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Volumn , Issue NOV, 2012, Pages

Mean expression of the X-chromosome is associated with neuronal density

Author keywords

Chromosome X; Chromowave; Dosage compensation; Neuronal concentration; Wavelets

Indexed keywords

ALZHEIMER DISEASE; ARTICLE; ASTROCYTOSIS; AUTOSOME; BLOOD CELL; CELL DENSITY; CELL TYPE; DEGENERATIVE DISEASE; GENE EXPRESSION; GENETIC ASSOCIATION; HUMAN; HUNTINGTON CHOREA; MICROARRAY ANALYSIS; MICROGLIA; NERVE CELL; PARKINSON DISEASE; X CHROMOSOME;

EID: 84870868629     PISSN: 16624548     EISSN: 1662453X     Source Type: Journal    
DOI: 10.3389/fnins.2012.00161     Document Type: Article
Times cited : (11)

References (40)
  • 1
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decom position for genome-wide expres sion data processing and model ing
    • Alter, O., Brown, P. O., and Botstein, D. (2000). Singular value decom position for genome-wide expres sion data processing and model ing. Proc. Natl. Acad. Sci. U.S.A. 97, 10101-10106.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 10101-10106
    • Alter, O.1    Brown, P.O.2    Botstein, D.3
  • 2
    • 38849152224 scopus 로고    scopus 로고
    • Chromosomal profiles of gene expression in Huntington's dis ease
    • Anderson, A. N., Roncaroli, F., Hodges, A., Deprez, M., and Turkheimer, F. E. (2008). Chromosomal profiles of gene expression in Huntington's dis ease. Brain 131, 381-388.
    • (2008) Brain , vol.131 , pp. 381-388
    • Anderson, A.N.1    Roncaroli, F.2    Hodges, A.3    Deprez, M.4    Turkheimer, F.E.5
  • 3
    • 1242341923 scopus 로고    scopus 로고
    • Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses
    • Blalock, E. M., Geddes, J. W., Chen, K. C., Porter, N. M., Markesbery, W. R., and Landfield, P. W. (2004). Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Proc. Natl. Acad. Sci. U.S.A. 101, 2173-2178.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 2173-2178
    • Blalock, E.M.1    Geddes, J.W.2    Chen, K.C.3    Porter, N.M.4    Markesbery, W.R.5    Landfield, P.W.6
  • 4
    • 57649083022 scopus 로고    scopus 로고
    • Analysis of gene expression in Parkinson's disease: possible involvement of neurotrophic support and axon guidance in dopaminergic cell death
    • Bossers, K., Meerhoff, G., Balesar, R., van Dongen, J. W., Kruse, C. G., Swaab, D. F., et al. (2009). Analysis of gene expression in Parkinson's disease: possible involvement of neurotrophic support and axon guidance in dopaminergic cell death. Brain Pathol. 19, 91-107.
    • (2009) Brain Pathol , vol.19 , pp. 91-107
    • Bossers, K.1    Meerhoff, G.2    Balesar, R.3    van Dongen, J.W.4    Kruse, C.G.5    Swaab, D.F.6
  • 5
    • 0042706143 scopus 로고    scopus 로고
    • A stain upon the silence: genes escaping X inactivation
    • Brown, C. J., and Greally, J. M. (2003). A stain upon the silence: genes escaping X inactivation. Trends Genet. 19, 432-438.
    • (2003) Trends Genet , vol.19 , pp. 432-438
    • Brown, C.J.1    Greally, J.M.2
  • 6
    • 38149129457 scopus 로고    scopus 로고
    • A transcrip-tome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function
    • Cahoy, J. D., Emery, B., Kaushal, A., Foo, L. C., Zamanian, J. L., Christopher-son, K. S., et al. (2008). A transcrip-tome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function. J. Neu-rosci. 28, 264-278.
    • (2008) J. Neu-rosci. , vol.28 , pp. 264-278
    • Cahoy, J.D.1    Emery, B.2    Kaushal, A.3    Foo, L.C.4    Zamanian, J.L.5    Christopher-son, K.S.6
  • 7
    • 34047271756 scopus 로고    scopus 로고
    • MeCP2 in Rett syndrome: transcriptional repressor or chromatin architectural protein?
