Semiautomated laser capture microdissection of lung adenocarcinoma cytology samples

Acta Cytologica

Volumn 56, Issue 6, 2012, Pages 622-631

  Roy Chowdhuri, Sinchita ^a   Hanson, Jeffrey ^a   Cheng, Jerome ^b   Rodriguez Canales, Jaime ^a   Fetsch, Patricia ^a   Balis, Ulysses ^b   Filie, Armando C ^a   Giaccone, Giuseppe ^a   Emmert Buck, Michael R ^a   Hipp, Jason D ^b  

^a NATIONAL CANCER INSTITUTE   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

Cytology; Lung adenocarcinoma; Semiautomated laser capture microdissection; Spatially invariant vector quantization

Indexed keywords

ALGORITHM; ARTICLE; CANCER CYTODIAGNOSIS; CASE REPORT; COMPUTER PROGRAM; COMPUTER SYSTEM; HUMAN; HUMAN CELL; IMMUNOCYTOCHEMISTRY; LABORATORY AUTOMATION; LASER CAPTURE MICRODISSECTION; LUNG ADENOCARCINOMA; MOLECULAR DIAGNOSIS; PLEURA EFFUSION; PRIORITY JOURNAL; SEMIAUTOMATED LASER CAPTURE MICRODISSECTION; SENSITIVITY AND SPECIFICITY; SPATIALLY INVARIANT VECTOR QUANTIZATION; TUMOR CELL;

EID: 84870722504     PISSN: 00015547     EISSN: None     Source Type: Journal    
DOI: 10.1159/000342984     Document Type: Article

References (37)

