-
1
-
-
0002361402
-
Regeneration of plants from somatic cell cultures: Applications for in vitro genetic manipulation
-
In, eds M. Freeling, and V. Walbot (New York, NY: Springer-Verlag)
-
Armstrong, C. L. (1994). "Regeneration of plants from somatic cell cultures: applications for in vitro genetic manipulation, " in The Maize Handbook, eds M. Freeling, and V. Walbot (New York, NY: Springer-Verlag), 663-671.
-
(1994)
The Maize Handbook
, pp. 663-671
-
-
Armstrong, C.L.1
-
2
-
-
0002687545
-
Development and availability of germplasm with high type II culture formation response
-
Armstrong, C. L., Green, C. E., and Phillips, R. L. (1991). Development and availability of germplasm with high type II culture formation response. Maize Genet. Coop. Newslett. 65, 92-93.
-
(1991)
Maize Genet. Coop. Newslett.
, vol.65
, pp. 92-93
-
-
Armstrong, C.L.1
Green, C.E.2
Phillips, R.L.3
-
3
-
-
0024116538
-
Molecular mechanisms in the developmental regulation of the maize suppressor-mutator transposable element
-
Banks, J. A., Masson, P., and Fedoroff, N. (1988). Molecular mechanisms in the developmental regulation of the maize suppressor-mutator transposable element. Genes Dev. 2, 1364-1380.
-
(1988)
Genes Dev.
, vol.2
, pp. 1364-1380
-
-
Banks, J.A.1
Masson, P.2
Fedoroff, N.3
-
4
-
-
34247340840
-
A sequence related to rice Pong transposable element displays transcriptional activation by in vitro culture and reveals somaclonal variations in maize
-
Barret, P., Brinkman, M., and Beckert, M. (2006). A sequence related to rice Pong transposable element displays transcriptional activation by in vitro culture and reveals somaclonal variations in maize. Genome 49, 1399-1407.
-
(2006)
Genome
, vol.49
, pp. 1399-1407
-
-
Barret, P.1
Brinkman, M.2
Beckert, M.3
-
5
-
-
0030892130
-
Maize Activator transposase has a bipartite DNA binding domain that recognizes subterminal sequences and the terminal inverted repeats
-
Becker, H. A., and Kunze, R. (1997). Maize Activator transposase has a bipartite DNA binding domain that recognizes subterminal sequences and the terminal inverted repeats. Mol. Gen. Genet. 254, 219-230.
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 219-230
-
-
Becker, H.A.1
Kunze, R.2
-
6
-
-
0028058893
-
Somatic inactivation and reactivation of Ac associated with changes in cytosine methylation and transposase expression
-
Brutnell, T. P., and Dellaporta, S. L. (1994). Somatic inactivation and reactivation of Ac associated with changes in cytosine methylation and transposase expression. Genetics 138, 213-225.
-
(1994)
Genetics
, vol.138
, pp. 213-225
-
-
Brutnell, T.P.1
Dellaporta, S.L.2
-
7
-
-
0030833390
-
The Ac-st2 element of maize exhibits a positive dosage effect and epigenetic regulation
-
Brutnell, T. P., May, B. P., and Dellaporta, S. L. (1997). The Ac-st2 element of maize exhibits a positive dosage effect and epigenetic regulation. Genetics 147, 823-834.
-
(1997)
Genetics
, vol.147
, pp. 823-834
-
-
Brutnell, T.P.1
May, B.P.2
Dellaporta, S.L.3
-
8
-
-
77953930032
-
Small RNAs, DNA methylation and transposable elements in wheat
-
doi: 10.1186/1471-2164-11-408
-
Cantu, D., Vanzetti, L. S., Sumner, A., Dubcovsky, M., Matvienko, M., Distelfeld, A., Michelmore, R. W., and Dubcovsky, J. (2010). Small RNAs, DNA methylation and transposable elements in wheat. BMC Genomics 11, 408. doi: 10.1186/1471-2164-11-408
-
(2010)
BMC Genomics
, vol.11
, pp. 408
-
-
Cantu, D.1
Vanzetti, L.S.2
Sumner, A.3
Dubcovsky, M.4
Matvienko, M.5
Distelfeld, A.6
Michelmore, R.W.7
Dubcovsky, J.8
-
9
-
-
34250108109
-
Comparison of genetic behaviour of the transposable element Tam3at two unlinked pigment loci in Antirrhinum majus
-
Carpenter, R., Martin, C., and Coen, E. (1987). Comparison of genetic behaviour of the transposable element Tam3at two unlinked pigment loci in Antirrhinum majus. Mol. Gen. Genet. 207, 82-89.
