-
1
-
-
0034730140
-
Singular value decom position for genome-wide expres sion data processing and model ing
-
Alter, O., Brown, P. O., and Botstein, D. (2000). Singular value decom position for genome-wide expres sion data processing and model ing. Proc. Natl. Acad. Sci. U.S.A. 97, 10101-10106.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
2
-
-
38849152224
-
Chromosomal profiles of gene expression in Huntington's dis ease
-
Anderson, A. N., Roncaroli, F., Hodges, A., Deprez, M., and Turkheimer, F. E. (2008). Chromosomal profiles of gene expression in Huntington's dis ease. Brain 131, 381-388.
-
(2008)
Brain
, vol.131
, pp. 381-388
-
-
Anderson, A.N.1
Roncaroli, F.2
Hodges, A.3
Deprez, M.4
Turkheimer, F.E.5
-
3
-
-
1242341923
-
Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses
-
Blalock, E. M., Geddes, J. W., Chen, K. C., Porter, N. M., Markesbery, W. R., and Landfield, P. W. (2004). Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Proc. Natl. Acad. Sci. U.S.A. 101, 2173-2178.
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 2173-2178
-
-
Blalock, E.M.1
Geddes, J.W.2
Chen, K.C.3
Porter, N.M.4
Markesbery, W.R.5
Landfield, P.W.6
-
4
-
-
57649083022
-
Analysis of gene expression in Parkinson's disease: possible involvement of neurotrophic support and axon guidance in dopaminergic cell death
-
Bossers, K., Meerhoff, G., Balesar, R., van Dongen, J. W., Kruse, C. G., Swaab, D. F., et al. (2009). Analysis of gene expression in Parkinson's disease: possible involvement of neurotrophic support and axon guidance in dopaminergic cell death. Brain Pathol. 19, 91-107.
-
(2009)
Brain Pathol
, vol.19
, pp. 91-107
-
-
Bossers, K.1
Meerhoff, G.2
Balesar, R.3
van Dongen, J.W.4
Kruse, C.G.5
Swaab, D.F.6
-
5
-
-
0042706143
-
A stain upon the silence: genes escaping X inactivation
-
Brown, C. J., and Greally, J. M. (2003). A stain upon the silence: genes escaping X inactivation. Trends Genet. 19, 432-438.
-
(2003)
Trends Genet
, vol.19
, pp. 432-438
-
-
Brown, C.J.1
Greally, J.M.2
-
6
-
-
38149129457
-
A transcrip-tome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function
-
Cahoy, J. D., Emery, B., Kaushal, A., Foo, L. C., Zamanian, J. L., Christopher-son, K. S., et al. (2008). A transcrip-tome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function. J. Neu-rosci. 28, 264-278.
-
(2008)
J. Neu-rosci.
, vol.28
, pp. 264-278
-
-
Cahoy, J.D.1
Emery, B.2
Kaushal, A.3
Foo, L.C.4
Zamanian, J.L.5
Christopher-son, K.S.6
-
7
-
-
34047271756
-
MeCP2 in Rett syndrome: transcriptional repressor or chromatin architectural protein?
-
Chadwick, L. H., and Wade, P.A. (2007). MeCP2 in Rett syndrome: transcriptional repressor or chromatin architectural protein? Curr. Opin. Genet. Dev. 17, 121-125.
-
(2007)
Curr. Opin. Genet. Dev.
, vol.17
, pp. 121-125
-
-
Chadwick, L.H.1
Wade, P.A.2
-
8
-
-
77952104584
-
Statistical expression deconvolution from mixed tissue samples
-
Clarke, J., Seo, P., and Clarke, B. (2010). Statistical expression deconvolution from mixed tissue samples. Bioinfor-matics 26, 1043-1049.
-
(2010)
Bioinfor-matics
, vol.26
, pp. 1043-1049
-
-
Clarke, J.1
Seo, P.2
Clarke, B.3
-
9
-
-
82255192364
-
Evidence for compensatory upregulation of expressed X-linked genes in mammals Caenorhabditis elegans and Drosophila melanogaster
-
Deng, X., Hiatt, J. B., Nguyen, D. K., Ercan, S., Sturgill, D., Hillier, L. W., et al. (2011). Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nat. Genet. 43, 1179-1185.
