Time-shift experiments and patterns of adaptation across time and space

Ecology Letters

Volumn 16, Issue 1, 2013, Pages 31-38

  Blanquart, François ^a   Gandon, Sylvain ^a  

^a CENTRE D ECOLOGIE FONCTIONNELLE ET EVOLUTIVE   (France)

Author keywords

AIDS; Experimental evolution; Fluctuating environment; HIV; Host parasite coevolution; Local adaptation; Neutralising antibodies; Red queen; Spatial heterogeneity; Transplant experiments

Indexed keywords

ACQUIRED IMMUNE DEFICIENCY SYNDROME; ANTIBODY; DATA SET; DECOMPOSITION ANALYSIS; ENVIRONMENTAL CHANGE; EXPERIMENTAL STUDY; FITNESS; GENETIC STRUCTURE; HUMAN IMMUNODEFICIENCY VIRUS; IMMUNE RESPONSE; LOCAL ADAPTATION; RED QUEEN HYPOTHESIS; SPATIOTEMPORAL ANALYSIS;

ADAPTATION; ARTICLE; BIOLOGICAL MODEL; ENVIRONMENT; EVOLUTION; HOST PATHOGEN INTERACTION; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; IMMUNOLOGY; PHENOTYPE; TIME;

ADAPTATION, BIOLOGICAL; BIOLOGICAL EVOLUTION; ENVIRONMENT; HIV; HOST-PATHOGEN INTERACTIONS; HUMANS; MODELS, GENETIC; PHENOTYPE; TIME FACTORS;

HUMAN IMMUNODEFICIENCY VIRUS;

EID: 84870929082     PISSN: 1461023X     EISSN: 14610248     Source Type: Journal    
DOI: 10.1111/ele.12007     Document Type: Article

References (50)