-
(1987)
Mol. Gen. Genet.
, vol.207
, pp. 82-89
-
-
Carpenter, R.1
Martin, C.2
Coen, E.3
-
10
-
-
2542499891
-
MITE display
-
In, eds W. Mille and P. Capy (New York, NY: Humana Press)
-
Casa, A. M., Nagel, A., and Wessler, S. R. (2004). "MITE display, " in Mobile Genetic Elements: Protocols and Genomic Applications, eds W. Mille and P. Capy (New York, NY: Humana Press), 175-188.
-
(2004)
Mobile Genetic Elements: Protocols and Genomic Applications
, pp. 175-188
-
-
Casa, A.M.1
Nagel, A.2
Wessler, S.R.3
-
11
-
-
0345501598
-
DNA modification of a maize transposable element correlates with loss of activity
-
Chandler, V. L., and Walbot, V. (1986). DNA modification of a maize transposable element correlates with loss of activity. Proc. Natl. Acad. Sci. U.S.A. 83, 1767-1771.
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 1767-1771
-
-
Chandler, V.L.1
Walbot, V.2
-
12
-
-
0023284964
-
Inactivation of the maize transposable element Activator(Ac) is associated with its DNA modification
-
Chomet, P. S., Wessler, S., and Dellaporta, S. L. (1987). Inactivation of the maize transposable element Activator(Ac) is associated with its DNA modification. EMBO J. 6, 295-302.
-
(1987)
EMBO J.
, vol.6
, pp. 295-302
-
-
Chomet, P.S.1
Wessler, S.2
Dellaporta, S.L.3
-
13
-
-
0024473977
-
Activation and demethylation of the intracisternal A particle genes by 5-azacytidine
-
Davis, C. M., Constantinides, P. G., van der Riet, F., van Schalkwyk, L., Gevers, W., and Parker, M. I. (1989). Activation and demethylation of the intracisternal A particle genes by 5-azacytidine. Cell Differ. Dev. 27, 83-93.
-
(1989)
Cell Differ. Dev.
, vol.27
, pp. 83-93
-
-
Davis, C.M.1
Constantinides, P.G.2
van der Riet, F.3
van Schalkwyk, L.4
Gevers, W.5
Parker, M.I.6
-
14
-
-
0025716320
-
DNA methylation of maize transposable elements is correlated with activity
-
Dennis, E. S., and Brettell, R. I. (1990). DNA methylation of maize transposable elements is correlated with activity. Philos. Trans. R. Soc. Lond. B Biol. Sci. 326, 217-229.
-
(1990)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.326
, pp. 217-229
-
-
Dennis, E.S.1
Brettell, R.I.2
-
15
-
-
36549081460
-
Give-and-take: Interactions between DNA transposons and their host plant genomes
-
Dooner, H. K., and Weil, C. F. (2007). Give-and-take: interactions between DNA transposons and their host plant genomes. Curr. Opin. Genet Dev. 17, 486-492.
-
(2007)
Curr. Opin. Genet Dev.
, vol.17
, pp. 486-492
-
-
Dooner, H.K.1
Weil, C.F.2
-
16
-
-
0034143320
-
A highly conserved domain of the maize activator transposase is involved in dimerization
-
Essers, L., Adolphs, R. H., and Kunze, R. (2000). A highly conserved domain of the maize activator transposase is involved in dimerization. Plant Cell 12, 211-224.
-
(2000)
Plant Cell
, vol.12
, pp. 211-224
-
-
Essers, L.1
Adolphs, R.H.2
Kunze, R.3
-
17
-
-
0000083981
-
Sequential occurrence of mutations in a growing rice callus
-
Fukui, K. (1983). Sequential occurrence of mutations in a growing rice callus. Theor. Appl. Genet. 65, 225-230.
