Plant residues - A low cost, effective bioremediation treatment for petrogenic hydrocarbon-contaminated soil

Science of the Total Environment

Volumn 443, Issue , 2013, Pages 766-774

  Shahsavari, Esmaeil ^a,b   Adetutu, Eric M ^a,b   Anderson, Peter A ^b   Ball, Andrew S ^a,b  

^a RMIT UNIVERSITY   (Australia)

^b FLINDERS UNIVERSITY   (Australia)

Author keywords

AlkB; DGGE; Petrogenic hydrocarbons; Plant residues

Indexed keywords

ALIPHATIC HYDROCARBONS; ALKB; BACTERIAL POPULATION; CONTAMINATED SOILS; CONTROL VALUES; DENATURING GRADIENT GEL ELECTROPHORESES (DGGE); DGGE; DIVERSITY INDEX; ENVIRONMENTAL CONTAMINANT; GENE COPY NUMBER; GREENHOUSE EXPERIMENTS; IN-CONTROL; LOW COSTS; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY ANALYSIS; MICROBIAL STRUCTURES; NON-INVASIVE TECHNOLOGY; PETROGENIC; PLANT MATERIAL; PLANT RESIDUES; POSITIVE CORRELATIONS; REDUCTION RATE; SHANNON DIVERSITY; SOIL MICROBIAL COMMUNITY; TOTAL PETROLEUM HYDROCARBONS;

BIOREMEDIATION; BIOTECHNOLOGY; ELECTROPHORESIS; GENES; GREENHOUSE EFFECT; MICROORGANISMS; PETROLEUM CHEMISTRY; SOIL POLLUTION; SOILS;

HYDROCARBONS;

ALIPHATIC HYDROCARBON; DNA 16S; FLUORESCEIN DIACETATE; PETROLEUM DERIVATIVE; RNA 16S;

ALIPHATIC HYDROCARBON; BIOREMEDIATION; CONTAMINATED LAND; COST-BENEFIT ANALYSIS; ELECTROKINESIS; MICROBIAL COMMUNITY; PHYTOREMEDIATION; PLANT RESIDUE; SOIL AMENDMENT; SOIL POLLUTION;

ACTINOBACTERIA; ALFALFA; ALKB GENE; ARTICLE; ASCOMYCETES; BACTERIAL COUNT; BIOREMEDIATION; COMMUNITY STRUCTURE; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DENATURING GRADIENT GEL ELECTROPHORESIS; EXPERIMENTAL STUDY; FIRMICUTES; FUNGAL COMMUNITY; GENE; GENE DOSAGE; GREENHOUSE; HAY; HYDROLYSIS; MICROBIAL DIVERSITY; MICROBIAL POPULATION DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PEA; PLANT RESIDUE; PRIORITY JOURNAL; PROTEOBACTERIA; SOIL AMENDMENT; SOIL DEGRADATION; SOIL MICROFLORA; SOIL POLLUTION; STRAW; WHEAT;

BIODEGRADATION, ENVIRONMENTAL; COSTS AND COST ANALYSIS; HYDROCARBONS; PETROLEUM; PLANTS; SOIL POLLUTANTS;

BACTERIA (MICROORGANISMS); PISUM SATIVUM;

EID: 84870696250     PISSN: 00489697     EISSN: 18791026     Source Type: Journal    
DOI: 10.1016/j.scitotenv.2012.11.029     Document Type: Article

References (59)