-
(2011)
Nat. Genet.
, vol.43
, pp. 1179-1185
-
-
Deng, X.1
Hiatt, J.B.2
Nguyen, D.K.3
Ercan, S.4
Sturgill, D.5
Hillier, L.W.6
-
10
-
-
33747751863
-
Gene expression correlates of neurofibrillary tangles in Alzheimer's disease
-
Dunckley, T., Beach, T. G., Ramsey, K. E., Grover, A., Mastroeni, D., Walker, D. G., et al. (2006). Gene expression correlates of neurofibrillary tangles in Alzheimer's disease. Neurobiol. Aging 27, 1359-1371.
-
(2006)
Neurobiol. Aging
, vol.27
, pp. 1359-1371
-
-
Dunckley, T.1
Beach, T.G.2
Ramsey, K.E.3
Grover, A.4
Mastroeni, D.5
Walker, D.G.6
-
11
-
-
84861083668
-
Inflammatory pathways in Parkinson's disease; A BNE microarray study
-
Durrenberger, P. F., Grünblatt, E., Fernando, F. S., Monoranu, C. M., Evans, J., Riederer, P., et al. (2012). Inflammatory pathways in Parkinson's disease; A BNE microarray study. Parkinsons Dis. 2012, 1-16.
-
(2012)
Parkinsons Dis
, vol.2012
, pp. 1-16
-
-
Durrenberger, P.F.1
Grünblatt, E.2
Fernando, F.S.3
Monoranu, C.M.4
Evans, J.5
Riederer, P.6
-
12
-
-
84865738442
-
CNS Infections Sepsis and Risk of Parkinson's Disease
-
Available at [accessed May 29,2012]
-
Fang, F., Wirdefeldt, K., Jacks, A., Kamel, E, Ye, W., and Chen, H. (2012). CNS Infections, Sepsis and Risk of Parkinson's Disease. International Journal of Epidemiology. Available at: http://www.ncbi.nlm.nih.gov/pubmed/22523201 [accessed May 29,2012].
-
(2012)
International Journal of Epidemiology
-
-
Fang, F.1
Wirdefeldt, K.2
Jacks, A.3
Kamel, E.4
Ye, W.5
Chen, H.6
-
13
-
-
0344653664
-
Neuronal loss correlates with but exceeds neurofibrillary tangles in Alzheimer's disease
-
Gómez-Isla, T., Hollister, R., West, H., Mui, S., Growdon, J. H., Petersen, R. C.,et al. (1997). Neuronal loss correlates with but exceeds neurofibrillary tangles in Alzheimer's disease. Ann. Neurol. 41, 17-24.
-
(1997)
Ann. Neurol.
, vol.41
, pp. 17-24
-
-
Gómez-Isla, T.1
Hollister, R.2
West, H.3
Mui, S.4
Growdon, J.H.5
Petersen, R.C.6
-
14
-
-
34547645967
-
Gender differences in Parkinson's disease
-
Haaxma, C. A., Bloem, B. R., Borm, G. F., Oyen, W J., Leenders, K. L., Eshuis, S., et al. (2007). Gender differences in Parkinson's disease. J. Neurol. Neurosurg. Psychiatr. 78, 819-824.
-
(2007)
J. Neurol. Neurosurg. Psychiatr.
, vol.78
, pp. 819-824
-
-
Haaxma, C.A.1
Bloem, B.R.2
Borm, G.F.3
Oyen, W.J.4
Leenders, K.L.5
Eshuis, S.6
-
15
-
-
0028799793
-
Early loss of neostriatal striosome neurons in Huntington's disease
-
Hedreen, J. C., and Folstein, S. E. (1995). Early loss of neostriatal striosome neurons in Huntington's disease. J. Neuropathol. Exp. Neurol. 54,105-120.