-
(1983)
Theor. Appl. Genet.
, vol.65
, pp. 225-230
-
-
Fukui, K.1
-
18
-
-
0031439952
-
The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses
-
Grandbastien, M. A., Lucas, H., Morel, J. B., Mhiri, C., Vernhettes, S., and Casacuberta, J. M. (1997). The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses. Genetica 100, 241-252.
-
(1997)
Genetica
, vol.100
, pp. 241-252
-
-
Grandbastien, M.A.1
Lucas, H.2
Morel, J.B.3
Mhiri, C.4
Vernhettes, S.5
Casacuberta, J.M.6
-
19
-
-
0024978849
-
Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
-
Grandbastien, M. A., Spielmann, A., and Caboche, M. (1989). Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337, 376-380.
-
(1989)
Nature
, vol.337
, pp. 376-380
-
-
Grandbastien, M.A.1
Spielmann, A.2
Caboche, M.3
-
20
-
-
0029853344
-
Molecular and functional characterization of slide, an Ac-like autonomous transposable element from tobacco
-
Grappin, P., Audeon, C., Chupeau, M. C., and Grandbastien, M. A. (1996). Molecular and functional characterization of slide, an Ac-like autonomous transposable element from tobacco. Mol. Gen. Genet. 252, 386-397.
-
(1996)
Mol. Gen. Genet.
, vol.252
, pp. 386-397
-
-
Grappin, P.1
Audeon, C.2
Chupeau, M.C.3
Grandbastien, M.A.4
-
21
-
-
0027168422
-
Activation of tobacco retrotransposons during tissue culture
-
Hirochika, H. (1993). Activation of tobacco retrotransposons during tissue culture. EMBO J. 12, 2521-2528.
-
(1993)
EMBO J.
, vol.12
, pp. 2521-2528
-
-
Hirochika, H.1
-
22
-
-
0034103860
-
Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation
-
Hirochika, H., Okamoto, H., and Kakutani, T. (2000). Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation. Plant Cell 12, 357-369.
-
(2000)
Plant Cell
, vol.12
, pp. 357-369
-
-
Hirochika, H.1
Okamoto, H.2
Kakutani, T.3
-
23
-
-
0029824259
-
Retrotransposons of rice involved in mutations induced by tissue culture
-
Hirochika, H., Sugimoto, K., Otsuki, Y., Tsugawa, H., and Kanda, M. (1996). Retrotransposons of rice involved in mutations induced by tissue culture. Proc. Natl. Acad. Sci. U.S.A. 93, 7783-7788.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 7783-7788
-
-
Hirochika, H.1
Sugimoto, K.2
Otsuki, Y.3
Tsugawa, H.4
Kanda, M.5
-
24
-
-
0022648258
-
Effects of 5-azacytidine on expression of endogenous retrovirus-related sequences in C3H 10T1/2 cells
-
Hsiao, W. L., Gattoni-Celli, S., and Weinstein, I. B. (1986). Effects of 5-azacytidine on expression of endogenous retrovirus-related sequences in C3H 10T1/2 cells. J. Virol. 57, 1119-1126.
-
(1986)
J. Virol.
, vol.57
, pp. 1119-1126
-
-
Hsiao, W.L.1
Gattoni-Celli, S.2
Weinstein, I.B.3
-
25
-
-
0346034923
-
An active DNA transposon family in rice
-
Jiang, N., Bao, Z., Zhang, X., Hirochika, H., Eddy, S. R., McCouch, S. R., and Wessler, S. R. (2003). An active DNA transposon family in rice. Nature 421, 163-167.
-
(2003)
Nature
, vol.421
, pp. 163-167
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Hirochika, H.4
Eddy, S.R.5
McCouch, S.R.6
Wessler, S.R.7
-
26
-
-
0022066036
-
A low copy number, copia-like transposon in maize
-
Johns, M. A., Mottinger, J., and Freeling, M. (1985). A low copy number, copia-like transposon in maize. EMBO J. 4, 1093-1101.
-
(1985)
EMBO J.
