메뉴 건너뛰기




Volumn 53, Issue 12, 2012, Pages 2101-2116

Reference genes for high-throughput quantitative reverse transcription-PCR analysis of gene expression in organs and tissues of eucalyptus grown in various environmental conditions

Author keywords

Abiotic stress; Eucalyptus; Gene expression; Normalization; Reference genes; Xylem

Indexed keywords

PRIMER DNA;

EID: 84870768419     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcs152     Document Type: Article
Times cited : (55)

References (41)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen, C.L., Jensen, J.L. and Orntoft, T.F. (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 64: 5245-5250.
    • (2004) Cancer Res , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 2
    • 77954588784 scopus 로고    scopus 로고
    • Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data
    • Artico, S., Nardeli, S.M., Brilhante, O., Grossi-de-Sa, M.F. and Alves-Ferreira, M. (2010) Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data. BMC Plant Biol. 10: 49.
    • (2010) BMC Plant Biol , vol.10 , pp. 49
    • Artico, S.1    Nardeli, S.M.2    Brilhante, O.3    Grossi-De-Sa, M.F.4    Alves-Ferreira, M.5
  • 3
  • 4
    • 77950925983 scopus 로고    scopus 로고
    • Selection of endogenous genes for gene expression studies in Eucalyptus under biotic (Puccinia psidii) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR
    • Boava, L.P., Laia, M.L., Jacob, T.R., Dabbas, K.M., Goncalves, J.F., Ferro, J.A. et al. (2010) Selection of endogenous genes for gene expression studies in Eucalyptus under biotic (Puccinia psidii) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR. BMC Res. Notes 3: 43.
    • (2010) BMC Res. Notes , vol.3 , pp. 43
    • Boava, L.P.1    Laia, M.L.2    Jacob, T.R.3    Dabbas, K.M.4    Goncalves, J.F.5    Ferro, J.A.6
  • 5
    • 0347599058 scopus 로고    scopus 로고
    • Lignins and lignocellulosics: A better control of synthesis for new and improved uses
    • Boudet, A.M., Kajita, S., Grima-Pettenati, J. and Goffner, D. (2003) Lignins and lignocellulosics: a better control of synthesis for new and improved uses. Trends Plant Sci. 8: 576-581.
    • (2003) Trends Plant Sci , vol.8 , pp. 576-581
    • Boudet, A.M.1    Kajita, S.2    Grima-Pettenati, J.3    Goffner, D.4
  • 6
    • 5444258598 scopus 로고    scopus 로고
    • Validating internal controls for quantitative plant gene expression studies
    • Brunner, A.M., Yakovlev, I.A. and Strauss, S.H. (2004) Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol. 4: 14.
    • (2004) BMC Plant Biol , vol.4 , pp. 14
    • Brunner, A.M.1    Yakovlev, I.A.2    Strauss, S.H.3
  • 7
    • 64149097786 scopus 로고    scopus 로고
    • The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
    • Bustin, S.A., Benes, V., Garson, J.A., Hellemans, J., Huggett, J., Kubista, M. et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem. 55: 611-622.
    • (2009) Clin. Chem , vol.55 , pp. 611-622
    • Bustin, S.A.1    Benes, V.2    Garson, J.A.3    Hellemans, J.4    Huggett, J.5    Kubista, M.6
  • 8
    • 84870779678 scopus 로고    scopus 로고
    • Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla-grandis evaluated by RNA-seq technology
    • Camargo, E., Costa, L., Soler, M., Salazar, M., Lepikson, J., Gonçalves, D. et al. (2012) Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla-grandis evaluated by RNA-seq technology. BMC Proc. 5(Suppl 7): P106.
    • (2012) BMC Proc , vol.5 , Issue.SUPPL. 7
    • Camargo, E.1    Costa, L.2    Soler, M.3    Salazar, M.4    Lepikson, J.5    Gonçalves, D.6
  • 9
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski, T., Stitt, M., Altmann, T., Udvardi, M.K. and Scheible, W.R. (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139: 5-17.
    • (2005) Plant Physiol , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 10
    • 77956633353 scopus 로고    scopus 로고
    • Reference gene selection for quantitative reverse transcription- polymerase chain reaction normalization during in vitro adventitious rooting in Eucalyptus globulus Labill
    • de Almeida, M.R., Ruedell, C.M., Ricachenevsky, F.K., Sperotto, R.A., Pasquali, G. and Fett-Neto, A.G. (2010) Reference gene selection for quantitative reverse transcription-polymerase chain reaction normalization during in vitro adventitious rooting in Eucalyptus globulus Labill. BMC Mol. Biol. 11: 73.
    • (2010) BMC Mol. Biol , vol.11 , pp. 73