-
(1995)
J. Neuropathol. Exp. Neurol.
, vol.54
, pp. 105-120
-
-
Hedreen, J.C.1
Folstein, S.E.2
-
16
-
-
33644783812
-
Regional and cellular gene expression changes in human Huntington's disease brain
-
Hodges, A., Strand, A. D., Aragaki,A. K., Kuhn, A., Sengstag, T., Hughes, G., et al. (2006). Regional and cellular gene expression changes in human Huntington's disease brain. Hum. Mol. Genet. 15, 965-977.
-
(2006)
Hum. Mol. Genet.
, vol.15
, pp. 965-977
-
-
Hodges, A.1
Strand, A.D.2
Aragaki, A.K.3
Kuhn, A.4
Sengstag, T.5
Hughes, G.6
-
17
-
-
1842427830
-
The evolutionary dynamics of eukaryotic gene order
-
Hurst, L. D., Pál, C., and Lercher, M. J. (2004). The evolutionary dynamics of eukaryotic gene order. Nat. Rev. Genet. 5,299-310.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 299-310
-
-
Hurst, L.D.1
Pál, C.2
Lercher, M.J.3
-
18
-
-
82255179690
-
Evidence for dosage compensation between the X chromosome and autosomes in mammals
-
Kharchenko, P. V., Xi, R., and Park, P. J. (2011). Evidence for dosage compensation between the X chromosome and autosomes in mammals. Nat. Genet. 43, 1167-1169.
-
(2011)
Nat. Genet.
, vol.43
, pp. 1167-1169
-
-
Kharchenko, P.V.1
Xi, R.2
Park, P.J.3
-
19
-
-
60549111634
-
WGCNA: an R package for weighted correlation network analysis
-
doi:10.1186/1471-2105-9-559
-
Langfelder, P., and Horvath, S. (2008). WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 9, 559. doi:10.1186/1471-2105-9-559
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 559
-
-
Langfelder, P.1
Horvath, S.2
-
20
-
-
33846619125
-
The role of neuronal complexes in human X-linked brain diseases
-
Laumonnier, F., Cuthbert, P. C., and Grant, S. G. N. (2007). The role of neuronal complexes in human X-linked brain diseases. Am. J. Hum. Genet. 80, 205-220.
-
(2007)
Am. J. Hum. Genet.
, vol.80
, pp. 205-220
-
-
Laumonnier, F.1
Cuthbert, P.C.2
Grant, S.G.N.3
-
21
-
-
77954948753
-
The X chromosome in immune functions: when a chromosome makes the difference
-
Libert, C., Dejager, L., and Pinheiro, I. (2010). The X chromosome in immune functions: when a chromosome makes the difference. Nat. Rev. Immunol. 10, 594-604.
-
(2010)
Nat. Rev. Immunol.
, vol.10
, pp. 594-604
-
-
Libert, C.1
Dejager, L.2
Pinheiro, I.3
-
22
-
-
0037246661
-
Wavelets in bioinformatics and computational biology: state of art and perspectives
-
Lio, P. (2003). Wavelets in bioinformatics and computational biology: state of art and perspectives. Bioinformatics 19, 2-9.
-
(2003)
Bioinformatics
, vol.19
, pp. 2-9
-
-
Lio, P.1
-
23
-
-
80052308980
-
Variance of gene expression identifies altered network constraints in neurological disease
-
doi:10.1371/journal.pgen.1002207
-
Mar, J. C., Matigian, N. A., Mackay-Sim, A., Mellick, G. D., Sue, C. M., Sil-burn, P. A., et al. (2011). Variance of gene expression identifies altered network constraints in neurological disease. PLoS Genet. 7, e1002207. doi:10.1371/journal.pgen.1002207
-
(2011)
PLoS Genet
, vol.7
-
-
Mar, J.C.1
Matigian, N.A.2
Mackay-Sim, A.3
Mellick, G.D.4
Sue, C.M.5
Sil-burn, P.A.6
-
24
-
-
84877989260
-
Elucidating the Triggers, Progression, and Effects of Alzheimer's Disease
-
Available at [accessed May 29,2012]
-
Medeiros, R., Chabrier, M. A., and Laferla, E M. (2012). Elucidating the Triggers, Progression, and Effects of Alzheimer's Disease. Journal of Alzheimer's Disease: JAD. Available at: http://www.ncbi.nlm.nih.gov/ pubmed/22635105 [accessed May 29,2012].