, vol.4
, pp. 1093-1101
-
-
Johns, M.A.1
Mottinger, J.2
Freeling, M.3
-
27
-
-
0033832279
-
Epigenetic aspects of somaclonal variation in plants
-
Kaeppler, S. M., Kaeppler, H. F., and Rhee, Y. (2000). Epigenetic aspects of somaclonal variation in plants. Plant Mol. Biol. 43, 179-188.
-
(2000)
Plant Mol. Biol.
, vol.43
, pp. 179-188
-
-
Kaeppler, S.M.1
Kaeppler, H.F.2
Rhee, Y.3
-
28
-
-
0027430010
-
Tissue culture-induced DNA methylation variation in maize
-
Kaeppler, S. M., and Phillips, R. L. (1993). Tissue culture-induced DNA methylation variation in maize. Proc. Natl. Acad. Sci. U.S.A. 90, 8773-8776.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 8773-8776
-
-
Kaeppler, S.M.1
Phillips, R.L.2
-
29
-
-
0034612315
-
Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
-
Kalendar, R., Tanskanen, J., Immonen, S., Nevo, E., and Schulman, A. H. (2000). Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc. Natl. Acad. Sci. U.S.A. 97, 6603-6607.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 6603-6607
-
-
Kalendar, R.1
Tanskanen, J.2
Immonen, S.3
Nevo, E.4
Schulman, A.H.5
-
30
-
-
0037226595
-
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
-
Kashkush, K., Feldman, M., and Levy, A. A. (2003). Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat. Genet. 33, 102-106.
-
(2003)
Nat. Genet.
, vol.33
, pp. 102-106
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
31
-
-
0346003772
-
The plant MITE mPing is mobilized in anther culture
-
Kikuchi, K., Terauchi, K., Wada, M., and Hirano, H. Y. (2003). The plant MITE mPing is mobilized in anther culture. Nature 421, 167-170.
-
(2003)
Nature
, vol.421
, pp. 167-170
-
-
Kikuchi, K.1
Terauchi, K.2
Wada, M.3
Hirano, H.Y.4
-
32
-
-
0035544120
-
OARE-1, a Ty1-copia retrotransposon in oat activated by abiotic and biotic stresses
-
Kimura, Y., Tosa, Y., Shimada, S., Sogo, R., Kusaba, M., Sunaga, T., Betsuyaku, S., Eto, Y., Nakayashiki, H., and Mayama, S. (2001). OARE-1, a Ty1-copia retrotransposon in oat activated by abiotic and biotic stresses. Plant Cell Physiol. 42, 1345-1354.
-
(2001)
Plant Cell Physiol.
, vol.42
, pp. 1345-1354
-
-
Kimura, Y.1
Tosa, Y.2
Shimada, S.3
Sogo, R.4
Kusaba, M.5
Sunaga, T.6
Betsuyaku, S.7
Eto, Y.8
Nakayashiki, H.9
Mayama, S.10
-
33
-
-
0043030233
-
Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma
-
Komatsu, M., Shimamoto, K., and Kyozuka, J. (2003). Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma. Plant Cell 15, 1934-1944.
-
(2003)
Plant Cell
, vol.15
, pp. 1934-1944
-
-
Komatsu, M.1
Shimamoto, K.2
Kyozuka, J.3
-
34
-
-
33644788375
-
Dedifferentiation of tobacco cells is associated with ribosomal RNA gene hypomethylation, increased transcription, and chromatin alterations
-
Koukalova, B., Fojtova, M., Lim, K. Y., Fulnecek, J., Leitch, A. R., and Kovarik, A. (2005). Dedifferentiation of tobacco cells is associated with ribosomal RNA gene hypomethylation, increased transcription, and chromatin alterations. Plant Physiol. 139, 275-286.
-
(2005)
Plant Physiol.
, vol.139
, pp. 275-286
-
-
Koukalova, B.1
Fojtova, M.2
Lim, K.Y.3
Fulnecek, J.4
Leitch, A.R.5
Kovarik, A.6
-
35
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar, S., Tamura, K., and Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 5, 150-163.
-
(2004)
Brief. Bioinformatics
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
36
-
-
0024461833
-
The putative transposase of transposable element Ac from Zea mays L. interacts with subterminal sequences of Ac
-
Kunze, R., and Starlinger, P. (1989). The putative transposase of transposable element Ac from Zea mays L. interacts with subterminal sequences of Ac. EMBO J. 8, 3177-3185.
