-
1
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
Andersen, C.L., Jensen, J.L. and Orntoft, T.F. (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 64: 5245-5250.
-
(2004)
Cancer Res
, vol.64
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Orntoft, T.F.3
-
2
-
-
77954588784
-
Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data
-
Artico, S., Nardeli, S.M., Brilhante, O., Grossi-de-Sa, M.F. and Alves-Ferreira, M. (2010) Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data. BMC Plant Biol. 10: 49.
-
(2010)
BMC Plant Biol
, vol.10
, pp. 49
-
-
Artico, S.1
Nardeli, S.M.2
Brilhante, O.3
Grossi-De-Sa, M.F.4
Alves-Ferreira, M.5
-
3
-
-
58149307466
-
QuantPrime-A flexible tool for reliable highthroughput primer design for quantitative PCR
-
Arvidsson, S., Kwasniewski, M., Riano-Pachon, D.M. and Mueller-Roeber, B. (2008) QuantPrime-a flexible tool for reliable highthroughput primer design for quantitative PCR. BMC Bioinformatics 9: 465.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 465
-
-
Arvidsson, S.1
Kwasniewski, M.2
Riano-Pachon, D.M.3
Mueller-Roeber, B.4
-
4
-
-
77950925983
-
Selection of endogenous genes for gene expression studies in Eucalyptus under biotic (Puccinia psidii) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR
-
Boava, L.P., Laia, M.L., Jacob, T.R., Dabbas, K.M., Goncalves, J.F., Ferro, J.A. et al. (2010) Selection of endogenous genes for gene expression studies in Eucalyptus under biotic (Puccinia psidii) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR. BMC Res. Notes 3: 43.
-
(2010)
BMC Res. Notes
, vol.3
, pp. 43
-
-
Boava, L.P.1
Laia, M.L.2
Jacob, T.R.3
Dabbas, K.M.4
Goncalves, J.F.5
Ferro, J.A.6
-
5
-
-
0347599058
-
Lignins and lignocellulosics: A better control of synthesis for new and improved uses
-
Boudet, A.M., Kajita, S., Grima-Pettenati, J. and Goffner, D. (2003) Lignins and lignocellulosics: a better control of synthesis for new and improved uses. Trends Plant Sci. 8: 576-581.
-
(2003)
Trends Plant Sci
, vol.8
, pp. 576-581
-
-
Boudet, A.M.1
Kajita, S.2
Grima-Pettenati, J.3
Goffner, D.4
-
6
-
-
5444258598
-
Validating internal controls for quantitative plant gene expression studies
-
Brunner, A.M., Yakovlev, I.A. and Strauss, S.H. (2004) Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol. 4: 14.
-
(2004)
BMC Plant Biol
, vol.4
, pp. 14
-
-
Brunner, A.M.1
Yakovlev, I.A.2
Strauss, S.H.3
-
7
-
-
64149097786
-
The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
-
Bustin, S.A., Benes, V., Garson, J.A., Hellemans, J., Huggett, J., Kubista, M. et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem. 55: 611-622.
-
(2009)
Clin. Chem
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
Kubista, M.6
-
8
-
-
84870779678
-
Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla-grandis evaluated by RNA-seq technology
-
Camargo, E., Costa, L., Soler, M., Salazar, M., Lepikson, J., Gonçalves, D. et al. (2012) Effects of nitrogen fertilization on global xylem transcript profiling of Eucalyptus urophylla-grandis evaluated by RNA-seq technology. BMC Proc. 5(Suppl 7): P106.
-
(2012)
BMC Proc
, vol.5
, Issue.SUPPL. 7
-
-
Camargo, E.1
Costa, L.2
Soler, M.3
Salazar, M.4
Lepikson, J.5
Gonçalves, D.6
-
9
-
-
32644481938
-
Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
-
Czechowski, T., Stitt, M., Altmann, T., Udvardi, M.K. and Scheible, W.R. (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139: 5-17.
