메뉴 건너뛰기




Volumn 62, Issue 2, 2007, Pages 187-194

Genotypic distribution of an indigenous model microorganism along an estuarine gradient

Author keywords

Desulfobulbus; DGGE; Genotype distribution; Niche separation; Salinity

Indexed keywords

CHLORIDE; NITRATE; SULFATE; WATER;

EID: 35348955355     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2007.00376.x     Document Type: Article
Times cited : (19)

References (37)
  • 1
    • 0021283205 scopus 로고
    • The dependence of bacterial sulfate reduction on sulfate concentration in marine sediments
    • Boudreau BP Westrich JT (1984) The dependence of bacterial sulfate reduction on sulfate concentration in marine sediments. Geochim Cosmochim Acta 48: 2503 2516.
    • (1984) Geochim Cosmochim Acta , vol.48 , pp. 2503-2516
    • Boudreau, B.P.1    Westrich, J.T.2
  • 2
    • 35348957229 scopus 로고    scopus 로고
    • ade4: Analysis of Ecological Data: Exploratory and Euclidean methods I.
    • Chessel D, Dufour A-B Dray S (2007) ade4: Analysis of Ecological Data: Exploratory and Euclidean methods I.
    • (2007)
    • Chessel, D.1    Dufour, A.-B.2    Dray, S.3
  • 3
    • 33646544692 scopus 로고    scopus 로고
    • Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments
    • Cordova-Kreylos AL, Cao Y, Green PG et al 2006) Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Appl Environ Microbiol 72: 3357 3366.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3357-3366
    • Cordova-Kreylos, A.L.1    Cao, Y.2    Green, P.G.3    Al, E.4
  • 5
    • 0033909552 scopus 로고    scopus 로고
    • Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria
    • Daly K, Sharp RJ McCarthy AJ (2000) Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria. Microbiology 146: 1693 1705.
    • (2000) Microbiology , vol.146 , pp. 1693-1705
    • Daly, K.1    Sharp, R.J.2    McCarthy, A.J.3
  • 6
    • 18444372956 scopus 로고    scopus 로고
    • Nested PCR-denaturing gradient gel electrophoresis approach to determine the diversity of sulfate-reducing bacteria in complex microbial communities
    • Dar SA, Kuenen JG Muyzer G (2005) Nested PCR-denaturing gradient gel electrophoresis approach to determine the diversity of sulfate-reducing bacteria in complex microbial communities. Appl Environ Microbiol 71: 2325 2330.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2325-2330
    • Dar, S.A.1    Kuenen, J.G.2    Muyzer, G.3
  • 7
    • 0035163587 scopus 로고    scopus 로고
    • Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities
    • Dunbar J, Ticknor LO Kuske CR (2001) Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities. Appl Environ Microbiol 67: 190 197.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 190-197
    • Dunbar, J.1    Ticknor, L.O.2    Kuske, C.R.3
  • 8
    • 0025895588 scopus 로고
    • The linear PCR reaction: A simple and robust method for sequencing amplified rRNA genes
    • Embley TM (1991) The linear PCR reaction: a simple and robust method for sequencing amplified rRNA genes. Lett Appl Microbiol 13: 171 174.
    • (1991) Lett Appl Microbiol , vol.13 , pp. 171-174
    • Embley, T.M.1
  • 9
    • 0027036878 scopus 로고
    • What can ecologists learn from microbes: Life beneath a square centimetre of sediment surface
    • Fenchel T (1992) What can ecologists learn from microbes: life beneath a square centimetre of sediment surface. Funct Ecol 6: 499 507.
    • (1992) Funct Ecol , vol.6 , pp. 499-507
    • Fenchel, T.1
  • 11
    • 0032731671 scopus 로고    scopus 로고
    • Natural communities of Achromatium oxaliferum comprise genetically, morphologically, and ecologically distinct subpopulations
    • Gray ND, Howarth R, Rowan A, Pickup RW, Jones JG Head IM (1999) Natural communities of Achromatium oxaliferum comprise genetically, morphologically, and ecologically distinct subpopulations. Appl Environ Microbiol 65: 5089 5099.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5089-5099
    • Gray, N.D.1    Howarth, R.2    Rowan, A.3    Pickup, R.W.4    Jones, J.G.5    Head, I.M.6
  • 12
    • 0034121140 scopus 로고    scopus 로고
    • Sulfate-reducing bacteria methylate mercury at variable rates in pure culture and in marine sediments
    • King JK, Kostka JE, Frischer ME Saunders FM (2000) Sulfate-reducing bacteria methylate mercury at variable rates in pure culture and in marine sediments. Appl Environ Microbiol 66: 2430 2437.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2430-2437
    • King, J.K.1    Kostka, J.E.2    Frischer, M.E.3    Saunders, F.M.4
  • 13
    • 0036805252 scopus 로고    scopus 로고
    • Sulfate-reducing bacterial community response to carbon source amendments in contaminated aquifer microcosms