    • De Almeida, M.R.1    Ruedell, C.M.2    Ricachenevsky, F.K.3    Sperotto, R.A.4    Pasquali, G.5    Fett-Neto, A.G.6
  • 12
    • 33846934729 scopus 로고    scopus 로고
    • Transcriptional regulation in wood formation
    • Demura, T. and Fukuda, H. (2007) Transcriptional regulation in wood formation. Trends Plant Sci. 12: 64-70.
    • (2007) Trends Plant Sci , vol.12 , pp. 64-70
    • Demura, T.1    Fukuda, H.2
  • 13
    • 77649235913 scopus 로고    scopus 로고
    • How to do successful gene expression analysis using real-time PCR
    • Derveaux, S., Vandesompele, J. and Hellemans, J. (2010) How to do successful gene expression analysis using real-time PCR. Methods 50: 227-230.
    • (2010) Methods , vol.50 , pp. 227-230
    • Derveaux, S.1    Vandesompele, J.2    Hellemans, J.3
  • 14
    • 58549086530 scopus 로고    scopus 로고
    • Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process
    • Exposito-Rodriguez, M., Borges, A.A., Borges-Perez, A. and Perez, J.A. (2008) Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. BMC Plant Biol. 8: 131.
    • (2008) BMC Plant Biol , vol.8 , pp. 131
    • Exposito-Rodriguez, M.1    Borges, A.A.2    Borges-Perez, A.3    Perez, J.A.4
  • 15
    • 78349309345 scopus 로고    scopus 로고
    • Validation of reference genes for real-time qRT-PCR normalization during cold acclimation in Eucalyptus globulus
    • Fernández, M., Villarroel, C., Balbontín, C. and Valenzuela, S. (2010) Validation of reference genes for real-time qRT-PCR normalization during cold acclimation in Eucalyptus globulus. Trees-Struct Funct. 24: 1109-1116.
    • (2010) Trees-Struct Funct , vol.24 , pp. 1109-1116
    • Fernández, M.1    Villarroel, C.2    Balbontín, C.3    Valenzuela, S.4
  • 16
    • 33646696869 scopus 로고    scopus 로고
    • Transcript profiling of a xylem vs phloem cDNA subtractive library identifies new genes expressed during xylogenesis in Eucalyptus
    • Foucart, C., Paux, E., Ladouce, N., San-Clemente, H., Grima-Pettenati, J. and Sivadon, P. (2006) Transcript profiling of a xylem vs phloem cDNA subtractive library identifies new genes expressed during xylogenesis in Eucalyptus. New Phytol. 170: 739-752.
    • (2006) New Phytol , vol.170 , pp. 739-752
    • Foucart, C.1    Paux, E.2    Ladouce, N.3    San-Clemente, H.4    Grima-Pettenati, J.5    Sivadon, P.6
  • 18
    • 27144549989 scopus 로고    scopus 로고
    • EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis
    • Goicoechea, M., Lacombe, E., Legay, S., Mihaljevic, S., Rech, P., Jauneau, A. et al. (2005) EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis. Plant J. 43: 553-567.
    • (2005) Plant J , vol.43 , pp. 553-567
    • Goicoechea, M.1    Lacombe, E.2    Legay, S.3    Mihaljevic, S.4    Rech, P.5    Jauneau, A.6
  • 20
    • 67650930085 scopus 로고    scopus 로고
    • Normalization of qRT-PCR data: The necessity of adopting a systematic, experimental conditions-specific, validation of references
    • Guenin, S., Mauriat, M., Pelloux, J., Van Wuytswinkel, O., Bellini, C. and Gutierrez, L. (2009) Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. J. Exp. Bot. 60: 487-493.
    • (2009) J. Exp. Bot , vol.60 , pp. 487-493
    • Guenin, S.1    Mauriat, M.2    Pelloux, J.3    Van Wuytswinkel, O.4    Bellini, C.5    Gutierrez, L.6
  • 21
    • 77951912210 scopus 로고    scopus 로고
    • Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst
    • Guo, G., Huss, M., Tong, G.Q., Wang, C., Li Sun, L., Clarke, N.D. et al. (2010) Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev. Cell 18: 675-685.
    • (2010) Dev. Cell , vol.18 , pp. 675-685
    • Guo, G.1    Huss, M.2    Tong, G.Q.3    Wang, C.4    Li Sun, L.5    Clarke, N.D.6
  • 22
    • 47249141242 scopus 로고    scopus 로고
    • The lack of a systematic validation of reference genes: A serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants
    • Gutierrez, L., Mauriat, M., Guenin, S., Pelloux, J., Lefebvre, J.F., Louvet, R. et al. (2008a) The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnol. J. 6: 609-618.
    • (2008) Plant Biotechnol. J , vol.6 , pp. 609-618
    • Gutierrez, L.1    Mauriat, M.2    Guenin, S.3    Pelloux, J.4    Lefebvre, J.F.5    Louvet, R.6
  • 24
    • 77958558578 scopus 로고    scopus 로고
    • EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar
    • Legay, S., Sivadon, P., Blervacq, A.S., Pavy, N., Baghdady, A., Tremblay, L. et al. (2010) EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar. New Phytol. 188: 774-786.