-
(2005)
Plant Physiol
, vol.139
, pp. 5-17
-
-
Czechowski, T.1
Stitt, M.2
Altmann, T.3
Udvardi, M.K.4
Scheible, W.R.5
-
10
-
-
77956633353
-
Reference gene selection for quantitative reverse transcription- polymerase chain reaction normalization during in vitro adventitious rooting in Eucalyptus globulus Labill
-
de Almeida, M.R., Ruedell, C.M., Ricachenevsky, F.K., Sperotto, R.A., Pasquali, G. and Fett-Neto, A.G. (2010) Reference gene selection for quantitative reverse transcription-polymerase chain reaction normalization during in vitro adventitious rooting in Eucalyptus globulus Labill. BMC Mol. Biol. 11: 73.
-
(2010)
BMC Mol. Biol
, vol.11
, pp. 73
-
-
De Almeida, M.R.1
Ruedell, C.M.2
Ricachenevsky, F.K.3
Sperotto, R.A.4
Pasquali, G.5
Fett-Neto, A.G.6
-
11
-
-
84857196761
-
Reference genes for the normalization of gene expression in eucalyptus species
-
de Oliveira, L.A., Breton, M.C., Bastolla, F.M., Camargo Sda, S., Margis, R., Frazzon, J. et al. (2012) Reference genes for the normalization of gene expression in eucalyptus species. Plant Cell Physiol. 53: 405-422.
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 405-422
-
-
De Oliveira, L.A.1
Breton, M.C.2
Bastolla, F.M.3
Camargo Sda, S.4
Margis, R.5
Frazzon, J.6
-
12
-
-
33846934729
-
Transcriptional regulation in wood formation
-
Demura, T. and Fukuda, H. (2007) Transcriptional regulation in wood formation. Trends Plant Sci. 12: 64-70.
-
(2007)
Trends Plant Sci
, vol.12
, pp. 64-70
-
-
Demura, T.1
Fukuda, H.2
-
13
-
-
77649235913
-
How to do successful gene expression analysis using real-time PCR
-
Derveaux, S., Vandesompele, J. and Hellemans, J. (2010) How to do successful gene expression analysis using real-time PCR. Methods 50: 227-230.
-
(2010)
Methods
, vol.50
, pp. 227-230
-
-
Derveaux, S.1
Vandesompele, J.2
Hellemans, J.3
-
14
-
-
58549086530
-
Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process
-
Exposito-Rodriguez, M., Borges, A.A., Borges-Perez, A. and Perez, J.A. (2008) Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process. BMC Plant Biol. 8: 131.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 131
-
-
Exposito-Rodriguez, M.1
Borges, A.A.2
Borges-Perez, A.3
Perez, J.A.4
-
15
-
-
78349309345
-
Validation of reference genes for real-time qRT-PCR normalization during cold acclimation in Eucalyptus globulus
-
Fernández, M., Villarroel, C., Balbontín, C. and Valenzuela, S. (2010) Validation of reference genes for real-time qRT-PCR normalization during cold acclimation in Eucalyptus globulus. Trees-Struct Funct. 24: 1109-1116.
-
(2010)
Trees-Struct Funct
, vol.24
, pp. 1109-1116
-
-
Fernández, M.1
Villarroel, C.2
Balbontín, C.3
Valenzuela, S.4
-
16
-
-
33646696869
-
Transcript profiling of a xylem vs phloem cDNA subtractive library identifies new genes expressed during xylogenesis in Eucalyptus
-
Foucart, C., Paux, E., Ladouce, N., San-Clemente, H., Grima-Pettenati, J. and Sivadon, P. (2006) Transcript profiling of a xylem vs phloem cDNA subtractive library identifies new genes expressed during xylogenesis in Eucalyptus. New Phytol. 170: 739-752.
