An integrated chip capable of performing sample pretreatment and nucleic acid amplification for HIV-1 detection

Biosensors and Bioelectronics

Volumn 41, Issue 1, 2013, Pages 484-491

  Wang, Jung Hao ^a   Cheng, Lie ^b   Wang, Chih Hung ^a   Ling, Wei Shuo ^b   Wang, Shainn Wei ^b   Lee, Gwo Bin ^a  

^a NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^b NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

HIV 1; Microfluidic; Nucleic acid amplification; PCR; Sample pretreatment

Indexed keywords

AUTOMATED DIAGNOSIS; CELL LYSIS; CODING REGION; DNA FRAGMENT; HIV-1; HUMAN IMMUNODEFICIENCY VIRUS-1; INFECTED CELLS; INTEGRATED MICROFLUIDIC SYSTEMS; INTEGRATED OPTICAL SYSTEMS; MICRO FLUIDIC SYSTEM; OPTICAL DETECTION; PCR; PRIMER SETS; PROMOTER REGION; REAL-TIME DETECTION; SAMPLE PRETREATMENT; SIMULTANEOUS DETECTION; T CELLS;

CELL CULTURE; DNA; DNA SEQUENCES; FLUIDIC DEVICES; MICROFLUIDICS; ORGANIC ACIDS;

POLYMERASE CHAIN REACTION;

VIRUS DNA; DNA; DNA FRAGMENT;

ARTICLE; CONTROLLED STUDY; CYTOLYSIS; DNA EXTRACTION; DNA FRAGMENTATION; GENE AMPLIFICATION; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; LEUKEMIA CELL LINE; MICROCHIP ANALYSIS; MICROFLUIDIC ANALYSIS; NUCLEIC ACID AMPLIFICATION; POLYMERASE CHAIN REACTION; PROMOTER REGION; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; VIRUS CELL INTERACTION; VIRUS DETECTION; ANIMAL CELL; AUTOMATION; CLINICAL PROTOCOL; DIAGNOSTIC ACCURACY; DNA SEQUENCE; FETUS; HIV RAPID TEST; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; INT GENE; MICROFLUIDICS; NONHUMAN; OPTICAL INSTRUMENTATION; PREVALENCE; TAT GENE; VIRUS GENE; VIRUS STRAIN; VPR GENE; CELL FRACTIONATION; DNA MICROARRAY; EQUIPMENT; EQUIPMENT DESIGN; EQUIPMENT FAILURE; GENETIC PROCEDURES; GENETICS; HUMAN; ISOLATION AND PURIFICATION; REPRODUCIBILITY; SYSTEM ANALYSIS;

HUMAN IMMUNODEFICIENCY VIRUS 1;

BIOSENSING TECHNIQUES; CELL FRACTIONATION; DNA, VIRAL; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; HIV-1; HUMANS; MICROFLUIDIC ANALYTICAL TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SYSTEMS INTEGRATION;

EID: 84870777027     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2012.09.011     Document Type: Article

References (44)