-
(2012)
Journal of Alzheimer's Disease: JAD
-
-
Medeiros, R.1
Chabrier, M.A.2
Laferla, E.M.3
-
25
-
-
81955168073
-
Gene expression profiling of the brain: pondering facts and fiction
-
Mitchell, A. C., and Mirnics, K. (2012). Gene expression profiling of the brain: pondering facts and fiction. Neurobiol. Dis. 45, 3-7.
-
(2012)
Neurobiol. Dis.
, vol.45
, pp. 3-7
-
-
Mitchell, A.C.1
Mirnics, K.2
-
26
-
-
33644658492
-
Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson's disease
-
Moran, L. B., Duke, D. C., Deprez, M., Dexter, D. T., Pearce, R. K. B., and Graeber, M. B. (2006). Whole genome expression profiling of the medial and lateral substantia nigra in Parkinson's disease. Neurogenetics 7, 1-11.
-
(2006)
Neurogenetics
, vol.7
, pp. 1-11
-
-
Moran, L.B.1
Duke, D.C.2
Deprez, M.3
Dexter, D.T.4
Pearce, R.K.B.5
Graeber, M.B.6
-
27
-
-
29444455049
-
Dosage compensation of the active X chromosome in mammals
-
Nguyen, D. K., and Disteche, C. M. (2006). Dosage compensation of the active X chromosome in mammals. Nat. Genet. 38, 47-53.
-
(2006)
Nat. Genet.
, vol.38
, pp. 47-53
-
-
Nguyen, D.K.1
Disteche, C.M.2
-
28
-
-
33845344367
-
High expression of the mammalian X chromosome in brain
-
Nguyen, D. K., and Disteche, C. M. (2006). High expression of the mammalian X chromosome in brain. Brain Res. 1126, 46-49.
-
(2006)
Brain Res
, vol.1126
, pp. 46-49
-
-
Nguyen, D.K.1
Disteche, C.M.2
-
29
-
-
54949113578
-
Functional organization of the transcriptome in human brain
-
Oldham, M. C., Konopka, G., Iwamoto, K., Langfelder, P., Kato, T., Horvath, S., et al. (2008). Functional organization of the transcriptome in human brain. Nat. Neurosci. 11, 1271-1282.
-
(2008)
Nat. Neurosci.
, vol.11
, pp. 1271-1282
-
-
Oldham, M.C.1
Konopka, G.2
Iwamoto, K.3
Langfelder, P.4
Kato, T.5
Horvath, S.6
-
30
-
-
0344099490
-
The X chromosome and fragile X mental retardation
-
Oostra, B. A., and Willemsen, R. (2002). The X chromosome and fragile X mental retardation. Cytogenet. Genome Res. 99, 257-264.
-
(2002)
Cytogenet. Genome Res
, vol.99
, pp. 257-264
-
-
Oostra, B.A.1
Willemsen, R.2
-
31
-
-
34347346696
-
Mul-tiregional gene expression profiling identifies MRPS6 as a possible candidate gene for Parkinson's disease
-
Papapetropoulos, S., Ffrench-Mullen, J., McCorquodale, D., Qin, Y., Pablo, J., and Mash, D. C. (2006). Mul-tiregional gene expression profiling identifies MRPS6 as a possible candidate gene for Parkinson's disease. GeneExpr. 13, 205-215.
-
(2006)
GeneExpr
, vol.13
, pp. 205-215
-
-
Papapetropoulos, S.1
Ffrench-Mullen, J.2
McCorquodale, D.3
Qin, Y.4
Pablo, J.5
Mash, D.C.6
-
32
-
-
28544433843
-
Transcriptional response of human microglial cells tointerferon-gamma
-
Rock, R. B., Hu, S., Deshpande, A., Munir, S., May, B. J., Baker, C. A., et al. (2005). Transcriptional response of human microglial cells tointerferon-gamma. GenesImmun. 6, 712-719.