-
(2006)
New Phytol
, vol.170
, pp. 739-752
-
-
Foucart, C.1
Paux, E.2
Ladouce, N.3
San-Clemente, H.4
Grima-Pettenati, J.5
Sivadon, P.6
-
17
-
-
47049103564
-
SAGE transcript profiling of the juvenile cambial region of Eucalyptus grandis
-
Gallo de Carvalho, M.C., Caldas, D.G., Carneiro, R.T., Moon, D.H., Salvatierra, G.R., Franceschini, L.M. et al. (2008) SAGE transcript profiling of the juvenile cambial region of Eucalyptus grandis. Tree Physiol. 28: 905-919.
-
(2008)
Tree Physiol
, vol.28
, pp. 905-919
-
-
Gallo De Carvalho, M.C.1
Caldas, D.G.2
Carneiro, R.T.3
Moon, D.H.4
Salvatierra, G.R.5
Franceschini, L.M.6
-
18
-
-
27144549989
-
EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis
-
Goicoechea, M., Lacombe, E., Legay, S., Mihaljevic, S., Rech, P., Jauneau, A. et al. (2005) EgMYB2, a new transcriptional activator from Eucalyptus xylem, regulates secondary cell wall formation and lignin biosynthesis. Plant J. 43: 553-567.
-
(2005)
Plant J
, vol.43
, pp. 553-567
-
-
Goicoechea, M.1
Lacombe, E.2
Legay, S.3
Mihaljevic, S.4
Rech, P.5
Jauneau, A.6
-
19
-
-
84856585935
-
Phytozome: A comparative platform for green plant genomics
-
Goodstein, D.M., Shu, S., Howson, R., Neupane, R., Hayes, R.D., Fazo, J. et al. (2011) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40: D1178-D1186.
-
(2011)
Nucleic Acids Res
, vol.40
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
-
20
-
-
67650930085
-
Normalization of qRT-PCR data: The necessity of adopting a systematic, experimental conditions-specific, validation of references
-
Guenin, S., Mauriat, M., Pelloux, J., Van Wuytswinkel, O., Bellini, C. and Gutierrez, L. (2009) Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. J. Exp. Bot. 60: 487-493.
-
(2009)
J. Exp. Bot
, vol.60
, pp. 487-493
-
-
Guenin, S.1
Mauriat, M.2
Pelloux, J.3
Van Wuytswinkel, O.4
Bellini, C.5
Gutierrez, L.6
-
21
-
-
77951912210
-
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst
-
Guo, G., Huss, M., Tong, G.Q., Wang, C., Li Sun, L., Clarke, N.D. et al. (2010) Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Dev. Cell 18: 675-685.
-
(2010)
Dev. Cell
, vol.18
, pp. 675-685
-
-
Guo, G.1
Huss, M.2
Tong, G.Q.3
Wang, C.4
Li Sun, L.5
Clarke, N.D.6
-
22
-
-
47249141242
-
The lack of a systematic validation of reference genes: A serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants
-
Gutierrez, L., Mauriat, M., Guenin, S., Pelloux, J., Lefebvre, J.F., Louvet, R. et al. (2008a) The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. Plant Biotechnol. J. 6: 609-618.
-
(2008)
Plant Biotechnol. J
, vol.6
, pp. 609-618
-
-
Gutierrez, L.1
Mauriat, M.2
Guenin, S.3
Pelloux, J.4
Lefebvre, J.F.5
Louvet, R.6
-
23
-
-
57749113093
-
Towards a systematic validation of references in real-time RT-PCR
-
Gutierrez, L., Mauriat, M., Pelloux, J., Bellini, C. and Van Wuytswinkel, O. (2008b) Towards a systematic validation of references in real-time RT-PCR. Plant Cell 20: 1734-1735.
-
(2008)
Plant Cell
, vol.20
, pp. 1734-1735
-
-
Gutierrez, L.1
Mauriat, M.2
Pelloux, J.3
Bellini, C.4
Van Wuytswinkel, O.5
-
24
-
-
77958558578
-
EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar
-
Legay, S., Sivadon, P., Blervacq, A.S., Pavy, N., Baghdady, A., Tremblay, L. et al. (2010) EgMYB1, an R2R3 MYB transcription factor from eucalyptus negatively regulates secondary cell wall formation in Arabidopsis and poplar. New Phytol. 188: 774-786.