1. Arien K.K., Vanham G., Arts E.J. Nature reviews Microbiology 2007, 5(2):141-151.
2. Auroux P.A., Koc Y., deMello A., Manz A., Day P.J.R. Lab on a Chip 2004, 4(6):534-546.
3. Ayouba A., Souquieres S., Njinku B., Martin P.M., Muller-Trutwin M.C., Roques P., Barre-Sinoussi F., Mauclere P., Simon F., Nerrienet E. AIDS (London, England) 2000, 14(16):2623-2625.
4. Bartolo I., Rocha C., Bartolomeu J., Gama A., Marcelino R., Fonseca M., Mendes A., Epalanga M., Silva P.C., Taveira N. Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 2009, 9(4):672-682.
5. Blight K.J., McKeating J.A., Rice C.M. Journal of Virology 2002, 76(24):13001-13014.
6. Buonaguro L., Tornesello M.L., Buonaguro F.M. Journal of Virology 2007, 81(19):10209-10219.
7. Calmy A., Ford N., Hirschel B., Reynolds S.J., Lynen L., Goemaere E., de la Vega F.G., Perrin L., Rodriguez W. Clinical Infectious Diseases 2007, 44(1):128-134.
8. Chen Y.J., Huang Y.H., Chuang S.Y., Kao D.Y., Lan Y.C., Yang J.Y., Chen Y.M. Journal of Acquired Immune Deficiency Syndromes 2010, 53(4):425-439.
9. Cheng X., Chen G., Rodriguez W. Analytical and Bioanalytical Chemistry 2009, 393(2):487-501.
10. Daskalakis D. Topics in Antiviral Medicine 2011, 19(1):18-22.
11. de Lind van Wijngaarden J.W., Brown T., Girault P., Sarkar S., van Griensven F. Sexually Transmitted Diseases 2009, 36(5):319-324.
12. Espy M.J., Uhl J.R., Sloan L.M., Buckwalter S.P., Jones M.F., Vetter E.A., Yao J.D.C., Wengenack N.L., Rosenblatt J.E., Cockerill F.R., Smith T.F. Clinical Microbiology Reviews 2006, 19(1):165-256.
13. Fields B.N., Knipe D.M., Howley P.M., Griffin D.E. Fields Virology 2001, Lippincott Williams & Wilkins, Philadelphia. fourth ed.
14. Fisher A.G., Collalti E., Ratner L., Gallo R.C., Wong-Staal F. Nature 1985, 316(6025):262-265.
15. Gurtler L.G., Hauser P.H., Eberle J., von Brunn A., Knapp S., Zekeng L., Tsague J.M., Kaptue L. Journal of Virology 1994, 68(3):1581-1585.
16. Haukanes B.-I., Kvam C. Nature Biotechnology 1993, 11(1):60-63.
17. Hawkins T.L., O'Connor-Morin T., Roy A., Santillan C. Nucleic Acids Research 1994, 22(21):4543-4544.
18. Lan Y.C., Elbeik T., Dileanis J., Ng V., Chen Y.J., Leu H.S., Cheng S.H., Wong J.C., Wong W.W., Chen Y.M. Journal of Medical Virology 2008, 80(2):183-191.
19. Lee C., Kim J., Shin S.G., Hwang S. Journal of Biotechnology 2006, 123(3):273-280.
20. Ling A.E., Robbins K.E., Brown T.M., Dunmire V., Thoe S.Y., Wong S.Y., Leo Y.S., Teo D., Gallarda J., Phelps B., Chamberland M.E., Busch M.P., Folks T.M., Kalish M.L. Journal of the American Medical Association 2000, 284(2):210-214.
21. Liu J.Y., Lin H.H., Liu Y.C., Lee S.S., Chen Y.L., Hung C.C., Ko W.C., Huang C.K., Lai C.H., Chen Y.S., Shih Y.L., Chung H.C., Liang S.H., Lin J.N. Clinical Infectious Diseases 2008, 46(11):1761-1768.
22. Liu Y., Rauch C.B., Stevens R.L., Lenigk R., Yang J., Rhine D.B., Grodzinski P. Analytical Chemistry 2002, 74(13):3063-3070.
23. Maritz J., Preiser W., van Zyl G.U. Journal of Clinical Virology 2012, 53(2):106-109.
24. McCutchan F.E. Journal of Medical Virology 2006, 78(1):S7-S12.
25. Miltenyi S., Müller W., Weichel W., Radbruch A. Cytometry 1990, 11(2):231-238.
26. Nowak M. Nature 1990, 347(6293):522.
27. Owen S.M. Current Opinion in HIV and AIDS 2012, 7(2):125-130.
28. Oyugi J.H., Byakika-Tusiime J., Charlebois E.D., Kityo C., Mugerwa R., Mugyenyi P., Bangsberg D.R. JAIDS Journal of Acquired Immune Deficiency Syndromes 2004, 36(5):1100-1102.
29. Plesa G., Dai J., Baytop C., Riley J.L., June C.H., O'Doherty U. Journal of Virology 2007, 81(24):13938-13942.
30. Ponde R.A. Archives of Virology 2011, 156(11):2085-2090.
31. Richmond J.F.L., Mustafa F., Lu S., Santoro J.C., Weng J., O'connell M., Fenyö E.M., Hurwitz J.L., Montefiori D.C., Robinson H.L. Virology 1997, 230(2):265-274.
32. Rouet F., Ekouevi D.K., Chaix M.-L., Burgard M., Inwoley A., Tony T.D.A., Danel C., Anglaret X., Leroy V., Msellati P., Dabis F., Rouzioux C. Journal of Clinical Microbiology 2005, 43(6):2709-2717.
33. Safarik I., Safarikova M. Journal of Chromatography B: Biomedical Sciences and Applications 1999, 722(1-2):33-53.
34. Shedlock D.J., Silvestri G., Weiner D.B. Nature Reviews Immunology 2009, 9(10):717-728.
35. Shibata R., Kawamura M., Sakai H., Hayami M., Ishimoto A., Adachi A. Journal of Virology 1991, 65(7):3514-3520.
36. Simon F., Mauclere P., Roques P., Loussert-Ajaka I., Muller-Trutwin M.C., Saragosti S., Georges-Courbot M.C., Barre-Sinoussi F., Brun-Vezinet F. Nature Medicine 1998, 4(9):1032-1037.
37. Suzuki T., Ishii K., Aizaki H., Wakita T. Advanced Drug Delivery Reviews 2007, 59(12):1200-1212.
38. Takebe Y., Uenishi R., Li X. Advances in Pharmacology 2008, 56:1-25.
39. UNAIDS, 2011 Global Report. Global HIV/AIDS Response. In: Margaret Chan, M.S., Anthony Lake (Eds.), Epidemic Update and Health Sector Progress Towards Universal Access. UNAIDS.
40. Wittwer C.T., Herrmann M.G., Moss A.A., Rasmussen R.P. BioTechniques 1997, 22(1):130-138.
41. Yang S.-Y., Cheng F.-Y., Yeh C.-S., Lee G.-B. Microfluidics and Nanofluidics 2010, 8(3):303-311.
42. Yoder K.E., Fishel R. Journal of Virological Methods 2006, 138(1-2):201-206.
43. Zhang C., Xing D. Nucleic Acids Research 2007, 35(13):4223-4237.
44. Zhang C., Xu J., Ma W., Zheng W. Biotechnology Advances 2006, 24(3):243-284.