-
(1989)
EMBO J.
, vol.8
, pp. 3177-3185
-
-
Kunze, R.1
Starlinger, P.2
-
37
-
-
0002452079
-
The hAT and CACTA superfamilies of plant transposons
-
In, eds N. L. Craig, R. Craigie, M. Gellert, and A. Lambowitz (Herndon: VAASM Press)
-
Kunze, R., and Weil, C. (2002). "The hAT and CACTA superfamilies of plant transposons, " in Mobile DNA II, eds N. L. Craig, R. Craigie, M. Gellert, and A. Lambowitz (Herndon: VAASM Press), 997-1007.
-
(2002)
Mobile DNA II
, pp. 997-1007
-
-
Kunze, R.1
Weil, C.2
-
38
-
-
22244453132
-
Chromatin remodeling in plant cell culture: Patterns of DNA methylation and histone H3 and H4 acetylation vary during growth of asynchronous potato cell suspensions
-
Law, R. D., and Suttle, J. C. (2005). Chromatin remodeling in plant cell culture: patterns of DNA methylation and histone H3 and H4 acetylation vary during growth of asynchronous potato cell suspensions. Plant Physiol. Biochem. 43, 527-534.
-
(2005)
Plant Physiol. Biochem.
, vol.43
, pp. 527-534
-
-
Law, R.D.1
Suttle, J.C.2
-
39
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman, Z., Gendrel, A. V., Black, M., Vaughn, M. W., Dedhia, N., McCombie, W. R., Lavine, K., Mittal, V., May, B., Kasschau, K. D., Carrington, J. C., Doerge, R. W., Colot, V., and Martienssen, R. (2004). Role of transposable elements in heterochromatin and epigenetic control. Nature 430, 471-476.
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.D.10
Carrington, J.C.11
Doerge, R.W.12
Colot, V.13
Martienssen, R.14
-
40
-
-
4243085624
-
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
-
doi: 10.1371/journal.pbio.0000067
-
Lippman, Z., May, B., Yordan, C., Singer, T., and Martienssen, R. (2003). Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol. 1, E67. doi: 10.1371/journal.pbio.0000067
-
(2003)
PLoS Biol.
, vol.1
-
-
Lippman, Z.1
May, B.2
Yordan, C.3
Singer, T.4
Martienssen, R.5
-
41
-
-
13444262384
-
CDD: A conserved domain database for protein classification
-
Marchler-Bauer, A., Anderson, J. B., Cherukuri, P. F., DeWeese-Scott, C., Geer, L. Y., Gwadz, M., He, S., Hurwitz, D. I., Jackson, J. D., Ke, Z., Lanczycki, C. J., Liebert, C. A., Liu, C., Lu, F., Marchler, G. H., Mullokandov, M., Shoemaker, B. A., Simonyan, V., Song, J. S., Thiessen, P. A., Yamashita, R. A., Yin, J. J., Zhang, D., and Bryant, S. H. (2005). CDD: a conserved domain database for protein classification. Nucleic Acids Res. 33, D192-D196.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Cherukuri, P.F.3
DeWeese-Scott, C.4
Geer, L.Y.5
Gwadz, M.6
He, S.7
Hurwitz, D.I.8
Jackson, J.D.9
Ke, Z.10
Lanczycki, C.J.11
Liebert, C.A.12
Liu, C.13
Lu, F.14
Marchler, G.H.15
Mullokandov, M.16
Shoemaker, B.A.17
Simonyan, V.18
Song, J.S.19
Thiessen, P.A.20
Yamashita, R.A.21
Yin, J.J.22
Zhang, D.23
Bryant, S.H.24
more..
-
42
-
-
3242887157
-
CD-Search: Protein domain annotations on the fly
-
Marchler-Bauer, A., and Bryant, S. H. (2004). CD-Search: protein domain annotations on the fly. Nucleic Acids Res.32, W327-W331.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
43
-
-
0024655653
-
Activity of the transposon Tam3 in Antirrhinum and tobacco: Possible role of DNA methylation
-
Martin, C., Prescott, A., Lister, C., and MacKay, S. (1989). Activity of the transposon Tam3 in Antirrhinum and tobacco: possible role of DNA methylation. EMBO J. 8, 997-1004.