-
(2010)
New Phytol
, vol.188
, pp. 774-786
-
-
Legay, S.1
Sivadon, P.2
Blervacq, A.S.3
Pavy, N.4
Baghdady, A.5
Tremblay, L.6
-
25
-
-
49249086079
-
Eucalyptus
-
Edited by Kole, C.R Springer, Heidelberg
-
Myburg, A.A., Potts, B.M., Marques, C.M.P., Kirst, M., Gion, J.M., Grattapaglia, D. et al. (2007) Eucalyptus. In Genome Mapping & Molecular Breeding in Plants. Edited by Kole, C.R. Springer, Heidelberg.
-
(2007)
Genome Mapping & Molecular Breeding in Plants
-
-
Myburg, A.A.1
Potts, B.M.2
Marques, C.M.P.3
Kirst, M.4
Gion, J.M.5
Grattapaglia, D.6
-
26
-
-
78650048926
-
Two EguCBF1 genes overexpressed in Eucalyptus display a different impact on stress tolerance and plant development
-
Navarro, M., Ayax, C., Martinez, Y., Laur, J., El Kayal, W., Marque, C. et al. (2011) Two EguCBF1 genes overexpressed in Eucalyptus display a different impact on stress tolerance and plant development. Plant Biotechnol. J. 9: 50-63.
-
(2011)
Plant Biotechnol. J
, vol.9
, pp. 50-63
-
-
Navarro, M.1
Ayax, C.2
Martinez, Y.3
Laur, J.4
El Kayal, W.5
Marque, C.6
-
27
-
-
79952202673
-
Advancing Eucalyptus genomics: Identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
-
Paiva, J.A.P., Prat, E., Vautrin, S., Santos, M.D., San-Clemente, H., Brommonschenkel, S. et al. (2011) Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. BMC Genomics 12: 137.
-
(2011)
BMC Genomics
, vol.12
, pp. 137
-
-
Paiva, J.A.P.1
Prat, E.2
Vautrin, S.3
Santos, M.D.4
San-Clemente, H.5
Brommonschenkel, S.6
-
28
-
-
79960854285
-
Induction of human neuronal cells by defined transcription factors
-
Pang, Z.P., Yang, N., Vierbuchen, T., Ostermeier, A., Fuentes, D.R., Yang, T.Q. et al. (2011) Induction of human neuronal cells by defined transcription factors. Nature 476: 220-223.
-
(2011)
Nature
, vol.476
, pp. 220-223
-
-
Pang, Z.P.1
Yang, N.2
Vierbuchen, T.3
Ostermeier, A.4
Fuentes, D.R.5
Yang, T.Q.6
-
29
-
-
21244481788
-
Transcript profiling of Eucalyptus xylem genes during tension wood formation
-
Paux, E., Carocha, V., Marques, C., Mendes de Sousa, A., Borralho, N., Sivadon, P. et al. (2005) Transcript profiling of Eucalyptus xylem genes during tension wood formation. New Phytol. 167: 89-100.
-
(2005)
New Phytol
, vol.167
, pp. 89-100
-
-
Paux, E.1
Carocha, V.2
Marques, C.3
Mendes De Sousa, A.4
Borralho, N.5
Sivadon, P.6
-
30
-
-
12544252733
-
Identification of genes preferentially expressed during wood formation in Eucalyptus
-
Paux, E., Tamasloukht, M., Ladouce, N., Sivadon, P. and Grima-Pettenati, J. (2004) Identification of genes preferentially expressed during wood formation in Eucalyptus. Plant Mol. Biol. 55: 263-280.