1. Eberhard DA, Johnson BE, Amler LC, Goddard AD, Heldens SL, Herbst RS, Ince WL, Janne PA, Januario T, Johnson DH, Klein P, Miller VA, Ostland MA, Ramies DA, Sebisanovic D, Stinson JA, Zhang YR, Seshagiri S, Hillan KJ: Mutations in the epidermal growth factor receptor and in kras are predictive and prognostic indicators in patients with non-small-cell lung cancer treated with chemotherapy alone and in combination with erlotinib. J Clin Oncol 2005; 23: 5900-5909.
2. Jackman DM, Miller VA, Cioffredi LA, Yeap BY, Janne PA, Riely GJ, Ruiz MG, Giaccone G, Sequist LV, Johnson BE: Impact of epidermal growth factor receptor and kras mutations on clinical outcomes in previously untreated non-small cell lung cancer patients: results of an online tumor registry of clinical trials. Clin Cancer Res 2009; 15: 5267-5273.
3. West H, Lilenbaum R, Harpole D, Wozniak A, Sequist L: Molecular analysis-based treatment strategies for the management of nonsmall cell lung cancer. J Thorac Oncol 2009; 4:S1029-S1039, quiz S1041-S1022.
4. Pao W, Miller V, Zakowski M, Doherty J, Politi K, Sarkaria I, Singh B, Heelan R, Rusch V, Fulton L, Mardis E, Kupfer D, Wilson R, Kris M, Varmus H: EGF receptor gene mutations are common in lung cancers from 'never smokers' and are associated with sensitivity of tumors to gefitinib and erlotinib. Proc Natl Acad Sci USA 2004; 101: 13306-13311. (Pubitemid 39209661)
5. Lynch TJ, Bell DW, Sordella R, Gurubhagavatula S, Okimoto RA, Brannigan BW, Harris PL, Haserlat SM, Supko JG, Haluska FG, Louis DN, Christiani DC, Settleman J, Haber DA: Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. N Engl J Med 2004; 350: 2129-2139. (Pubitemid 38637993)
6. Paez JG, Janne PA, Lee JC, Tracy S, Greulich H, Gabriel S, Herman P, Kaye FJ, Lindeman N, Boggon TJ, Naoki K, Sasaki H, Fujii Y, Eck MJ, Sellers WR, Johnson BE, Meyerson M: EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy. Science 2004; 304: 1497-1500. (Pubitemid 38720929)
7. Janne PA, Engelman JA, Johnson BE: Epidermal growth factor receptor mutations in non-small-cell lung cancer: implications for treatment and tumor biology. J Clin Oncol 2005; 23: 3227-3234. (Pubitemid 46211347)
8. Han SW, Kim TY, Hwang PG, Jeong S, Kim J, Choi IS, Oh DY, Kim JH, Kim DW, Chung DH, Im SA, Kim YT, Lee JS, Heo DS, Bang YJ, Kim NK: Predictive and prognostic impact of epidermal growth factor receptor mutation in non-small-cell lung cancer patients treated with gefitinib. J Clin Oncol 2005; 23: 2493-2501. (Pubitemid 47050839)
9. Mok TS, Wu YL, Thongprasert S, Yang CH, Chu DT, Saijo N, Sunpaweravong P, Han B, Margono B, Ichinose Y, Nishiwaki Y, Ohe Y, Yang JJ, Chewaskulyong B, Jiang H, Duffield EL, Watkins CL, Armour AA, Fukuoka M: Gefitinib or carboplatin-paclitaxel in pulmonary adenocarcinoma. N Engl J Med 2009; 361: 947-957.
10. Rosell R, Taron M, Reguart N, Isla D, Moran T: Epidermal growth factor receptor activation: how exon 19 and 21 mutations changed our understanding of the pathway. Clin Cancer Res 2006; 12: 7222-7231. (Pubitemid 46095393)
11. Pao W, Wang TY, Riely GJ, Miller VA, Pan Q, Ladanyi M, Zakowski MF, Heelan RT, Kris MG, Varmus HE: Kras mutations and primary resistance of lung adenocarcinomas to gefitinib or erlotinib. PLoS Med 2005; 2:e17.
12. Massarelli E, Varella-Garcia M, Tang X, Xavier AC, Ozburn NC, Liu DD, Bekele BN, Herbst RS, Wistuba, II: Kras mutation is an important predictor of resistance to therapy with epidermal growth factor receptor tyrosine kinase inhibitors in non-small-cell lung cancer. Clin Cancer Res 2007; 13: 2890-2896. (Pubitemid 46849563)
13. Malapelle U, Bellevicine C, Zeppa P, Palombini L, Troncone G: Cytology-based gene mutation tests to predict response to antiepidermal growth factor receptor therapy: a review. Diagn Cytopathol 2011; 39: 703-710.
14. Travis WD, Rekhtman N, Riley GJ, Geisinger KR, Asamura H, Brambilla E, Garg K, Hirsch FR, Noguchi M, Powell CA, Rusch VW, Scagliotti G, Yatabe Y: Pathologic diagnosis of advanced lung cancer based on small biopsies and cytology: a paradigm shift. J Thorac Oncol 2010; 5: 411-414.
15. Rivera MP, Detterbeck F, Mehta AC: Diagnosis of lung cancer: the guidelines. Chest 2003; 123: 129S-136S. (Pubitemid 36135710)