    • (2010) New Phytol , vol.188 , pp. 774-786
    • Legay, S.1    Sivadon, P.2    Blervacq, A.S.3    Pavy, N.4    Baghdady, A.5    Tremblay, L.6
  • 26
    • 78650048926 scopus 로고    scopus 로고
    • Two EguCBF1 genes overexpressed in Eucalyptus display a different impact on stress tolerance and plant development
    • Navarro, M., Ayax, C., Martinez, Y., Laur, J., El Kayal, W., Marque, C. et al. (2011) Two EguCBF1 genes overexpressed in Eucalyptus display a different impact on stress tolerance and plant development. Plant Biotechnol. J. 9: 50-63.
    • (2011) Plant Biotechnol. J , vol.9 , pp. 50-63
    • Navarro, M.1    Ayax, C.2    Martinez, Y.3    Laur, J.4    El Kayal, W.5    Marque, C.6
  • 27
    • 79952202673 scopus 로고    scopus 로고
    • Advancing Eucalyptus genomics: Identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
    • Paiva, J.A.P., Prat, E., Vautrin, S., Santos, M.D., San-Clemente, H., Brommonschenkel, S. et al. (2011) Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. BMC Genomics 12: 137.
    • (2011) BMC Genomics , vol.12 , pp. 137
    • Paiva, J.A.P.1    Prat, E.2    Vautrin, S.3    Santos, M.D.4    San-Clemente, H.5    Brommonschenkel, S.6
  • 28
  • 30
    • 12544252733 scopus 로고    scopus 로고
    • Identification of genes preferentially expressed during wood formation in Eucalyptus
    • Paux, E., Tamasloukht, M., Ladouce, N., Sivadon, P. and Grima-Pettenati, J. (2004) Identification of genes preferentially expressed during wood formation in Eucalyptus. Plant Mol. Biol. 55: 263-280.
    • (2004) Plant Mol. Biol , vol.55 , pp. 263-280
    • Paux, E.1    Tamasloukht, M.2    Ladouce, N.3    Sivadon, P.4    Grima-Pettenati, J.5
  • 31
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29: e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 33
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • Reid, K.E., Olsson, N., Schlosser, J., Peng, F. and Lund, S.T. (2006) An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol. 6: 27.
    • (2006) BMC Plant Biol , vol.6 , pp. 27
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5
  • 35
    • 33750295976 scopus 로고    scopus 로고
    • Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
    • Silver, N., Best, S., Jiang, J. and Thein, S.L. (2006) Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC Mol. Biol. 7: 33.
    • (2006) BMC Mol. Biol , vol.7 , pp. 33
    • Silver, N.1    Best, S.2    Jiang, J.3    Thein, S.L.4
  • 37
    • 45849087630 scopus 로고    scopus 로고
    • High throughput gene expression measurement with real time PCR in a microfluidic dynamic array
    • Spurgeon, S.L., Jones, R.C. and Ramakrishnan, R. (2008) High throughput gene expression measurement with real time PCR in a microfluidic dynamic array. PLoS One 3: e1662.
    • (2008) PLoS One , vol.3
    • Spurgeon, S.L.1    Jones, R.C.2    Ramakrishnan, R.3
  • 38
    • 57749111976 scopus 로고    scopus 로고
    • Eleven golden rules of quantitative RT-PCR
    • Udvardi, M.K., Czechowski, T. and Scheible, W.R. (2008) Eleven golden rules of quantitative RT-PCR. Plant Cell 20: 1736-1737.
    • (2008) Plant Cell , vol.20 , pp. 1736-1737
    • Udvardi, M.K.1    Czechowski, T.2    Scheible, W.R.3
  • 39
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034
    • Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A. et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3: RESEARCH0034.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6
  • 40
    • 80055114666 scopus 로고    scopus 로고
    • RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus
    • Villar, E., Klopp, C., Noirot, C., Novaes, E., Kirst, M., Plomion, C. et al. (2011) RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus. BMC Genomics 12: 538.
    • (2011) BMC Genomics , vol.12 , pp. 538
    • Villar, E.1    Klopp, C.2    Noirot, C.3    Novaes, E.4    Kirst, M.5    Plomion, C.6
  • 41
    • 78149416568 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time polymerase chain reaction in Populus
    • Xu, M., Zhang, B., Su, X., Zhang, S. and Huang, M. (2010) Reference gene selection for quantitative real-time polymerase chain reaction in Populus. Anal. Biochem. 408: 337-339.
    • (2010) Anal. Biochem , vol.408 , pp. 337-339
    • Xu, M.1    Zhang, B.2    Su, X.3    Zhang, S.4    Huang, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.