1. Adetutu E.M., Thorpe K., Bourne S., Cao X., Shahsavari E., Kirby G., et al. Phylogenetic diversity of fungal communities in areas accessible and not accessible to tourists in Naracoorte Caves. Mycologia 2011, 103:959-968.
2. Adetutu E.M., Ball A.S., Weber J., Aleer S., Dandie C.E., Juhasz A.L. Impact of bacterial and fungal processes on 14C-hexadecane mineralisation in weathered hydrocarbon contaminated soil. Sci Total Environ 2012, 414:585-591.
3. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programmes. Nucleic Acids Res 1997, 25:3389-3402.
4. Banks M.K., Kulakow P., Schwab A.P., Chen Z., Rathbone K. Degradation of crude oil in the rhizosphere of Sorghum bicolor. Int J Phytoremediation 2003, 5:225-234.
5. Barathi S., Vasudevan N. Bioremediation of crude oil contaminated soil by bioaugmentation of Pseudomonas fluorescens NS1. J Environ Sci Health A 2003, 38:1857-1866.
6. Berthe-Corti L., Nachtkamp M. Bacterial communities in hydrocarbon-contaminated marine coastal environments. Handbook of hydrocarbon and lipid microbiology 2010, 2350-2359. Springer, Berlin Heidelberg. K.N. Timmis (Ed.).
7. British Petroleum BP statistical review of world energy 2011, BP plc, London.
8. Bushnell L., Haas H. The utilisation of certain hydrocarbons by microorganisms. J Bacteriol 1941, 41:653-673.
9. Callaham M.A., Stewart A.J., Alarcón C., McMillen S.J. Effects of earthworm (Eisenia fetida) and wheat (Triticum aestivum) straw additions on selected properties of petroleum-contaminated soils. Environ Toxicol Chem 2002, 21:1658-1663.
10. Cerniglia C.E., Sutherland J.B. Degradation of polycyclic aromatic hydrocarbons by fungi. Handbook of hydrocarbon and lipid microbiology 2010, 2079-2110. Springer, Berlin Heidelberg. K.N. Timmis (Ed.).
11. Chen Y.-C., Banks M.K., Schwab A.P. Pyrene degradation in the rhizosphere of tall fescue (Festuca arundinacea) and switchgrass (Panicum virgatum L.). Environ Sci Technol 2003, 37:5778-5782.
12. Chénier M.R., Beaumier D., Roy R., Driscoll B.T., Lawrence J.R., Greer C.W. Impact of seasonal variations and nutrient inputs on nitrogen cycling and degradation of hexadecane by replicated river biofilms. Appl Environ Microbiol 2003, 69:5170-5177.
13. Cohen Y. Bioremediation of oil by marine microbial mats. Int Microbiol 2002, 5:189-193.
14. Gaskin S., Bentham R. Comparison of enrichment methods for the isolation of pyrene-degrading bacteria. Int Biodeterior Biodegrad 2005, 56:80-85.
15. Gaskin S.E., Bentham R.H. Rhizoremediation of hydrocarbon contaminated soil using Australian native grasses. Sci Total Environ 2010, 408:3683-3688.
16. Gaskin S., Soole K., Bentham R. Screening of Australian native grasses for rhizoremediation of aliphatic hydrocarbon-contaminated soil. Int J Phytoremediation 2008, 10:378-389.
17. Gaylarde C.C., Bento F.M., Kelley J. Microbial contamination of stored hydrocarbon fuels and its control. Rev Microbiol 1999, 30:1-10.
18. Germida J.J., Frick C.M., Farrell R.E. Phytoremediation of oil-contaminated soils. Developments in soil science 2002, Vol. 28:169-186. Elsevier, [Part 2]. A. Violante, P.M. Huang, J.M. Bollag, L. Gianfreda (Eds.).
19. Girvan M.S., Bullimore J., Pretty J.N., Osborn A.M., Ball A.S. Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Appl Environ Microbiol 2003, 69:1800-1809.
20. Griffiths R.I., Whiteley A.S., O'Donnell A.G., Bailey M.J. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA-and rRNA-based microbial community composition. Appl Environ Microbiol 2000, 66:5488-5491.
21. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis programme for Windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
22. Huang X. A contig assembly programme based on sensitive detection of fragment overlaps. Genomics 1992, 14:18-25.
23. Hultgren J., Pizzul L., Castillo MdP, Granhall U. Degradation of PAH in a creosote-contaminated soil. A comparison between the effects of willows (Salix viminalis), wheat straw and a nonionic surfactant. Int J Phytoremediation 2009, 12:54-66.
24. Indorante S., Follmer L., Koenig P., Hammer R. Particle-size analysis by a modified pipette procedure. Soil Sci Soc Am J 1990, 54:560-563.
25. Jørgensen K.S., Puustinen J., Suortti A.M. Bioremediation of petroleum hydrocarbon-contaminated soil by composting in biopiles. Environ Pollut 2000, 107:245-254.
26. Jurelevicius D., Cotta S.R., Peixoto R., Rosado A.S., Seldin L. Distribution of alkane-degrading bacterial communities in soils from King George Island, Maritime Antarctic. Eur J Soil Biol 2012, 51:37-44.
27. Kaczorek E., Moszyńska S., Olszanowski A. Modification of cell surface properties of Pseudomonas alcaligenes S22 during hydrocarbon biodegradation. Biodegradation 2011, 22:359-366.
28. Kadali K.K., Simons K.L., Skuza P.P., Moore R.B., Ball A.S. A complementary approach to identifying and assessing the remediation potential of hydrocarbonoclastic bacteria. J Microbiol Methods 2012, 88:348-355.
29. Kim J., Kang S.H., Min K.A., Cho K.S., Lee I.S. Rhizosphere microbial activity during phytoremediation of diesel-contaminated soil. J Environ Sci Health A 2006, 41:2503-2516.
30. Kirkpatrick W.D., White P.M., Wolf D.C., Thoma G.J., Reynolds C.M. Selecting plants and nitrogen rates to vegetate crude-oil-contaminated soil. Int J Phytoremediation 2006, 8:285-297.
31. Liu W., Luo Y., Teng Y., Li Z., Ma L.Q. Bioremediation of oily sludge-contaminated soil by stimulating indigenous microbes. Environ Geochem Health 2010, 32:23-29.
32. Makadia T.H., Adetutu E.M., Simons K.L., Jardine D., Sheppard P.J., Ball A.S. Re-use of remediated soils for the bioremediation of waste oil sludge. J Environ Manage 2011, 92:866-871.
33. Man J. MPN tables, corrected. Appl Microbiol Biotechnol 1983, 17:301-305.
34. Margesin R. Determination of enzyme activities in contaminated soil. Monitoring and assessing soil bioremediation 2005, Vol. 5:309-320. Springer, Berlin Heidelberg. R. Margesin, F. Schinner (Eds.).
35. Militon C., Boucher D., Vachelard C., Perchet G., Barra V., Troquet J., et al. Bacterial community changes during bioremediation of aliphatic hydrocarbon-contaminated soil. FEMS Microbiol Ecol 2010, 74:669-681.
36. Muyzer G., De Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993, 59:695-700.
37. Nakatsu C. Soil microbial community analysis using denaturing gradient gel electrophoresis. Soil Sci Soc Am J 2007, 71:562-571.
38. Peng S., Zhou Q., Cai Z., Zhang Z. Phytoremediation of petroleum contaminated soils by Mirabilis jalapa L. in a greenhouse plot experiment. J Hazard Mater 2009, 168:1490-1496.
39. Phillips L.A., Greer C.W., Germida J.J. Culture-based and culture-independent assessment of the impact of mixed and single plant treatments on rhizosphere microbial communities in hydrocarbon contaminated flare-pit soil. Soil Biol Biochem 2006, 38:2823-2833.
40. Phillips L.A., Germida J.J., Farrell R.E., Greer C.W. Hydrocarbon degradation potential and activity of endophytic bacteria associated with prairie plants. Soil Biol Biochem 2008, 40:3054-3064.