-
(2005)
GenesImmun
, vol.6
, pp. 712-719
-
-
Rock, R.B.1
Hu, S.2
Deshpande, A.3
Munir, S.4
May, B.J.5
Baker, C.A.6
-
33
-
-
84859904759
-
Frontal cortex neuropathol-ogy in dementia pugilistica
-
Saing, T., Dick, M., Nelson, P. T., Kim, R. C., Cribbs, D. H., and Head, E. (2012). Frontal cortex neuropathol-ogy in dementia pugilistica. J. Neu-rotrauma 29, 1054-1070.
-
(2012)
J. Neu-rotrauma
, vol.29
, pp. 1054-1070
-
-
Saing, T.1
Dick, M.2
Nelson, P.T.3
Kim, R.C.4
Cribbs, D.H.5
Head, E.6
-
34
-
-
33846465545
-
Molecular markers of early Parkinson's disease based on gene expression in blood
-
Scherzer, C. R., Eklund, A. C., Morse, L. J., Liao, Z., Locascio, J. J., Fefer, D., et al. (2007). Molecular markers of early Parkinson's disease based on gene expression in blood. Proc. Natl. Acad. Sci. U.S.A. 104, 955-960.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 955-960
-
-
Scherzer, C.R.1
Eklund, A.C.2
Morse, L.J.3
Liao, Z.4
Locascio, J.J.5
Fefer, D.6
-
35
-
-
33845768982
-
Dosage compensation: the beginning and end of generalization
-
Straub, T., and Becker, P. B. (2007). Dosage compensation: the beginning and end of generalization. Nat. Rev. Genet. 8,47-57.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 47-57
-
-
Straub, T.1
Becker, P.B.2
-
36
-
-
84857505127
-
X chromosome monosomy in primary and overlapping autoimmune diseases
-
Svyryd, Y., Hernández-Molina, G., Vargas,F., Sánchez-Guerrero, J., Segovia, D. A., and Mutchinick, O. M. (2012). X chromosome monosomy in primary and overlapping autoimmune diseases. Autoimmun. Rev. 11, 301-304.
-
(2012)
Autoimmun. Rev.
, vol.11
, pp. 301-304
-
-
Svyryd, Y.1
Hernández-Molina, G.2
Vargas, F.3
Sánchez-Guerrero, J.4
Segovia, D.A.5
Mutchinick, O.M.6
-
37
-
-
33845670300
-
Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas
-
doi:10.1186/1471-2105-7-526
-
Turkheimer, E E., Roncaroli, F., Hen-nuy, B., Herens, C., Nguyen, M., Martin, D., et al. (2006). Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas. BMC Bioinformatics 7, 526. doi:10.1186/1471-2105-7-526
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 526
-
-
Turkheimer, E.E.1
Roncaroli, F.2
Hen-nuy, B.3
Herens, C.4
Nguyen, M.5
Martin, D.6
-
38
-
-
33646197928
-
Rosettaerror model for gene expression analysis
-
Weng, L., Dai, H., Zhan, Y., He, Y., Stepaniants, S. B., and Bassett, D. E. (2006). Rosettaerror model for gene expression analysis. Bioinformatics 22,1111-1121.
-
(2006)
Bioinformatics
, vol.22
, pp. 1111-1121
-
-
Weng, L.1
Dai, H.2
Zhan, Y.3
He, Y.4
Stepaniants, S.B.5
Bassett, D.E.6
-
39
-
-
79955863796
-
X-linked disorders with cerebellar dysgenesis
-
Zanni, G., and Bertini, E. S. (2011). X-linked disorders with cerebellar dysgenesis. Orphanet. J. Rare Dis. 6, 24.
-
(2011)
Orphanet. J. Rare Dis.
, vol.6
, pp. 24
-
-
Zanni, G.1
Bertini, E.S.2
-
40
-
-
77958072667
-
PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease
-
Zheng, B., Liao, Z., Locascio, J. J., Les-niak, K. A., Roderick, S. S., Watt, M. L., et al. (2010). PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease. Sci. Transl. Med. 2, 52ra73.
-
(2010)
Sci. Transl. Med.
, vol.2
, pp. 52-73
-
-
Zheng, B.1
Liao, Z.2
Locascio, J.J.3
Les-niak, K.A.4
Roderick, S.S.5
Watt, M.L.6
|