-
(1989)
EMBO J.
, vol.8
, pp. 997-1004
-
-
Martin, C.1
Prescott, A.2
Lister, C.3
McKay, S.4
-
44
-
-
0034596989
-
Transcriptional silencing and promoter methylation triggered by double-stranded RNA
-
Mette, M. F., Aufsatz, W., van der Winden, J., Matzke, M. A., and Matzke, A. J. (2000). Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J. 19, 5194-5201.
-
(2000)
EMBO J.
, vol.19
, pp. 5194-5201
-
-
Mette, M.F.1
Aufsatz, W.2
van der Winden, J.3
Matzke, M.A.4
Matzke, A.J.5
-
45
-
-
0032751471
-
Epigenetic inheritance at the agouti locus in the mouse
-
Morgan, H. D., Sutherland, H. G., Martin, D. I., and Whitelaw, E. (1999). Epigenetic inheritance at the agouti locus in the mouse. Nat. Genet. 23, 314-318.
-
(1999)
Nat. Genet.
, vol.23
, pp. 314-318
-
-
Morgan, H.D.1
Sutherland, H.G.2
Martin, D.I.3
Whitelaw, E.4
-
46
-
-
0034541591
-
Retrotransposable L1 elements expressed in rheumatoid arthritis synovial tissue: Association with genomic DNA hypomethylation and influence on gene expression
-
Neidhart, M., Rethage, J., Kuchen, S., Kunzler, P., Crowl, R. M., Billingham, M. E., Gay, R. E., and Gay, S. (2000). Retrotransposable L1 elements expressed in rheumatoid arthritis synovial tissue: association with genomic DNA hypomethylation and influence on gene expression. Arthritis Rheum. 43, 2634-2647.
-
(2000)
Arthritis Rheum.
, vol.43
, pp. 2634-2647
-
-
Neidhart, M.1
Rethage, J.2
Kuchen, S.3
Kunzler, P.4
Crowl, R.M.5
Billingham, M.E.6
Gay, R.E.7
Gay, S.8
-
47
-
-
0010444458
-
Stability of the Suppressor element in two mutator systems at the A1 locus in maize
-
Neuffer, M. G. (1966). Stability of the Suppressor element in two mutator systems at the A1 locus in maize. Genetics53, 541-549.
-
(1966)
Genetics
, vol.53
, pp. 541-549
-
-
Neuffer, M.G.1
-
48
-
-
0024743344
-
Tagging of a maize gene involved in kernel development by an activated Uqtransposable element
-
Pan, Y. B., and Peterson, P. A. (1989). Tagging of a maize gene involved in kernel development by an activated Uqtransposable element. Mol. Gen. Genet. 219, 324-327.
-
(1989)
Mol. Gen. Genet.
, vol.219
, pp. 324-327
-
-
Pan, Y.B.1
Peterson, P.A.2
-
49
-
-
0000756162
-
Genetic and molecular analysis of tissue-culture-derived Ac elements
-
Peschke, V. M., Phillips, R. L., and Gengenbach, B. G. (1991). Genetic and molecular analysis of tissue-culture-derived Ac elements. Theor. Appl. Genet. 82, 121-129.
-
(1991)
Theor. Appl. Genet.
, vol.82
, pp. 121-129
-
-
Peschke, V.M.1
Phillips, R.L.2
Gengenbach, B.G.3
-
50
-
-
37049183894
-
Discovery of transposable element activity among progeny of tissue culture-derived maize plants
-
Peschke, V. M., Phillips, R. L., and Gengenbach, B. G. (1987). Discovery of transposable element activity among progeny of tissue culture-derived maize plants. Science 238, 804-807.
-
(1987)
Science
, vol.238
, pp. 804-807
-
-
Peschke, V.M.1
Phillips, R.L.2
Gengenbach, B.G.3
-
51
-
-
0028360187
-
Genetic instability of plant tissue cultures: Breakdown of normal controls
-
Phillips, R. L., Kaeppler, S. M., and Olhoft, P. (1994). Genetic instability of plant tissue cultures: breakdown of normal controls. Proc. Natl. Acad. Sci. U.S.A. 91, 5222-5226.
