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Volumn 7, Issue 12, 2012, Pages

Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases

Author keywords

[No Author keywords available]

Indexed keywords

FRESH WATER; RNA 18S;

EID: 84870748533     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0049090     Document Type: Article
Times cited : (20)

References (31)
  • 1
    • 0013487643 scopus 로고
    • Reticulamoeba gemmipara n. gen., n. sp., an "amoebo-flagellate" with reticulopodia and zoosporogenesis
    • Grell K, (1994) Reticulamoeba gemmipara n. gen., n. sp., an "amoebo-flagellate" with reticulopodia and zoosporogenesis. Arch Protistenkd 144: 55-61.
    • (1994) Arch Protistenkd , vol.144 , pp. 55-61
    • Grell, K.1
  • 2
    • 0029168807 scopus 로고
    • Reticulamoeba minor n. sp., and its reticulopodia
    • Grell K, (1995) Reticulamoeba minor n. sp., and its reticulopodia. Arch Protistenkd 145: 3-9.
    • (1995) Arch Protistenkd , vol.145 , pp. 3-9
    • Grell, K.1
  • 3
    • 61849133515 scopus 로고    scopus 로고
    • Untangling the phylogeny of amoeboid protists
    • Pawlowski J, Burki F, (2009) Untangling the phylogeny of amoeboid protists. J Eukaryot Microbiol 56: 16-25.
    • (2009) J Eukaryot Microbiol , vol.56 , pp. 16-25
    • Pawlowski, J.1    Burki, F.2
  • 4
    • 83055186835 scopus 로고    scopus 로고
    • The cell structure of the reticulopodial amoeba Filoreta marina Bass et Cavalier-Smith (Cercozoa)
    • Myl'nikov AP, Myl'nikov AA, (2011) The cell structure of the reticulopodial amoeba Filoreta marina Bass et Cavalier-Smith (Cercozoa). Inland Water Biology 4: 440-445.
    • (2011) Inland Water Biology , vol.4 , pp. 440-445
    • Myl'nikov, A.P.1    Myl'nikov, A.A.2
  • 5
    • 0042745989 scopus 로고    scopus 로고
    • The grazing potential of some unusual marine benthic amoebae feeding on bacteria
    • Rogerson A, Hannah F, Gothe G, (1996) The grazing potential of some unusual marine benthic amoebae feeding on bacteria. Europ J Protistol 32: 271-279.
    • (1996) Europ J Protistol , vol.32 , pp. 271-279
    • Rogerson, A.1    Hannah, F.2    Gothe, G.3
  • 6
    • 58149357448 scopus 로고    scopus 로고
    • Phylogeny of novel naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised
    • Bass D, Chao EE, Nikolaev S, Yubuki A, Ishida K, et al. (2009) Phylogeny of novel naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised. Protist 160: 75-109.
    • (2009) Protist , vol.160 , pp. 75-109
    • Bass, D.1    Chao, E.E.2    Nikolaev, S.3    Yubuki, A.4    Ishida, K.5
  • 7
    • 20444481378 scopus 로고    scopus 로고
    • Molecular screening of free-living microbial eukaryotes: diversity and distribution using a meta-analysis
    • Richards TA, Bass D, (2005) Molecular screening of free-living microbial eukaryotes: diversity and distribution using a meta-analysis. Curr Op Microbiol 8: 240-252.
    • (2005) Curr Op Microbiol , vol.8 , pp. 240-252
    • Richards, T.A.1    Bass, D.2
  • 8
    • 77956094384 scopus 로고    scopus 로고
    • Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA
    • Bråte J, Logares R, Berney C, Ree DK, Klaveness D, et al. (2010) Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. ISME J 4: 1144-1153.
    • (2010) ISME J , vol.4 , pp. 1144-1153
    • Bråte, J.1    Logares, R.2    Berney, C.3    Ree, D.K.4    Klaveness, D.5
  • 9
    • 84867740787 scopus 로고    scopus 로고
    • Diversity patterns and activity of uncultured flagellates unveiled with pyrosequencing
    • doi:10.1038/ismej.2012.36
    • Logares R, Audic S, Santini S, Pernice MC, de Vargas C, et al. (2012) Diversity patterns and activity of uncultured flagellates unveiled with pyrosequencing. ISME J doi:10.1038/ismej.2012.36.
    • (2012) ISME J
    • Logares, R.1    Audic, S.2    Santini, S.3    Pernice, M.C.4    de Vargas, C.5
  • 11
    • 77951908579 scopus 로고    scopus 로고
    • Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
    • Stoeck T, Bass D, Nebel M, Christen R, Jones MDM, et al. (2010) Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Molecular Ecology 19(s1): 21-31.
    • (2010) Molecular Ecology , vol.19 , Issue.s1 , pp. 21-31
    • Stoeck, T.1    Bass, D.2    Nebel, M.3    Christen, R.4    Jones, M.D.M.5
  • 12
    • 35348955355 scopus 로고    scopus 로고
    • Genotypic distribution of an indigenous model microorganism along an estuarine gradient
    • Hawkins RJ, Purdy KJ, (2007) Genotypic distribution of an indigenous model microorganism along an estuarine gradient. FEMS Microbiol Ecol 62: 187-194.
    • (2007) FEMS Microbiol Ecol , vol.62 , pp. 187-194
    • Hawkins, R.J.1    Purdy, K.J.2
  • 13
    • 2942711218 scopus 로고    scopus 로고
    • Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa)
    • Bass D, Cavalier-Smith T, (2004) Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa). Int J Syst Evol Microbiol 54: 2393-2404.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2393-2404