1. Barton, N. (1995). A general model for the evolution of recombination. Genet. Res., 65, 123-144.
2. Bennett, A., Lenski, R. & Mittler, J. (1992). Evolutionary adaptation to temperature. i. fitness responses of escherichia coli to changes in its thermal environment. Evolution, 46, 16-30.
3. Bérénos, C., Schmid-Hempel, P. & Wegner, K. (2011). Experimental coevolution leads to a decrease in parasite-induced host mortality. J. Evol. Biol., 24, 1777-1782.
4. Blanquart, F. & Gandon, S. (2011). Evolution of migration in a periodically changing environment. Am. Nat., 177, 188-201.
5. Blanquart, F., Gandon, S. & Nuismer, S. (2012). The effects of migration and drift on local adaptation to a heterogeneous environment. J. Evol. Biol., 25, 1351-1363.
6. Bradshaw, W. & Holzapfel, C. (2001). Genetic shift in photoperiodic response correlated with global warming. Proc. Nat. Acad. Sci., 98, 14509.
7. Buckling, A. & Rainey, P. (2002). Antagonistic coevolution between a bacterium and a bacteriophage. Proc. R. Soc. Lond. B Biol. Sci., 269, 931-936.
8. Burdon, J. & Thrall, P. (1999). Spatial and temporal patterns in coevolving plant and pathogen associations. Am. Nat., 153, 15-33.
9. Burger, R. & Lande, R. (1994). On the distribution of the mean and variance of a quantitative trait under mutation-selection-drift balance. Genetics, 138, 901-912.
10. Burton, D., Stanfield, R. & Wilson, I. (2005). Antibody vs. HIV in a clash of evolutionary titans. Proc. Nat. Acad. Sci. USA., 102, 14943-14948.
11. Charmantier, A., McCleery, R., Cole, L., Perrins, C., Kruuk, L. & Sheldon, B. (2008). Adaptive phenotypic plasticity in response to climate change in a wild bird population. Science, 320, 800-803.
12. Collins, S., Sültemeyer, D. & Bell, G. (2006). Rewinding the tape: selection of algae adapted to high co2 at current and pleistocene levels of co2. Evolution, 60, 1392-1401.
13. Cooke, F., Taylor, P., Francis, C. & Rockwell, R. (1990). Directional selection and clutch size in birds. Am. Nat., 136, 261-267.
14. Cooper, T. & Lenski, R. (2010). Experimental evolution with E. coli in diverse resource environments. i. fluctuating environments promote divergence of replicate populations. BMC Evol. Biol., 10, 11.
15. Decaestecker, E., Gaba, S., Raeymaekers, J., Stoks, R., Van Kerckhoven, L., Ebert, D. et al. (2007). Host-parasite red queendynamics archived in pond sediment. Nature, 450, 870-873.
16. Frank, S. (1991). Spatial variation in coevolutionary dynamics. Evol. Ecol., 5, 193-217.
17. Frank, S. & Slatkin, M. (1992). Fisher's fundamental theorem of natural selection. Trends Ecol. Evol., 7, 92-95.
18. Franks, S., Sim, S. & Weis, A. (2007). Rapid evolution of flowering time by an annual plant in response to a climate fluctuation. Proc. Nat. Acad. Sci., 104, 1278-1282.
19. Frost, S., Wrin, T., Smith, D., Pond, S., Liu, Y., Paxinos, E. et al. (2005). Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection. Proc. Nat. Acad. Sci. USA., 102, 18514.
20. Gaba, S. & Ebert, D. (2009). Time-shift experiments as a tool to study antagonistic coevolution. Trends Ecol. Evol., 24, 226-232.
21. Gandon, S. & Day, T. (2009). Evolutionary epidemiology and the dynamics of adaptation. Evolution, 63, 826-838.
22. Gandon, S. & Otto, S. (2007). The evolution of sex and recombination in response to abiotic or coevolutionary fluctuations in epistasis. Genetics, 175, 1835-1853.
23. Gandon, S., Buckling, A., Decaestecker, E. & Day, T. (2008). Host-parasite coevolution and patterns of adaptation across time and space. J. Evol. Biol., 21, 1861-1866.
24. Garant, D., Kruuk, L., McCleery, R. & Sheldon, B. (2004). Evolution in a changing environment: a case study with great tit fledging mass. Am. Nat., 164, E115-E129.
25. Gillespie, J. (1974). The role of environmental grain in the maintenance of genetic variation. Am. Nat., 108, 831-836.
26. Gómez, P. & Buckling, A. (2011). Bacteria-phage antagonistic coevolution in soil. Science, 332, 106-109.
27. Hadfield, J., Wilson, A. & Kruuk, L. (2011). Cryptic evolution: does environmental deterioration have a genetic basis? Genetics, 187, 1099-1113.
28. Hairston, N. Jr, Lampert, W., Cáceres, C., Holtmeier, C., Weider, L., Gaedke, U. et al. (1999). Rapid evolution revealed by dormant eggs. Nature, 401, 446.
29. Hall, A., Scanlan, P., Morgan, A. & Buckling, A. (2011). Host-parasite coevolutionary arms races give way to fluctuating selection. Ecol. Lett., 14, 635-642.
30. Haraguchi, Y. & Sasaki, A. (1997). Evolutionary pattern of intra-host pathogen antigenic drift: effect of cross-reactivity in immune response. Philos. Trans. R. Soc. Lond. B Biol. Sci., 352, 11-20.
31. Ishii, K., Matsuda, H., Iwasa, Y. & Sasaki, A. (1989). Evolutionarily stable mutation rate in a periodically changing environment. Genetics, 121, 163-174.
32. Johnson, S., Hebsgaard, M., Christensen, T., Mastepanov, M., Nielsen, R., Munch, K. et al. (2007). Ancient bacteria show evidence of dna repair. Proc. Nat. Acad. Sci., 104, 14401.
33. Kassen, R. & Bell, G. (1998). Experimental evolution in chlamydomonas. iv. selection in environments that vary through time at different scales. Heredity, 80, 732-741.
34. Kawecki, T. & Ebert, D. (2004). Conceptual issues in local adaptation. Ecol. Lett., 7, 1225-1241.
35. Koskella, B. & Lively, C. (2007). Advice of the rose: experimental coevolution of a trematode parasite and its snail host. Evolution, 61, 152-159.
36. Kruuk, L. (2004). Estimating genetic parameters in natural populations using the animal model. Philos. Trans. R. Soc. Lond. B Biol. Sci., 359, 873-890.
37. Lande, R. (1976). Natural selection and random genetic drift in phenotypic evolution. Evolution, 30, 314-334.
38. Lande, R. & Shannon, S. (1996). The role of genetic variation in adaptation and population persistence in a changing environment. Evolution, 50, 434-437.
39. M'Gonigle, L., Shen, J. & Otto, S. (2009). Mutating away from your enemies: The evolution of mutation rate in a host-parasite system. Theoretical Population Biology, 75, 301-311.
40. Moore, P., Ranchobe, N., Lambson, B., Gray, E., Cave, E., Abrahams, M. et al. (2009). Limited neutralising antibody specificities drive neutralization escape in early hiv-1 subtype c infection. PLoS Pathog., 5, e1000598.
41. Price, G. (1972). Fisher's fundamental theorem made clear. Ann. Hum. Genet., 36, 129-140.
42. Pulido, F. & Berthold, P. (2010). Current selection for lower migratory activity will drive the evolution of residency in a migratory bird population. Proc. Nat. Acad. Sci., 107, 7341.
43. Reboud, X. & Bell, G. (1997). Experimental evolution in chlamydomonas. iii. evolution of specialist and generalist types in environments that vary in space and time. Heredity, 78, 507-514.
44. Richman, D., Wrin, T., Little, S. & Petropoulos, C. (2003). Rapid evolution of the neutralizing antibody response to hiv type 1 infection. Proc. Nat. Acad. Sci., 100, 4144-4149.
45. Rode, N., Charmantier, A. & Lenormand, T. (2011). Male-female coevolution in the wild: evidence from a time series in Artemia franciscana. Evolution, 65, 2881-2892.
46. Sasaki, A. (2000). Host-parasite coevolution in a multilocus gene-for-gene system. Proc. R. Soc. Lond. B Biol. Sci., 267, 2183.
47. Shimizu, Y., Hijikata, M., Iwamoto, A., Alter, H., Purcell, R. & Yoshikura, H. (1994). Neutralizing antibodies against hepatitis c virus and the emergence of neutralization escape mutant viruses. J. Virol., 68, 1494.
48. Smith, D., Lapedes, A., De Jong, J., Bestebroer, T., Rimmelzwaan, G., Osterhaus, A. & Fouchier, R. (2004). Mapping the antigenic and genetic evolution of influenza virus. Science, 305, 371-376.
49. Thrall, P., Laine, A., Ravensdale, M., Nemri, A., Dodds, P., Barrett, L. et al. (2012). Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation. Ecol. Lett., 15, 425-435.
50. Yashina, S., Gubin, S., Maksimovich, S., Yashina, A., Gakhova, E. & Gilichinsky, D. (2012). Regeneration of whole fertile plants from 30, 000-y-old fruit tissue buried in siberian permafrost. Proc. Nat. Acad. Sci., 109, 4008-4013.