculean A, Hein N, Auschill TM. 2004. Individual vitality pattern of in situ dental biofilms at different locations in the oral cavity. Caries Res. 38:442-447.
    • (2004) Caries Res , vol.38 , pp. 442-447
    • Arweiler, N.B.1    Hellwig, E.2    Sculean, A.3    Hein, N.4    Auschill, T.M.5
  • 7
    • 0038346368 scopus 로고    scopus 로고
    • Anti-plaque agents in the prevention of biofilm-associated oral diseases
    • Baehni PC, Takeuchi Y. 2003. Anti-plaque agents in the prevention of biofilm-associated oral diseases. Oral Dis. 9(Suppl 1):23-29.
    • (2003) Oral Dis , vol.9 , Issue.SUPPL. 1 , pp. 23-29
    • Baehni, P.C.1    Takeuchi, Y.2
  • 8
    • 33845625705 scopus 로고    scopus 로고
    • Microbial landscapes: new paths to biofilm research
    • Battin TJ, et al. 2007. Microbial landscapes: new paths to biofilm research. Nat. Rev. Microbiol. 5:76-81.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 76-81
    • Battin, T.J.1
  • 9
    • 0021313884 scopus 로고
    • The effects of mutual interaction and host diet on the growth rates of the bacteria Actinomyces viscosus and Streptococcus mutans during colonization of tooth surfaces in diassociated gnotobiotic rats
    • Beckers HJ, van der Hoeven JS. 1984. The effects of mutual interaction and host diet on the growth rates of the bacteria Actinomyces viscosus and Streptococcus mutans during colonization of tooth surfaces in diassociated gnotobiotic rats. Arch. Oral Biol. 29:231-236.
    • (1984) Arch. Oral Biol. , vol.29 , pp. 231-236
    • Beckers, H.J.1    van der Hoeven, J.S.2
  • 11
    • 34548703815 scopus 로고    scopus 로고
    • Use of multiple-displacement amplification and checkerboard DNA-DNA hybridization to examine the microbiota of endodontic infections
    • Brito LC, et al. 2007. Use of multiple-displacement amplification and checkerboard DNA-DNA hybridization to examine the microbiota of endodontic infections. J. Clin. Microbiol. 45:3039-3049.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 3039-3049
    • Brito, L.C.1
  • 12
    • 79952189489 scopus 로고    scopus 로고
    • Micropilot: automation of fluorescence microscopy-based imaging for systems biology
    • Conrad C, et al. 2011. Micropilot: automation of fluorescence microscopy-based imaging for systems biology. Nat. Methods 8:246-249.
    • (2011) Nat. Methods , vol.8 , pp. 246-249
    • Conrad, C.1
  • 13
    • 0037313237 scopus 로고    scopus 로고
    • Understanding biofilm resistance to antibacterial agents
    • Davies D. 2003. Understanding biofilm resistance to antibacterial agents. Nat. Rev. Drug Discov. 2:114-122.
    • (2003) Nat. Rev. Drug Discov. , vol.2 , pp. 114-122
    • Davies, D.1
  • 14
    • 36249003291 scopus 로고    scopus 로고
    • In situ identification of streptococci and other bacteria in initial dental biofilm by confocal laser scanning microscopy and fluorescence in situ hybridization
    • Dige I, Nilsson H, Kilian M, Nyvad B. 2007. In situ identification of streptococci and other bacteria in initial dental biofilm by confocal laser scanning microscopy and fluorescence in situ hybridization. Eur. J. Oral Sci. 115:459-467.
