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Volumn 31, Issue 30, 2012, Pages 4175-4189

Analysis of high-throughput screening assays using cluster enrichment

Author keywords

Cluster analysis; Fingerprint descriptors; High throughput screening; Hit selection; HTS hit selection; Murcko fragments; Top X

Indexed keywords

LIPOPOLYSACCHARIDE; PHOSPHATE BUFFERED SALINE;

EID: 84870875356     PISSN: 02776715     EISSN: 10970258     Source Type: Journal    
DOI: 10.1002/sim.5455     Document Type: Article
Times cited : (14)

References (28)
  • 1
    • 16844386538 scopus 로고    scopus 로고
    • Practical approaches to efficient screening: information-rich screening protocol
    • Karnachi PS, Brown FK.Practical approaches to efficient screening: information-rich screening protocol. Journal of Biomolecular Screening 2004; 9:678-686.
    • (2004) Journal of Biomolecular Screening , vol.9 , pp. 678-686
    • Karnachi, P.S.1    Brown, F.K.2
  • 2
    • 28944451649 scopus 로고    scopus 로고
    • Identifying biologically active compound clusters using phenotypic screening data and sampling statistics
    • Klekota J, Brauner E, Schreiber SL.Identifying biologically active compound clusters using phenotypic screening data and sampling statistics. Journal of Chemical Information and Modeling 2005; 45:1824-1836.
    • (2005) Journal of Chemical Information and Modeling , vol.45 , pp. 1824-1836
    • Klekota, J.1    Brauner, E.2    Schreiber, S.L.3
  • 10
    • 0023453329 scopus 로고
    • Silhouettes: a graphical aid to the interpretation and validation of cluster analysis
    • Rousseeuw PJ.Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. Journal of Computational and Applied Mathematics 1987; 20:53-65.
    • (1987) Journal of Computational and Applied Mathematics , vol.20 , pp. 53-65
    • Rousseeuw, P.J.1
  • 12
    • 3242719884 scopus 로고    scopus 로고
    • Application of chemoinformatics to high-throughput screening: practical considerations
    • Parker CN, Schreyer SK.Application of chemoinformatics to high-throughput screening: practical considerations. Methods in Molecular Biology 2004; 275:85-110.
    • (2004) Methods in Molecular Biology , vol.275 , pp. 85-110
    • Parker, C.N.1    Schreyer, S.K.2
  • 14
    • 33947638491 scopus 로고    scopus 로고
    • Application of a mixture model for determining the cutoff threshold for activity in high-throughput screening
    • Tong DM, Buxser S, Vidmar TJ.Application of a mixture model for determining the cutoff threshold for activity in high-throughput screening. Computational Statistics & Data Analysis 2007; 51:4002-4012.
    • (2007) Computational Statistics & Data Analysis , vol.51 , pp. 4002-4012
    • Tong, D.M.1    Buxser, S.2    Vidmar, T.J.3
  • 15
    • 33244482848 scopus 로고    scopus 로고
    • Enrichment of high-throughput screening data with increasing levels of noise using support vector machines, recursive partitioning, and Laplacian-modified naive Bayesian classifiers
    • Glick M, Jenkins JL, Nettles JH, Hitchings H, Davies JW.Enrichment of high-throughput screening data with increasing levels of noise using support vector machines, recursive partitioning, and Laplacian-modified naive Bayesian classifiers. Journal of Chemical Information and Modeling 2006; 46(1):193-200.
    • (2006) Journal of Chemical Information and Modeling , vol.46 , Issue.1 , pp. 193-200
    • Glick, M.1    Jenkins, J.L.2    Nettles, J.H.3    Hitchings, H.4    Davies, J.W.5
  • 16
    • 26944503021 scopus 로고    scopus 로고
    • Using extended-connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up
    • Rogers D, Brown RD, Hahn M.Using extended-connectivity fingerprints with Laplacian-modified Bayesian analysis in high-throughput screening follow-up. Journal of Biomolecular Screening 2005; 10:682-686.
    • (2005) Journal of Biomolecular Screening , vol.10 , pp. 682-686
    • Rogers, D.1    Brown, R.D.2    Hahn, M.3
  • 18
    • 43049157546 scopus 로고    scopus 로고
    • Support vector machines approach for virtual screening of active compounds of single and multiple mechanisms from large libraries at an improved hit-rate and enrichment factor
    • Han LY, Ma XH, Lin HH, Jia J, Zhu F, Xue Y, Li ZR, Cao ZW, Ji ZL, Chen YZ.Support vector machines approach for virtual screening of active compounds of single and multiple mechanisms from large libraries at an improved hit-rate and enrichment factor. Journal of Molecular Graphics & Modelling 2008; 26(8):1276-1286.
    • (2008) Journal of Molecular Graphics & Modelling , vol.26 , Issue.8 , pp. 1276-1286
    • Han, L.Y.1    Ma, X.H.2    Lin, H.H.3    Jia, J.4    Zhu, F.5    Xue, Y.6    Li, Z.R.7    Cao, Z.W.8    Ji, Z.L.9    Chen, Y.Z.10
  • 20
    • 71949130633 scopus 로고    scopus 로고
    • Review article: high-throughput affinity-based technologies for small-molecule drug discovery
    • Zhu Z, Cuozzo J.Review article: high-throughput affinity-based technologies for small-molecule drug discovery. Journal of Biomolecular Screening 2009; 14:1157-1164.
    • (2009) Journal of Biomolecular Screening , vol.14 , pp. 1157-1164
    • Zhu, Z.1    Cuozzo, J.2
  • 21
    • 33745859416 scopus 로고    scopus 로고
    • Methods for mining HTS data
    • Harper G, Pickett S.Methods for mining HTS data. Drug Discovery Today 2006; 11(15-16):694-699.
    • (2006) Drug Discovery Today , vol.11 , Issue.15-16 , pp. 694-699
    • Harper, G.1    Pickett, S.2
  • 24
    • 0029894013 scopus 로고    scopus 로고
    • The properties of known drugs. 1. Molecular frameworks
    • Bemis GW, Murcko MA.The properties of known drugs. 1. Molecular frameworks. Journal of Medicinal Chemistry 1996; 39:2887-2893.
    • (1996) Journal of Medicinal Chemistry , vol.39 , pp. 2887-2893
    • Bemis, G.W.1    Murcko, M.A.2
  • 25
    • 84870888157 scopus 로고    scopus 로고
    • Accelrys Software Inc.. Accelrys Software Inc.: Pipeline Pilot,San Diego
    • Accelrys Software Inc.Chemistry Collection: Basic Chemistry User Guide. Accelrys Software Inc.: Pipeline Pilot, San Diego, 2010.
    • (2010) Chemistry Collection: Basic Chemistry User Guide
  • 27
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y.Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B 1995; 57:289-300.
    • (1995) Journal of the Royal Statistical Society Series B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 28
    • 54949126376 scopus 로고    scopus 로고
    • FlexMix. Version 2: finite mixtures with concomitant variales and varying and constant parameters
    • Grün B, Leisch F.FlexMix. Version 2: finite mixtures with concomitant variales and varying and constant parameters. Journal of Statistical Software 2008; 28(4):1-35.
    • (2008) Journal of Statistical Software , vol.28 , Issue.4 , pp. 1-35
    • Grün, B.1    Leisch, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.