41. Pilon-Smits E. Phytoremediation. Annu Rev Plant Biol 2005, 56:15-39.
42. Prince R.C. Eukaryotic hydrocarbon degraders. Handbook of hydrocarbon and lipid microbiology 2010, 2065-2078. Springer, Berlin Heidelberg. K.N. Timmis (Ed.).
43. Rayment G., Higginson F. Australian laboratory handbook of soil and water chemical methods 1992, Inkata Press Pty Ltd.
44. Rhykerd R.L., Crews B., McInnes K.J., Weaver R.W. Impact of bulking agents, forced aeration, and tillage on remediation of oil-contaminated soil. Bioresour Technol 1999, 67:279-285.
45. Rojas-Avelizapa N.G., Roldán-Carrillo T., Zegarra-Martínez H., Muñoz-Colunga A.M., Fernández-Linares L.C. A field trial for an ex-situ bioremediation of a drilling mud-polluted site. Chemosphere 2007, 66:1595-1600.
46. Ros M., Rodríguez I., García C., Hernández T. Microbial communities involved in the bioremediation of an aged recalcitrant hydrocarbon polluted soil by using organic amendments. Bioresour Technol 2010, 101:6916-6923.
47. Sambrook J., Russell D.W. Molecular cloning: a laboratory manual 2001, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
48. Sarkar D., Ferguson M., Datta R., Birnbaum S. Bioremediation of petroleum hydrocarbons in contaminated soils: comparison of biosolids addition, carbon supplementation, and monitored natural attenuation. Environ Pollut 2005, 136:187-195.
49. SAS Institute Inc. SAS/STAT 9.1 user's guide 2004, SAS Institute Inc., Cary, NC.
50. Schulz S., Peréz-de-Mora A., Engel M., Munch J.C., Schloter M. A comparative study of most probable number (MPN)-PCR vs. real-time-PCR for the measurement of abundance and assessment of diversity of alkB homologous genes in soil. J Microbiol Methods 2010, 80:295-298.
51. Serrano A., Gallego M., González J.L., Tejada M. Natural attenuation of diesel aliphatic hydrocarbons in contaminated agricultural soil. Environ Pollut 2008, 151:494-502.
52. Sharma S., Aneja M., Mayer J., Schloter M., Munch J. RNA fingerprinting of microbial community in the rhizosphere soil of grain legumes. FEMS Microbiol Lett 2004, 240:181-186.
53. Sheppard P.J., Adetutu E.M., Makadia T.H., Ball A.S. Microbial community and ecotoxicity analysis of bioremediated, weathered hydrocarbon-contaminated soil. Soil Res 2011, 49:261-269.
54. Tang J., Wang R., Niu X., Zhou Q. Enhancement of soil petroleum remediation by using a combination of ryegrass (Lolium perenne) and different microorganisms. Soil Tillage Res 2010, 110:87-93.
55. Trigo C., Ball A.S. Is the solubilized product from the degradation of lignocellulose by actinomycetes a precursor of humic substances?. Microbiology 1994, 140:3145-3152.
56. Wang X., Cook R., Tao S., Xing B. Sorption of organic contaminants by biopolymers: role of polarity, structure and domain spatial arrangement. Chemosphere 2007, 66:1476-1484.
57. Whyte L., Schultz A., Beilen J., Luz A., Pellizari V., Labbé D., et al. Prevalence of alkane monooxygenase genes in Arctic and Antarctic hydrocarbon-contaminated and pristine soils1. FEMS Microbiol Ecol 2002, 41:141-150.
58. Zhang K., Hua X.-F., Han H.-L., Wang J., Miao C.-C., Xu Y.-Y., et al. Enhanced bioaugmentation of petroleum- and salt-contaminated soil using wheat straw. Chemosphere 2008, 73:1387-1392.
59. Zhang D.C., Mortelmaier C., Margesin R. Characterization of the bacterial archaeal diversity in hydrocarbon-contaminated soil. Sci Total Environ 2012, 421-422:184-196.