    • (2007) Eur. J. Oral Sci. , vol.115 , pp. 459-467
    • Dige, I.1    Nilsson, H.2    Kilian, M.3    Nyvad, B.4
  • 15
    • 3242793653 scopus 로고    scopus 로고
    • Development of a multispecies oral bacterial community in a saliva-conditioned flow cell
    • Foster JS, Kolenbrander PE. 2004. Development of a multispecies oral bacterial community in a saliva-conditioned flow cell. Appl. Environ. Microbiol. 70:4340-4348.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4340-4348
    • Foster, J.S.1    Kolenbrander, P.E.2
  • 16
    • 84861209251 scopus 로고    scopus 로고
    • Effect of periodontal pathogens on the metatranscriptome of a healthy multispecies biofilm model
    • Frias-Lopez J, Duran-Pinedo A. 2012. Effect of periodontal pathogens on the metatranscriptome of a healthy multispecies biofilm model. J. Bacteriol. 194:2082-2095.
    • (2012) J. Bacteriol. , vol.194 , pp. 2082-2095
    • Frias-Lopez, J.1    Duran-Pinedo, A.2
  • 17
    • 0035289823 scopus 로고    scopus 로고
    • Spatial arrangements and associative behavior of species in an in vitro oral biofilm model
    • Guggenheim M, Shapiro S, Gmur R, Guggenheim B. 2001. Spatial arrangements and associative behavior of species in an in vitro oral biofilm model. Appl. Environ. Microbiol. 67:1343-1350.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1343-1350
    • Guggenheim, M.1    Shapiro, S.2    Gmur, R.3    Guggenheim, B.4
  • 18
    • 1842612577 scopus 로고    scopus 로고
    • Bacterial biofilms: from the natural environment to infectious diseases
    • Hall-Stoodley L, Costerton JW, Stoodley P. 2004. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol. 2:95-108.
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 95-108
    • Hall-Stoodley, L.1    Costerton, J.W.2    Stoodley, P.3
  • 19
    • 73649133262 scopus 로고    scopus 로고
    • Visualization of adherent micro-organisms using different techniques
    • Hannig C, Follo M, Hellwig E, Al-Ahmad A. 2010. Visualization of adherent micro-organisms using different techniques. J. Med. Microbiol. 59:1-7.
    • (2010) J. Med. Microbiol. , vol.59 , pp. 1-7
    • Hannig, C.1    Follo, M.2    Hellwig, E.3    Al-Ahmad, A.4
  • 20
    • 34948841994 scopus 로고    scopus 로고
    • Fluorescence microscopic visualization and quantification of initial bacterial colonization on enamel in situ
    • Hannig C, et al. 2007. Fluorescence microscopic visualization and quantification of initial bacterial colonization on enamel in situ. Arch. Oral Biol. 52:1048-1056.
    • (2007) Arch. Oral Biol. , vol.52 , pp. 1048-1056
    • Hannig, C.1
  • 21
    • 84858003391 scopus 로고    scopus 로고
    • Adherence to streptococci facilitates Fusobacterium nucleatum integration into an oral microbial community
    • He X, et al. 2012. Adherence to streptococci facilitates Fusobacterium nucleatum integration into an oral microbial community. Microb. Ecol. 63:532-542.
    • (2012) Microb. Ecol. , vol.63 , pp. 532-542
    • He, X.1
  • 22
    • 0036208369 scopus 로고    scopus 로고
    • Statistical analysis of Pseudomonas aeruginosa biofilm development: impact of mutations in genes involved in twitching motility, cell-to-cell signaling, and stationary-phase sigma factor expression
    • Heydorn A, et al. 2002. Statistical analysis of Pseudomonas aeruginosa biofilm development: impact of mutations in genes involved in twitching motility, cell-to-cell signaling, and stationary-phase sigma factor expression. Appl. Environ. Microbiol. 68:2008-2017.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2008-2017
    • Heydorn, A.1
  • 23
    • 70350378677 scopus 로고    scopus 로고
    • Bacterial interactions in dental biofilm development
    • Hojo K, Nagaoka S, Ohshima T, Maeda N. 2009. Bacterial interactions in dental biofilm development. J. Dent. Res. 88:982-990.