-
(2004)
Plant Mol. Biol
, vol.55
, pp. 263-280
-
-
Paux, E.1
Tamasloukht, M.2
Ladouce, N.3
Sivadon, P.4
Grima-Pettenati, J.5
-
31
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29: e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
33
-
-
33751234803
-
An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
-
Reid, K.E., Olsson, N., Schlosser, J., Peng, F. and Lund, S.T. (2006) An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol. 6: 27.
-
(2006)
BMC Plant Biol
, vol.6
, pp. 27
-
-
Reid, K.E.1
Olsson, N.2
Schlosser, J.3
Peng, F.4
Lund, S.T.5
-
34
-
-
65249113229
-
A new genomic resource dedicated to wood formation in Eucalyptus
-
Rengel, D., San Clemente, H., Servant, F., Ladouce, N., Paux, E., Wincker, P. et al. (2009) A new genomic resource dedicated to wood formation in Eucalyptus. BMC Plant Biol. 9: 36.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 36
-
-
Rengel, D.1
San Clemente, H.2
Servant, F.3
Ladouce, N.4
Paux, E.5
Wincker, P.6
-
35
-
-
33750295976
-
Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
-
Silver, N., Best, S., Jiang, J. and Thein, S.L. (2006) Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC Mol. Biol. 7: 33.
-
(2006)
BMC Mol. Biol
, vol.7
, pp. 33
-
-
Silver, N.1
Best, S.2
Jiang, J.3
Thein, S.L.4
-
36
-
-
0032186439
-
Eucalypt MADS-box genes expressed in developing flowers
-
Southerton, S.G., Marshall, H., Mouradov, A. and Teasdale, R.D. (1998) Eucalypt MADS-box genes expressed in developing flowers. Plant Physiol. 118: 365-372.
-
(1998)
Plant Physiol
, vol.118
, pp. 365-372
-
-
Southerton, S.G.1
Marshall, H.2
Mouradov, A.3
Teasdale, R.D.4
-
37
-
-
45849087630
-
High throughput gene expression measurement with real time PCR in a microfluidic dynamic array
-
Spurgeon, S.L., Jones, R.C. and Ramakrishnan, R. (2008) High throughput gene expression measurement with real time PCR in a microfluidic dynamic array. PLoS One 3: e1662.
-
(2008)
PLoS One
, vol.3
-
-
Spurgeon, S.L.1
Jones, R.C.2
Ramakrishnan, R.3
-
38
-
-
57749111976
-
Eleven golden rules of quantitative RT-PCR
-
Udvardi, M.K., Czechowski, T. and Scheible, W.R. (2008) Eleven golden rules of quantitative RT-PCR. Plant Cell 20: 1736-1737.
-
(2008)
Plant Cell
, vol.20
, pp. 1736-1737
-
-
Udvardi, M.K.1
Czechowski, T.2
Scheible, W.R.3
-
39
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
RESEARCH0034
-
Vandesompele, J., De Preter, K., Pattyn, F., Poppe, B., Van Roy, N., De Paepe, A. et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3: RESEARCH0034.
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
-
40
-
-
80055114666
-
RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus
-
Villar, E., Klopp, C., Noirot, C., Novaes, E., Kirst, M., Plomion, C. et al. (2011) RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus. BMC Genomics 12: 538.
-
(2011)
BMC Genomics
, vol.12
, pp. 538
-
-
Villar, E.1
Klopp, C.2
Noirot, C.3
Novaes, E.4
Kirst, M.5
Plomion, C.6
-
41
-
-
78149416568
-
Reference gene selection for quantitative real-time polymerase chain reaction in Populus
-
Xu, M., Zhang, B., Su, X., Zhang, S. and Huang, M. (2010) Reference gene selection for quantitative real-time polymerase chain reaction in Populus. Anal. Biochem. 408: 337-339.
-
(2010)
Anal. Biochem
, vol.408
, pp. 337-339
-
-
Xu, M.1
Zhang, B.2
Su, X.3
Zhang, S.4
Huang, M.5
|