    • Bass, D.1    Cavalier-Smith, T.2
  • 15
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C, Preparata G, Saccone C, Serio G, (1984) A new method for calculating evolutionary substitution rates. J Mol Evol 20: 86-93.
    • (1984) J Mol Evol , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 16
    • 0025267792 scopus 로고
    • The general stochastic model of nucleotide substitution
    • Rodriguez F, Oliver JL, Marin A, Medina JR, (1990) The general stochastic model of nucleotide substitution. J Theor Biol 142: 485-501.
    • (1990) J Theor Biol , vol.142 , pp. 485-501
    • Rodriguez, F.1    Oliver, J.L.2    Marin, A.3    Medina, J.R.4
  • 17
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J, (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 18
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 19
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 20
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES3: Bayesian phylogenetic inference under mixed models
    • Ronquist F & Huelsenbeck JP, (2003) MRBAYES3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 21
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F, (2004) Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407-415.
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 23
    • 78651266825 scopus 로고    scopus 로고
    • Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
    • Sun S, Chen J, Li W, Altinatas I, Lin A, et al. (2011) Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. Nucl Acid Res 39 (suppl 1): D546-D551.
    • (2011) Nucl Acid Res , vol.39 , Issue.SUPPL. 1
    • Sun, S.1    Chen, J.2    Li, W.3    Altinatas, I.4    Lin, A.5
  • 25
    • 2542512417 scopus 로고    scopus 로고
    • The twighlight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
    • Nikolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, et al. (2004) The twighlight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. PNAS 101: 8066-8071.
    • (2004) PNAS , vol.101 , pp. 8066-8071
    • Nikolaev, S.I.1    Berney, C.2    Fahrni, J.F.3    Bolivar, I.4    Polet, S.5
  • 26
    • 33847322603 scopus 로고    scopus 로고
    • A molecular approach to identify active microbes in environmental eukaryote clone libraries
    • Stoeck T, Zuendorf A, Breiner H-W, Behnke A, (2007) A molecular approach to identify active microbes in environmental eukaryote clone libraries. Microb Ecol 53: 328-339.
    • (2007) Microb Ecol , vol.53 , pp. 328-339
    • Stoeck, T.1    Zuendorf, A.2    Breiner, H.-W.3    Behnke, A.4
  • 27
    • 84864111103 scopus 로고    scopus 로고
    • Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction
    • Koid A, Nelson WC, Mraz A, Heidelberg KB, (2012) Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction. Appl Environ Microbiol 78: 3958-3965.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 3958-3965
    • Koid, A.1    Nelson, W.C.2    Mraz, A.3    Heidelberg, K.B.4
  • 28
    • 78650781042 scopus 로고    scopus 로고
    • Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3
    • Gomez F, Moreira D, Benzerara K, Lopez-Garcia P, (2011) Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3. Environ Microbiol 13: 193-202.
    • (2011) Environ Microbiol , vol.13 , pp. 193-202
    • Gomez, F.1    Moreira, D.2    Benzerara, K.3    Lopez-Garcia, P.4
  • 29
    • 52149108935 scopus 로고    scopus 로고
    • Morphology and phylogeny of Sainouron acronematica sp. n. and the ultrastructural unity of Cercozoa
    • Cavalier-Smith T, Lewis R, Chao EE, Oates B, Bass D, (2008) Morphology and phylogeny of Sainouron acronematica sp. n. and the ultrastructural unity of Cercozoa. Protist 159: 591-620.
    • (2008) Protist , vol.159 , pp. 591-620
    • Cavalier-Smith, T.1    Lewis, R.2    Chao, E.E.3    Oates, B.4    Bass, D.5
  • 30
    • 67649449332 scopus 로고    scopus 로고
    • Helkesimastix marina n. sp. (Cercozoa: Sainouroidea superfam. n.) a gliding zooflagellate of novel ultrastructure and unusual ciliary behaviour
    • Cavalier-Smith T, Oates B, Lewis R, Chao EE, Bass D, (2009) Helkesimastix marina n. sp. (Cercozoa: Sainouroidea superfam. n.) a gliding zooflagellate of novel ultrastructure and unusual ciliary behaviour. Protist 160: 452-479.
    • (2009) Protist , vol.160 , pp. 452-479
    • Cavalier-Smith, T.1    Oates, B.2    Lewis, R.3    Chao, E.E.4    Bass, D.5
  • 31
    • 84862676601 scopus 로고    scopus 로고
    • Aggregative multicellularity evolved independently in the eukaryotic supergroup rhizaria
    • Brown MW, Kolisko M, Silberman JD, Roger AJ, (2012) Aggregative multicellularity evolved independently in the eukaryotic supergroup rhizaria. Curr Biol 22: 1123-1127.
    • (2012) Curr Biol , vol.22 , pp. 1123-1127
    • Brown, M.W.1    Kolisko, M.2    Silberman, J.D.3    Roger, A.J.4


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