    • (2009) J. Dent. Res. , vol.88 , pp. 982-990
    • Hojo, K.1    Nagaoka, S.2    Ohshima, T.3    Maeda, N.4
  • 24
    • 2142705750 scopus 로고    scopus 로고
    • Analysis of the effects of chlorhexidine on oral biofilm vitality and structure based on viability profiling and an indicator of membrane integrity
    • Hope CK, Wilson M. 2004. Analysis of the effects of chlorhexidine on oral biofilm vitality and structure based on viability profiling and an indicator of membrane integrity. Antimicrob. Agents Chemother. 48:1461-1468.
    • (2004) Antimicrob. Agents Chemother. , vol.48 , pp. 1461-1468
    • Hope, C.K.1    Wilson, M.2
  • 25
    • 58149218590 scopus 로고    scopus 로고
    • Pyrosequencing analysis of the oral microflora of healthy adults
    • Keijser BJ, et al. 2008. Pyrosequencing analysis of the oral microflora of healthy adults. J. Dent. Res. 87:1016-1020.
    • (2008) J. Dent. Res. , vol.87 , pp. 1016-1020
    • Keijser, B.J.1
  • 26
  • 27
    • 23744438967 scopus 로고    scopus 로고
    • Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis
    • Kumar PS, Griffen AL, Moeschberger ML, Leys EJ. 2005. Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis. J. Clin. Microbiol. 43:3944-3955.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 3944-3955
    • Kumar, P.S.1    Griffen, A.L.2    Moeschberger, M.L.3    Leys, E.J.4
  • 29
    • 9644259073 scopus 로고    scopus 로고
    • Identification of early microbial colonizers in human dental biofilm
    • Li J, et al. 2004. Identification of early microbial colonizers in human dental biofilm. J. Appl. Microbiol. 97:1311-1318.
    • (2004) J. Appl. Microbiol. , vol.97 , pp. 1311-1318
    • Li, J.1
  • 30
    • 0242458219 scopus 로고    scopus 로고
    • A microscope-based screening platform for largescale functional protein analysis in intact cells
    • Liebel U, et al. 2003. A microscope-based screening platform for largescale functional protein analysis in intact cells. FEBS Lett. 554:394-398.
    • (2003) FEBS Lett , vol.554 , pp. 394-398
    • Liebel, U.1
  • 31
    • 25844494431 scopus 로고    scopus 로고
    • Generation of inflammatory stimuli: how bacteria set up inflammatory responses in the gingiva
    • Madianos PN, Bobetsis YA, Kinane DF. 2005. Generation of inflammatory stimuli: how bacteria set up inflammatory responses in the gingiva. J. Clin. Periodontol. 32(Suppl 6):57-71.
    • (2005) J. Clin. Periodontol. , vol.32 , Issue.SUPPL. 6 , pp. 57-71
    • Madianos, P.N.1    Bobetsis, Y.A.2    Kinane, D.F.3
  • 32
    • 2642547950 scopus 로고    scopus 로고
    • Dental plaque as a microbial biofilm
    • Marsh PD. 2004. Dental plaque as a microbial biofilm. Caries Res. 38: 204-211.
    • (2004) Caries Res , vol.38 , pp. 204-211
    • Marsh, P.D.1
  • 33
    • 25844524733 scopus 로고    scopus 로고
    • Dental plaque: biological significance of a biofilm and community life-style
    • Marsh PD. 2005. Dental plaque: biological significance of a biofilm and community life-style. J. Clin. Periodontol. 32(Suppl 6):7-15.
    • (2005) J. Clin. Periodontol. , vol.32 , Issue.SUPPL. 6 , pp. 7-15
    • Marsh, P.D.1
  • 34
    • 38949156935 scopus 로고    scopus 로고
    • Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy
    • McLean JS, Ona ON, Majors PD. 2008. Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy. ISME J. 2:121-131.
    • (2008) ISME J , vol.2 , pp. 121-131
    • McLean, J.S.1    Ona, O.N.2    Majors, P.D.3
  • 35
    • 73349135684 scopus 로고    scopus 로고
    • Basics of standardization and calibration in cytometry-a review
    • Mittag A, Tarnok A. 2009. Basics of standardization and calibration in cytometry-a review. J. Biophotonics 2:470-481.