    • Kleikemper J, Pelz O, Schroth MH Zeyer J (2002) Sulfate-reducing bacterial community response to carbon source amendments in contaminated aquifer microcosms. FEMS Microbiol Ecol 42: 109 118.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 109-118
    • Kleikemper, J.1    Pelz, O.2    Schroth, M.H.3    Zeyer, J.4
  • 14
    • 0019517230 scopus 로고
    • Oxidation of short-chain fatty acids by sulfate-reducing bacteria in freshwater and marine sediments
    • Laanbroek HJ Pfennig N (1981) Oxidation of short-chain fatty acids by sulfate-reducing bacteria in freshwater and marine sediments. Arch Microbiol 128: 330 335.
    • (1981) Arch Microbiol , vol.128 , pp. 330-335
    • Laanbroek, H.J.1    Pfennig, N.2
  • 16
    • 0030618183 scopus 로고    scopus 로고
    • High nitrate, muddy estuaries as nitrogen sinks: The nitrogen budget of the River Colne estuary (United Kingdom)
    • Ogilvie B, Nedwell DB, Harrison RM, Robinson A Sage A (1997) High nitrate, muddy estuaries as nitrogen sinks: the nitrogen budget of the River Colne estuary (United Kingdom). Mar Ecol Prog Series 150: 217 228.
    • (1997) Mar Ecol Prog Series , vol.150 , pp. 217-228
    • Ogilvie, B.1    Nedwell, D.B.2    Harrison, R.M.3    Robinson, A.4    Sage, A.5
  • 17
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Øvreas L, Forney L, Daae FL Torsvik V (1997) Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl Environ Microbiol 63: 3367 3373.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3367-3373
    • Øvreas, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 19
    • 27644497707 scopus 로고    scopus 로고
    • Nucleic acid recovery from complex environmental samples
    • Purdy KJ (2005) Nucleic acid recovery from complex environmental samples. Meth Enzymol 397: 271 292.
    • (2005) Meth Enzymol , vol.397 , pp. 271-292
    • Purdy, K.J.1
  • 20
    • 0029759760 scopus 로고    scopus 로고
    • Rapid extraction of DNA and rRNA from sediments using a novel hydroxyapatite spin-column method
    • Purdy KJ, Embley TM, Takii S Nedwell DB (1996) Rapid extraction of DNA and rRNA from sediments using a novel hydroxyapatite spin-column method. Appl Environ Microbiol 62: 3905 3907.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3905-3907
    • Purdy, K.J.1    Embley, T.M.2    Takii, S.3    Nedwell, D.B.4
  • 21
    • 0036422275 scopus 로고    scopus 로고
    • The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments
    • Purdy KJ, Embley TM Nedwell DB (2002) The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments. Antonie van Leeuwenhoek 81: 181 187.
    • (2002) Antonie Van Leeuwenhoek , vol.81 , pp. 181-187
    • Purdy, K.J.1    Embley, T.M.2    Nedwell, D.B.3
  • 22
    • 0037641305 scopus 로고    scopus 로고
    • Analysis of the sulphate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments
    • Purdy KJ, Nedwell DB Embley TM (2003a) Analysis of the sulphate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments. Appl Environ Microbiol 69: 3181 3191.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3181-3191
    • Purdy, K.J.1    Nedwell, D.B.2    Embley, T.M.3
  • 23
    • 0037721420 scopus 로고    scopus 로고
    • Use of 16S rRNA-targeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary
    • Purdy KJ, Munson MA, Embley TM Nedwell DB (2003b) Use of 16S rRNA-targeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary. FEMS Microbiol Ecol 44: 361 371.
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 361-371
    • Purdy, K.J.1    Munson, M.A.2    Embley, T.M.3    Nedwell, D.B.4
  • 24
    • 0037445316 scopus 로고    scopus 로고
    • Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different design treating identical wastewater
    • Rowan AK, Snape JR, Fearnside D, Barer MR, Curtis TP Head IM (2003) Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different design treating identical wastewater. FEMS Microbiol Ecol 43: 195 206.
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 195-206
    • Rowan, A.K.1    Snape, J.R.2    Fearnside, D.3    Barer, M.R.4    Curtis, T.P.5    Head, I.M.6
  • 25
    • 0036272479 scopus 로고    scopus 로고
    • Desulfobulbus mediterraneus sp. nov., a sulfate-reducing bacterium growing on mono- and disaccharides
    • Sass AM, Rütters H, Cypionka H Sass H (2002) Desulfobulbus mediterraneus sp. nov., a sulfate-reducing bacterium growing on mono- and disaccharides. Arch Microbiol 177: 468 474.
    • (2002) Arch Microbiol , vol.177 , pp. 468-474
    • Sass, A.M.1    Rütters, H.2    Cypionka, H.3    Sass, H.4
  • 26