    • Chadwick, L. H., and Wade, P.A. (2007). MeCP2 in Rett syndrome: transcriptional repressor or chromatin architectural protein? Curr. Opin. Genet. Dev. 17, 121-125.
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 121-125
    • Chadwick, L.H.1    Wade, P.A.2
  • 8
    • 77952104584 scopus 로고    scopus 로고
    • Statistical expression deconvolution from mixed tissue samples
    • Clarke, J., Seo, P., and Clarke, B. (2010). Statistical expression deconvolution from mixed tissue samples. Bioinfor-matics 26, 1043-1049.
    • (2010) Bioinfor-matics , vol.26 , pp. 1043-1049
    • Clarke, J.1    Seo, P.2    Clarke, B.3
  • 9
    • 82255192364 scopus 로고    scopus 로고
    • Evidence for compensatory upregulation of expressed X-linked genes in mammals Caenorhabditis elegans and Drosophila melanogaster
    • Deng, X., Hiatt, J. B., Nguyen, D. K., Ercan, S., Sturgill, D., Hillier, L. W., et al. (2011). Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nat. Genet. 43, 1179-1185.
    • (2011) Nat. Genet. , vol.43 , pp. 1179-1185
    • Deng, X.1    Hiatt, J.B.2    Nguyen, D.K.3    Ercan, S.4    Sturgill, D.5    Hillier, L.W.6
  • 12
    • 84865738442 scopus 로고    scopus 로고
    • CNS Infections Sepsis and Risk of Parkinson's Disease
    • Available at [accessed May 29,2012]
    • Fang, F., Wirdefeldt, K., Jacks, A., Kamel, E, Ye, W., and Chen, H. (2012). CNS Infections, Sepsis and Risk of Parkinson's Disease. International Journal of Epidemiology. Available at: http://www.ncbi.nlm.nih.gov/pubmed/22523201 [accessed May 29,2012].
    • (2012) International Journal of Epidemiology
    • Fang, F.1    Wirdefeldt, K.2    Jacks, A.3    Kamel, E.4    Ye, W.5    Chen, H.6
  • 13
    • 0344653664 scopus 로고    scopus 로고
    • Neuronal loss correlates with but exceeds neurofibrillary tangles in Alzheimer's disease
    • Gómez-Isla, T., Hollister, R., West, H., Mui, S., Growdon, J. H., Petersen, R. C.,et al. (1997). Neuronal loss correlates with but exceeds neurofibrillary tangles in Alzheimer's disease. Ann. Neurol. 41, 17-24.
    • (1997) Ann. Neurol. , vol.41 , pp. 17-24
    • Gómez-Isla, T.1    Hollister, R.2    West, H.3    Mui, S.4    Growdon, J.H.5    Petersen, R.C.6
  • 15
    • 0028799793 scopus 로고
    • Early loss of neostriatal striosome neurons in Huntington's disease
    • Hedreen, J. C., and Folstein, S. E. (1995). Early loss of neostriatal striosome neurons in Huntington's disease. J. Neuropathol. Exp. Neurol. 54,105-120.
    • (1995) J. Neuropathol. Exp. Neurol. , vol.54 , pp. 105-120
    • Hedreen, J.C.1    Folstein, S.E.2
  • 16
    • 33644783812 scopus 로고    scopus 로고
    • Regional and cellular gene expression changes in human Huntington's disease brain
    • Hodges, A., Strand, A. D., Aragaki,A. K., Kuhn, A., Sengstag, T., Hughes, G., et al. (2006). Regional and cellular gene expression changes in human Huntington's disease brain. Hum. Mol. Genet. 15, 965-977.
    • (2006) Hum. Mol. Genet. , vol.15 , pp. 965-977
    • Hodges, A.1    Strand, A.D.2    Aragaki, A.K.3    Kuhn, A.4    Sengstag, T.5    Hughes, G.6
  • 17
    • 1842427830 scopus 로고    scopus 로고
    • The evolutionary dynamics of eukaryotic gene order
    • Hurst, L. D., Pál, C., and Lercher, M. J. (2004). The evolutionary dynamics of eukaryotic gene order. Nat. Rev. Genet. 5,299-310.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 299-310
    • Hurst, L.D.1    Pál, C.2    Lercher, M.J.3
  • 18
    • 82255179690 scopus 로고    scopus 로고
    • Evidence for dosage compensation between the X chromosome and autosomes in mammals