    • (2009) J. Biophotonics , vol.2 , pp. 470-481
    • Mittag, A.1    Tarnok, A.2
  • 36
    • 77949290454 scopus 로고    scopus 로고
    • Advanced imaging techniques for assessment of structure, composition and function in biofilm systems
    • Neu TR, et al. 2010. Advanced imaging techniques for assessment of structure, composition and function in biofilm systems. FEMS Microbiol. Ecol. 72:1-21.
    • (2010) FEMS Microbiol. Ecol. , vol.72 , pp. 1-21
    • Neu, T.R.1
  • 37
    • 0034547593 scopus 로고    scopus 로고
    • Role of commensal relationships on the spatial structure of a surface-attached microbial consortium
    • Nielsen AT, Tolker-Nielsen T, Barken KB, Molin S. 2000. Role of commensal relationships on the spatial structure of a surface-attached microbial consortium. Environ. Microbiol. 2:59-68.
    • (2000) Environ. Microbiol. , vol.2 , pp. 59-68
    • Nielsen, A.T.1    Tolker-Nielsen, T.2    Barken, K.B.3    Molin, S.4
  • 38
    • 84989525509 scopus 로고
    • Microbiology of the early colonization of human enamel and root surfaces in vivo
    • Nyvad B, Kilian M. 1987. Microbiology of the early colonization of human enamel and root surfaces in vivo. Scand. J. Dent. Res. 95:369-380.
    • (1987) Scand. J. Dent. Res. , vol.95 , pp. 369-380
    • Nyvad, B.1    Kilian, M.2
  • 39
    • 0019754467 scopus 로고
    • Gas-liquid chromatographic analysis of amino acids in pellicle formed on tooth surface and plastic film in vivo
    • Oste R, Ronstrom A, Birkhed D, Edwardsson S, Stenberg M. 1981. Gas-liquid chromatographic analysis of amino acids in pellicle formed on tooth surface and plastic film in vivo. Arch. Oral Biol. 26:635-641.
    • (1981) Arch. Oral Biol. , vol.26 , pp. 635-641
    • Oste, R.1    Ronstrom, A.2    Birkhed, D.3    Edwardsson, S.4    Stenberg, M.5
  • 40
    • 33750061358 scopus 로고    scopus 로고
    • The role of sucrose in cariogenic dental biofilm formation-new insight
    • Paes Leme AF, Koo H, Bellato CM, Bedi G, Cury JA. 2006. The role of sucrose in cariogenic dental biofilm formation-new insight. J. Dent. Res. 85:878-887.
    • (2006) J. Dent. Res. , vol.85 , pp. 878-887
    • Paes Leme, A.F.1    Koo, H.2    Bellato, C.M.3    Bedi, G.4    Cury, J.A.5
  • 41
    • 0038529782 scopus 로고    scopus 로고
    • Coaggregation-mediated interactions of streptococci and actinomyces detected in initial human dental plaque
    • Palmer RJ, Jr, Gordon SM, Cisar JO, Kolenbrander PE. 2003. Coaggregation-mediated interactions of streptococci and actinomyces detected in initial human dental plaque. J. Bacteriol. 185:3400-3409.
    • (2003) J. Bacteriol. , vol.185 , pp. 3400-3409
    • Palmer Jr, R.J.1    Gordon, S.M.2    Cisar, J.O.3    Kolenbrander, P.E.4
  • 43
    • 0034992657 scopus 로고    scopus 로고
    • Bacterial diversity in human subgingival plaque
    • Paster BJ, et al. 2001. Bacterial diversity in human subgingival plaque. J. Bacteriol. 183:3770-3783.