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 5222-5226
-
-
Phillips, R.L.1
Kaeppler, S.M.2
Olhoft, P.3
-
52
-
-
0024759440
-
Molecular and genetic characterization of Mu transposable elements in Zea mays: Behavior in callus culture and regenerated plants
-
Planckaert, F., and Walbot, V. (1989). Molecular and genetic characterization of Mu transposable elements in Zea mays: behavior in callus culture and regenerated plants. Genetics 123, 567-578.
-
(1989)
Genetics
, vol.123
, pp. 567-578
-
-
Planckaert, F.1
Walbot, V.2
-
53
-
-
0021695885
-
Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics
-
Saghai-Maroof, M. A., Soliman, K. M., Jorgensen, R. A., and Allard, R. W. (1984). Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U.S.A. 81, 8014-8018.
-
(1984)
Proc. Natl. Acad. Sci. U.S.A.
, vol.81
, pp. 8014-8018
-
-
Saghai-Maroof, M.A.1
Soliman, K.M.2
Jorgensen, R.A.3
Allard, R.W.4
-
54
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M., Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., Mcmahan, L., Van Buren, P., Vaughn, M. W., Ying, K., Yeh, C. T., Emrich, S. J., Jia, Y., Kalyanaraman, A., Hsia, A. P., Barbazuk, W. B., Baucom, R. S., Brutnell, T. P., Carpita, N. C., Chaparro, C., Chia, J. M., Deragon, J. M., Estill, J. C., Fu, Y., Jeddeloh, J. A., Han, Y., Lee, H., Li, P., Lisch, D. R., Liu, S., Liu, Z., Nagel, D. H., McCann, M. C., SanMiguel, P., Myers, A. M., Nettleton, D., Nguyen, J., Penning, B. W., Ponnala, L., Schneider, K. L., Schwartz, D. C., Sharma, A., Soderlund, C., Springer, N. M., Sun, Q., Wang, H., Waterman, M., Westerman, R., Wolfgruber, T. K., Yang, L., Yu, Y., Zhang, L., Zhou, S., Zhu, Q., Bennetzen, J. L., Dawe, R. K., Jiang, J., Jiang, N., Presting, G. G., Wessler, S. R., Aluru, S., Martienssen, R. A., Clifton, S. W., McCombie, W. R., Wing, R. A., and Wilson, R. K. (2009). The B73 maize genome: complexity, diversity, and dynamics. Science 326, 1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
Minx, P.11
Reily, A.D.12
Courtney, L.13
Kruchowski, S.S.14
Tomlinson, C.15
Strong, C.16
Delehaunty, K.17
Fronick, C.18
Courtney, B.19
Rock, S.M.20
Belter, E.21
Du, F.22
Kim, K.23
Abbott, R.M.24
Cotton, M.25
Levy, A.26
Marchetto, P.27
Ochoa, K.28
Jackson, S.M.29
Gillam, B.30
Chen, W.31
Yan, L.32
Higginbotham, J.33
Cardenas, M.34
Waligorski, J.35
Applebaum, E.36
Phelps, L.37
Falcone, J.38
Kanchi, K.39
Thane, T.40
Scimone, A.41
Thane, N.42
Henke, J.43
Wang, T.44
Ruppert, J.45
Shah, N.46
Rotter, K.47
Hodges, J.48
Ingenthron, E.49
Cordes, M.50
Kohlberg, S.51
Sgro, J.52
Delgado, B.53
Mead, K.54
Chinwalla, A.55
Leonard, S.56
Crouse, K.57
Collura, K.58
Kudrna, D.59
Currie, J.60
He, R.61
Angelova, A.62
Rajasekar, S.63
Mueller, T.64
Lomeli, R.65
Scara, G.66
Ko, A.67
Delaney, K.68
Wissotski, M.69
Lopez, G.70
Campos, D.71
Braidotti, M.72
Ashley, E.73
Golser, W.74
Kim, H.75
Lee, S.76
Lin, J.77
Dujmic, Z.78
Kim, W.79
Talag, J.80
Zuccolo, A.81
Fan, C.82
Sebastian, A.83
Kramer, M.84
Spiegel, L.85
Nascimento, L.86
Zutavern, T.87
Miller, B.88
Ambroise, C.89
Muller, S.90
Spooner, W.91
Narechania, A.92
Ren, L.93
Wei, S.94
Kumari, S.95
Faga, B.96
Levy, M.J.97
McMahan, L.98
more..