    • Kharchenko, P. V., Xi, R., and Park, P. J. (2011). Evidence for dosage compensation between the X chromosome and autosomes in mammals. Nat. Genet. 43, 1167-1169.
    • (2011) Nat. Genet. , vol.43 , pp. 1167-1169
    • Kharchenko, P.V.1    Xi, R.2    Park, P.J.3
  • 19
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • doi:10.1186/1471-2105-9-559
    • Langfelder, P., and Horvath, S. (2008). WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 9, 559. doi:10.1186/1471-2105-9-559
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 20
    • 33846619125 scopus 로고    scopus 로고
    • The role of neuronal complexes in human X-linked brain diseases
    • Laumonnier, F., Cuthbert, P. C., and Grant, S. G. N. (2007). The role of neuronal complexes in human X-linked brain diseases. Am. J. Hum. Genet. 80, 205-220.
    • (2007) Am. J. Hum. Genet. , vol.80 , pp. 205-220
    • Laumonnier, F.1    Cuthbert, P.C.2    Grant, S.G.N.3
  • 21
    • 77954948753 scopus 로고    scopus 로고
    • The X chromosome in immune functions: when a chromosome makes the difference
    • Libert, C., Dejager, L., and Pinheiro, I. (2010). The X chromosome in immune functions: when a chromosome makes the difference. Nat. Rev. Immunol. 10, 594-604.
    • (2010) Nat. Rev. Immunol. , vol.10 , pp. 594-604
    • Libert, C.1    Dejager, L.2    Pinheiro, I.3
  • 22
    • 0037246661 scopus 로고    scopus 로고
    • Wavelets in bioinformatics and computational biology: state of art and perspectives
    • Lio, P. (2003). Wavelets in bioinformatics and computational biology: state of art and perspectives. Bioinformatics 19, 2-9.
    • (2003) Bioinformatics , vol.19 , pp. 2-9
    • Lio, P.1
  • 23
    • 80052308980 scopus 로고    scopus 로고
    • Variance of gene expression identifies altered network constraints in neurological disease
    • doi:10.1371/journal.pgen.1002207
    • Mar, J. C., Matigian, N. A., Mackay-Sim, A., Mellick, G. D., Sue, C. M., Sil-burn, P. A., et al. (2011). Variance of gene expression identifies altered network constraints in neurological disease. PLoS Genet. 7, e1002207. doi:10.1371/journal.pgen.1002207
    • (2011) PLoS Genet , vol.7
    • Mar, J.C.1    Matigian, N.A.2    Mackay-Sim, A.3    Mellick, G.D.4    Sue, C.M.5    Sil-burn, P.A.6
  • 24
    • 84877989260 scopus 로고    scopus 로고
    • Elucidating the Triggers, Progression, and Effects of Alzheimer's Disease
    • Available at [accessed May 29,2012]
    • Medeiros, R., Chabrier, M. A., and Laferla, E M. (2012). Elucidating the Triggers, Progression, and Effects of Alzheimer's Disease. Journal of Alzheimer's Disease: JAD. Available at: http://www.ncbi.nlm.nih.gov/ pubmed/22635105 [accessed May 29,2012].
    • (2012) Journal of Alzheimer's Disease: JAD
    • Medeiros, R.1    Chabrier, M.A.2    Laferla, E.M.3
  • 25
    • 81955168073 scopus 로고    scopus 로고
    • Gene expression profiling of the brain: pondering facts and fiction
    • Mitchell, A. C., and Mirnics, K. (2012). Gene expression profiling of the brain: pondering facts and fiction. Neurobiol. Dis. 45, 3-7.
    • (2012) Neurobiol. Dis. , vol.45 , pp. 3-7
    • Mitchell, A.C.1    Mirnics, K.2
  • 26
    • 33644658492 scopus 로고    scopus 로고
    • Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson's disease
    • Moran, L. B., Duke, D. C., Deprez, M., Dexter, D. T., Pearce, R. K. B., and Graeber, M. B. (2006). Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson's disease. Neurogenetics 7, 1-11.
    • (2006) Neurogenetics , vol.7 , pp. 1-11
    • Moran, L.B.1    Duke, D.C.2    Deprez, M.3    Dexter, D.T.4    Pearce, R.K.B.5    Graeber, M.B.6
  • 27
    • 29444455049 scopus 로고    scopus 로고