    • (2001) J. Bacteriol. , vol.183 , pp. 3770-3783
    • Paster, B.J.1
  • 44
    • 0345767518 scopus 로고    scopus 로고
    • Combined use of confocal laser scanning microscopy and transmission electron microscopy for visualisation of identical cells processed by cryotechniques
    • Pfeiffer S, Beese M, Boettcher M, Kawaschinski K, Krupinska K. 2003. Combined use of confocal laser scanning microscopy and transmission electron microscopy for visualisation of identical cells processed by cryotechniques. Protoplasma 222:129-137.
    • (2003) Protoplasma , vol.222 , pp. 129-137
    • Pfeiffer, S.1    Beese, M.2    Boettcher, M.3    Kawaschinski, K.4    Krupinska, K.5
  • 47
    • 34548312103 scopus 로고    scopus 로고
    • Antibiotic resistance in an in vitro subgingival biofilm model
    • Sedlacek MJ, Walker C. 2007. Antibiotic resistance in an in vitro subgingival biofilm model. Oral Microbiol. Immunol. 22:333-339.
    • (2007) Oral Microbiol. Immunol. , vol.22 , pp. 333-339
    • Sedlacek, M.J.1    Walker, C.2
  • 48
    • 0036359947 scopus 로고    scopus 로고
    • Dental biofilms: difficult therapeutic targets
    • Socransky SS, Haffajee AD. 2002. Dental biofilms: difficult therapeutic targets. Periodontol. 2000 28:12-55.
    • (2002) Periodontol , vol.2000 , pp. 12-55
    • Socransky, S.S.1    Haffajee, A.D.2
  • 49
    • 52849097866 scopus 로고    scopus 로고
    • Caries ecology revisited: microbial dynamics and the caries process
    • Takahashi N, Nyvad B. 2008. Caries ecology revisited: microbial dynamics and the caries process. Caries Res. 42:409-418.
    • (2008) Caries Res , vol.42 , pp. 409-418
    • Takahashi, N.1    Nyvad, B.2
  • 50
    • 0346099178 scopus 로고    scopus 로고
    • Multiplex FISH analysis of a six-species bacterial biofilm
    • Thurnheer T, Gmur R, Guggenheim B. 2004. Multiplex FISH analysis of a six-species bacterial biofilm. J. Microbiol. Methods 56:37-47.
    • (2004) J. Microbiol. Methods , vol.56 , pp. 37-47
    • Thurnheer, T.1    Gmur, R.2    Guggenheim, B.3
  • 51
    • 0034111261 scopus 로고    scopus 로고
    • In situ studies of pellicle formation on hydroxyapatite discs
    • Vacca Smith AM, Bowen WH. 2000. In situ studies of pellicle formation on hydroxyapatite discs. Arch. Oral Biol. 45:277-291.
    • (2000) Arch. Oral Biol. , vol.45 , pp. 277-291
    • Vacca Smith, A.M.1    Bowen, W.H.2
  • 52
    • 34548472841 scopus 로고    scopus 로고
    • Acid tolerance of biofilm cells of Streptococcus mutans
    • Welin-Neilands J, Svensater G. 2007. Acid tolerance of biofilm cells of Streptococcus mutans. Appl. Environ. Microbiol. 73:5633-5638.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5633-5638
    • Welin-Neilands, J.1    Svensater, G.2
  • 53
    • 0034440093 scopus 로고    scopus 로고
    • Architecture of intact natural human plaque biofilms studied by confocal laser scanning microscopy
    • Wood SR, et al. 2000. Architecture of intact natural human plaque biofilms studied by confocal laser scanning microscopy. J. Dent. Res. 79:21-27.
    • (2000) J. Dent. Res. , vol.79 , pp. 21-27
    • Wood, S.R.1
  • 54
    • 77949759705 scopus 로고    scopus 로고
    • Oral biofilm architecture on natural teeth
    • doi:10.1371/journal.pone.0009321
    • Zijnge V, et al. 2010. Oral biofilm architecture on natural teeth. PLoS One 5:e9321. doi:10.1371/journal.pone.0009321.
    • (2010) PLoS One , vol.5
    • Zijnge, V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.