    • 0142074115 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis in marine microbial ecology
    • Schaefer H Muyzer G (2001) Denaturing gradient gel electrophoresis in marine microbial ecology. Meth Microbiol 30: 425 468.
    • (2001) Meth Microbiol , vol.30 , pp. 425-468
    • Schaefer, H.1    Muyzer, G.2
  • 27
    • 26844517947 scopus 로고    scopus 로고
    • Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes)
    • Schauer M, Kamenik C Hahn MW (2005) Ecological differentiation within a cosmopolitan group of planktonic freshwater bacteria (SOL cluster, Saprospiraceae, Bacteroidetes). Appl Environ Microbiol 71: 5900 5907.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5900-5907
    • Schauer, M.1    Kamenik, C.2    Hahn, M.W.3
  • 28
    • 0025781097 scopus 로고
    • DNA recovery and direct detection of Tn5 sequences from soil
    • Selenska S Klingmüller W (1991) DNA recovery and direct detection of Tn5 sequences from soil. Lett Appl Microbiol 13: 21 24.
    • (1991) Lett Appl Microbiol , vol.13 , pp. 21-24
    • Selenska, S.1    Klingmüller, W.2
  • 29
    • 84959690651 scopus 로고
    • The distribution of Gammarus species in estuaries
    • Spooner GM (1947) The distribution of Gammarus species in estuaries. J Mar Biol Assoc 27: 1 52.
    • (1947) J Mar Biol Assoc , vol.27 , pp. 1-52
    • Spooner, G.M.1
  • 30
    • 0022843649 scopus 로고
    • Canonical correspondence-analysis - A new eigenvector technique for multivariate direct gradient analysis
    • ter Braak CJF (1986) Canonical correspondence-analysis - a new eigenvector technique for multivariate direct gradient analysis. Ecology 67: 1167 1179.
    • (1986) Ecology , vol.67 , pp. 1167-1179
    • Ter Braak, C.J.F.1
  • 31
    • 0022903880 scopus 로고
    • Weighted averaging, logistic-regression and the gaussian response model
    • ter Braak CJF Looman CWN (1986) Weighted averaging, logistic-regression and the gaussian response model. Vegetation 65: 3 11.
    • (1986) Vegetation , vol.65 , pp. 3-11
    • Ter Braak, C.J.F.1    Looman, C.W.N.2
  • 32
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai YL Olson BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57: 1070 1074.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 33
    • 22744439617 scopus 로고    scopus 로고
    • Island size and bacterial diversity in an archipelago of engineering machines
    • van der Gast CJ, Lilley AK, Ager D Thompson IP (2005) Island size and bacterial diversity in an archipelago of engineering machines. Environ Microbiol 7: 1220 1226.
    • (2005) Environ Microbiol , vol.7 , pp. 1220-1226
    • Van Der Gast, C.J.1    Lilley, A.K.2    Ager, D.3    Thompson, I.P.4
  • 34
    • 0001614970 scopus 로고
    • Gram negative mesophilic sulfate-reducing bacteria
    • Balows, A., Trüper, H.G., Dworkin, M., Harder, W. Schleifer, K-H, eds), pp. Springer Verlag, New York.
    • Widdel F Bak F (1992) Gram negative mesophilic sulfate-reducing bacteria. The Procaryotes: A Handbook on the Biology of Bacteria: Ecophysiology, Identification, Application (Balows A, Trüper HG, Dworkin M, Harder W Schleifer K-H, eds), pp. 3352 3378. Springer Verlag, New York.
    • (1992) The Procaryotes: A Handbook on the Biology of Bacteria: Ecophysiology, Identification, Application , pp. 3352-3378
    • Widdel, F.1    Bak, F.2
  • 35
    • 0019959664 scopus 로고
    • Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids II Incomplete oxidation of propionate by Desulfobulbus propionicus gen nov. sp. nov
    • Widdel F Pfennig N (1982) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids II Incomplete oxidation of propionate by Desulfobulbus propionicus gen nov. sp. nov. Arch Microbiol 131: 360 365.
    • (1982) Arch Microbiol , vol.131 , pp. 360-365
    • Widdel, F.1    Pfennig, N.2
  • 36
    • 0025670821 scopus 로고
    • Organization in natural assemblages of desert lizards and tropical fishes
    • Winemiller KO Pianka ER (1990) Organization in natural assemblages of desert lizards and tropical fishes. Ecolog Monogr 60: 27 55.
    • (1990) Ecolog Monogr , vol.60 , pp. 27-55
    • Winemiller, K.O.1    Pianka, E.R.2
  • 37
    • 0347130868 scopus 로고    scopus 로고
    • Within- and between-lake variability in the composition of bacterioplankton communities: Investigations using multiple spatial scales
    • Yannarell AC Triplett EW (2004) Within- and between-lake variability in the composition of bacterioplankton communities: investigations using multiple spatial scales. Appl Environ Microbiol 70: 214 223.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 214-223
    • Yannarell, A.C.1    Triplett, E.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.