    • Dosage compensation of the active X chromosome in mammals
    • Nguyen, D. K., and Disteche, C. M. (2006). Dosage compensation of the active X chromosome in mammals. Nat. Genet. 38, 47-53.
    • (2006) Nat. Genet. , vol.38 , pp. 47-53
    • Nguyen, D.K.1    Disteche, C.M.2
  • 28
    • 33845344367 scopus 로고    scopus 로고
    • High expression of the mammalian X chromosome in brain
    • Nguyen, D. K., and Disteche, C. M. (2006). High expression of the mammalian X chromosome in brain. Brain Res. 1126, 46-49.
    • (2006) Brain Res , vol.1126 , pp. 46-49
    • Nguyen, D.K.1    Disteche, C.M.2
  • 30
    • 0344099490 scopus 로고    scopus 로고
    • The X chromosome and fragile X mental retardation
    • Oostra, B. A., and Willemsen, R. (2002). The X chromosome and fragile X mental retardation. Cytogenet. Genome Res. 99, 257-264.
    • (2002) Cytogenet. Genome Res , vol.99 , pp. 257-264
    • Oostra, B.A.1    Willemsen, R.2
  • 31
    • 34347346696 scopus 로고    scopus 로고
    • Mul-tiregional gene expression profiling identifies MRPS6 as a possible candidate gene for Parkinson's disease
    • Papapetropoulos, S., Ffrench-Mullen, J., McCorquodale, D., Qin, Y., Pablo, J., and Mash, D. C. (2006). Mul-tiregional gene expression profiling identifies MRPS6 as a possible candidate gene for Parkinson's disease. GeneExpr. 13, 205-215.
    • (2006) GeneExpr , vol.13 , pp. 205-215
    • Papapetropoulos, S.1    Ffrench-Mullen, J.2    McCorquodale, D.3    Qin, Y.4    Pablo, J.5    Mash, D.C.6
  • 32
    • 28544433843 scopus 로고    scopus 로고
    • Transcriptional response of human microglial cells tointerferon-gamma
    • Rock, R. B., Hu, S., Deshpande, A., Munir, S., May, B. J., Baker, C. A., et al. (2005). Transcriptional response of human microglial cells tointerferon-gamma. GenesImmun. 6, 712-719.
    • (2005) GenesImmun , vol.6 , pp. 712-719
    • Rock, R.B.1    Hu, S.2    Deshpande, A.3    Munir, S.4    May, B.J.5    Baker, C.A.6
  • 35
    • 33845768982 scopus 로고    scopus 로고
    • Dosage compensation: the beginning and end of generalization
    • Straub, T., and Becker, P. B. (2007). Dosage compensation: the beginning and end of generalization. Nat. Rev. Genet. 8,47-57.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 47-57
    • Straub, T.1    Becker, P.B.2
  • 37
    • 33845670300 scopus 로고    scopus 로고
    • Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas
    • doi:10.1186/1471-2105-7-526
    • Turkheimer, E E., Roncaroli, F., Hen-nuy, B., Herens, C., Nguyen, M., Martin, D., et al. (2006). Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas. BMC Bioinformatics 7, 526. doi:10.1186/1471-2105-7-526
    • (2006) BMC Bioinformatics , vol.7 , pp. 526
    • Turkheimer, E.E.1    Roncaroli, F.2    Hen-nuy, B.3    Herens, C.4    Nguyen, M.5    Martin, D.6
  • 39
    • 79955863796 scopus 로고    scopus 로고
    • X-linked disorders with cerebellar dysgenesis
    • Zanni, G., and Bertini, E. S. (2011). X-linked disorders with cerebellar dysgenesis. Orphanet. J. Rare Dis. 6, 24.
    • (2011) Orphanet. J. Rare Dis. , vol.6 , pp. 24
    • Zanni, G.1    Bertini, E.S.2
  • 40
    • 77958072667 scopus 로고    scopus 로고
    • PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease
    • Zheng, B., Liao, Z., Locascio, J. J., Les-niak, K. A., Roderick, S. S., Watt, M. L., et al. (2010). PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease. Sci. Transl. Med. 2, 52ra73.
    • (2010) Sci. Transl. Med. , vol.2 , pp. 52-73
    • Zheng, B.1    Liao, Z.2    Locascio, J.J.3    Les-niak, K.A.4    Roderick, S.S.5    Watt, M.L.6


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