16. Bonner RF, Emmert-Buck M, Cole K, Pohida T, Chuaqui R, Goldstein S, Liotta LA: Laser capture microdissection: molecular analysis of tissue. Science 1997; 278: 1481-1483.
17. Burgess JK, Hazelton RH: New developments in the analysis of gene expression. Redox Rep 2000; 5: 63-73. (Pubitemid 30487972)
18. Iyer EP, Cox DN: Laser capture microdissection of Drosophila peripheral neurons. J Vis Exp 2010, DOI: 10.3791/2016.
19. Craven RA, Banks RE: Laser capture microdissection for proteome analysis. Curr Protoc Protein Sci 2003;chapter 22:unit 22.3.
20. Mustafa D, Kros JM, Luider T: Combining laser capture microdissection and proteomics techniques. Methods Mol Biol 2008; 428: 159-178. (Pubitemid 351365940)
21. Lawrie LC, Curran S: Laser capture microdissection and colorectal cancer proteomics. Methods Mol Biol 2005; 293: 245-253.
22. Charboneau L, Paweletz CP, Liotta LA: Laser capture microdissection. Curr Protoc Cell Biol 2001;chapter 2:unit 2.5.
23. Bichsel VE, Liotta LA, Petricoin EF 3rd: Cancer proteomics: from biomarker discovery to signal pathway profiling. Cancer J 2001; 7: 69-78.
24. Callagy G, Jackson L, Caldas C: Comparative genomic hybridization using DNA from laser capture microdissected tissue. Methods Mol Biol 2005; 293: 39-55.
25. Kurihara Y, Ghazizadeh M, Bo H, Shimizu H, Kawanami O, Moriyama Y, Onda M: Genome-wide screening of laser capture microdissected gastric signet-ring cell carcinomas. J Nihon Med Sch 2002; 69: 235-242.
26. Chowdhuri SR, Xi L, Pham TH, Hanson J, Rodriguez-Canales J, Berman A, Rajan A, Giaccone G, Emmert-Buck M, Raffeld M, Filie AC: Egfr and kras mutation analysis in cytologic samples of lung adenocarcinoma enabled by laser capture microdissection. Mod Pathol 2012; 25: 584-555.
27. Fend F, Emmert-Buck MR, Chuaqui R, Cole K, Lee J, Liotta LA, Raffeld M: Immuno-LCM: laser capture microdissection of immunostained frozen sections for mrna analysis. Am J Pathol 1999; 154: 61-66. (Pubitemid 29031612)
28. Fend F, Kremer M, Quintanilla-Martinez L: Laser capture microdissection: methodical aspects and applications with emphasis on immuno-laser capture microdissection. Pathobiology 2000; 68: 209-214. (Pubitemid 32247257)
29. Eltoum IA, Siegal GP, Frost AR: Microdissection of histologic sections: past, present, and future. Adv Anat Pathol 2002; 9: 316-322.
30. Tangrea MA, Mukherjee S, Gao B, Markey SP, Du Q, Armani M, Kreitman MS, Rosenberg AM, Wallis BS, Eberle FC, Duncan FC, Hanson JC, Chuaqui RF, Rodriguez-Canales J, Emmert-Buck MR: Effect of immunohistochemistry on molecular analysis of tissue samples: implications for microdissection technologies. J Histochem Cytochem 2011; 59: 591-600.
31. Eberle FC, Hanson JC, Killian JK, Wei L, Ylaya K, Hewitt SM, Jaffe ES, Emmert-Buck MR, Rodriguez-Canales J: Immunoguided laser assisted microdissection techniques for DNA methylation analysis of archival tissue specimens. J Mol Diagn 2010; 12: 394-401.
32. Hipp J, Cheng J, Hanson JC, Yan W, Taylor P, Hu N, Rodriguez-Canales J, Tangrea MA, Emmert-Buck MR, Balis U: SIVQ-aided laser capture microdissection: a tool for highthroughput expression profiling. J Pathol Inform 2011; 2: 19.
33. Hipp JD, Cheng JY, Toner M, Tompkins RG, Balis UJ: Spatially invariant vector quantization: a pattern matching algorithm for multiple classes of image subject matter including pathology. J Pathol Inform 2011; 2: 13.
34. Hipp J, Smith SC, Cheng J, Tomlins SA, Monaco J, Madabhushi A, Kunju LP, Balis UJ: Optimization of complex cancer morphology detection using the SIVQ pattern recognition algorithm. Anal Cell Pathol (Amst) 2012; 35: 41-50.
35. Smouse JH, Cibas ES, Janne PA, Joshi VA, Zou KH, Lindeman NI: EGFR mutations are detected comparably in cytologic and surgical pathology specimens of nonsmall cell lung cancer. Cancer Cytopathol 2009; 117: 67-72.
36. Cheng J, Hipp J, Monaco J, Lucas DR, Madabhushi A, Balis UJ: Automated vector selection of SIVQ and parallel computing integration MATLAB: innovations supporting large-scale and high-throughput image analysis studies. J Pathol Inform 2011; 2: 37.
37. Bibbo M: How technology is reshaping the practice of nongynecologic cytology: frontiers of cytology symposium. Acta Cytologica 2007; 51: 123-152.