-
55
-
-
0033136093
-
13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors
-
Takeda, S., Sugimoto, K., Otsuki, H., and Hirochika, H. (1999). 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors. Plant J. 18, 383-393.
-
(1999)
Plant J.
, vol.18
, pp. 383-393
-
-
Takeda, S.1
Sugimoto, K.2
Otsuki, H.3
Hirochika, H.4
-
56
-
-
84891713248
-
Epigenomic consequences of immortalized plant cell suspension culture
-
doi: 10.1371/journal.pbio.0060302
-
Tanurdzic, M., Vaughn, M. W., Jiang, H., Lee, T. J., Slotkin, R. K., Sosinski, B., Thompson, W. F., Doerge, R. W., and Martienssen, R. A. (2008). Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol. 6, e302. doi: 10.1371/journal.pbio.0060302
-
(2008)
PLoS Biol.
, vol.6
-
-
Tanurdzic, M.1
Vaughn, M.W.2
Jiang, H.3
Lee, T.J.4
Slotkin, R.K.5
Sosinski, B.6
Thompson, W.F.7
Doerge, R.W.8
Martienssen, R.A.9
-
57
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24, 4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
58
-
-
0036235358
-
Construction and characterization of a deep-coverage bacterial artificial chromosome library for maize
-
Tomkins, J. P., Davis, G., Main, D., Duru, N., Musket, T., Goicoechea, J. L., Frisch, D. A., Coe, E. H., and Wing, R. A. (2002). Construction and characterization of a deep-coverage bacterial artificial chromosome library for maize. Crop Sci. 42, 928-933.
-
(2002)
Crop Sci.
, vol.42
, pp. 928-933
-
-
Tomkins, J.P.1
Davis, G.2
Main, D.3
Duru, N.4
Musket, T.5
Goicoechea, J.L.6
Frisch, D.A.7
Coe, E.H.8
Wing, R.A.9
-
59
-
-
77958149797
-
Transcriptional activity of transposable elements in maize
-
doi: 10.1186/1471-2164-11-601
-
Vicient, C. M. (2010). Transcriptional activity of transposable elements in maize. BMC Genomics 11, 601. doi: 10.1186/1471-2164-11-601
-
(2010)
BMC Genomics
, vol.11
, pp. 601
-
-
Vicient, C.M.1
-
60
-
-
27944447300
-
Mx-rMx, a family of interacting transposons in the growing hAT superfamily of maize
-
Xu, Z., and Dooner, H. K. (2005). Mx-rMx, a family of interacting transposons in the growing hAT superfamily of maize. Plant Cell 17, 375-388.
-
(2005)
Plant Cell
, vol.17
, pp. 375-388
-
-
Xu, Z.1
Dooner, H.K.2
-
61
-
-
2442669429
-
Jittery, a Mutator distant relative with a paradoxical mobile behavior: Excision without reinsertion
-
Xu, Z., Yan, X., Maurais, S., Fu, H., O'Brien, D. G., Mottinger, J., and Dooner, H. K. (2004). Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion. Plant Cell 16, 1105-1114.
-
(2004)
Plant Cell
, vol.16
, pp. 1105-1114
-
-
Xu, Z.1
Yan, X.2
Maurais, S.3
Fu, H.4
O'Brien, D.G.5
Mottinger, J.6
Dooner, H.K.7
-
62
-
-
0037474126
-
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
-
Zilberman, D., Cao, X., and Jacobsen, S. E. (2003). ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 299, 716-719.
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.E.3
-
63
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman, D., Gehring, M., Tran, R. K., Ballinger, T., and Henikoff, S. (2007). Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet. 39, 61-69.
-
(2007)
Nat. Genet.
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
Ballinger, T.4
Henikoff, S.5
|