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Volumn 38, Issue 9, 2006, Pages 2823-2833

Culture-based and culture-independent assessment of the impact of mixed and single plant treatments on rhizosphere microbial communities in hydrocarbon contaminated flare-pit soil

Author keywords

Bioremediation; Denaturing gradient gel electrophoresis; Flare pit soil; Microbial community analysis; Petroleum hydrocarbon contamination; Phytoremediation

Indexed keywords

BIOREMEDIATION; CONCENTRATION (PROCESS); CONTAMINATION; ECOSYSTEMS; HYDROCARBONS; SOILS;

EID: 34250803429     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2006.04.038     Document Type: Article
Times cited : (105)

References (48)
  • 2
    • 0141890005 scopus 로고    scopus 로고
    • Phenol and catechol biodegradation by the haloalkaliphile Halomonas campisalis: Influence of pH and salinity
    • Alva, V.A., Peyton, B.M., 2003. Phenol and catechol biodegradation by the haloalkaliphile Halomonas campisalis: influence of pH and salinity. Environmental Science & Technology 37, 4397-4402.
    • (2003) Environmental Science & Technology , vol.37 , pp. 4397-4402
    • Alva, V.A.1    Peyton, B.M.2
  • 4
    • 33751385939 scopus 로고
    • Bioremediation in the rhizosphere: Plant roots and associated microbes clean contaminated soil
    • Anderson, T.A., Guthrie, E.A., Walton, B.T., 1993. Bioremediation in the rhizosphere: plant roots and associated microbes clean contaminated soil. Environmental Science & Technology 27, 2630-2636.
    • (1993) Environmental Science & Technology , vol.27 , pp. 2630-2636
    • Anderson, T.A.1    Guthrie, E.A.2    Walton, B.T.3
  • 5
    • 0033952474 scopus 로고    scopus 로고
    • Hydrocarbon-degrading filamentous fungi isolated from flare pit soils in northern and western Canada
    • April, T.M., Foght, J.M., Currah, R.S., 2000. Hydrocarbon-degrading filamentous fungi isolated from flare pit soils in northern and western Canada. Canadian Journal of Microbiology 46, 38-49.
    • (2000) Canadian Journal of Microbiology , vol.46 , pp. 38-49
    • April, T.M.1    Foght, J.M.2    Currah, R.S.3
  • 6
    • 0038354737 scopus 로고    scopus 로고
    • Rhizosphere microbial characterization in petroleum-contaminated soil
    • Banks, M.K., Mallede, H., Rathbone, K., 2003. Rhizosphere microbial characterization in petroleum-contaminated soil. Soil and Sediment Contamination 12, 371-385.
    • (2003) Soil and Sediment Contamination , vol.12 , pp. 371-385
    • Banks, M.K.1    Mallede, H.2    Rathbone, K.3
  • 7
    • 0029941934 scopus 로고    scopus 로고
    • Rapid, direct extraction of DNA from soils for PCR analysis using polyvinylpolypyrrolidone spin columns
    • Berthelet, M., Whyte, L.G., Greer, C.W., 1996. Rapid, direct extraction of DNA from soils for PCR analysis using polyvinylpolypyrrolidone spin columns. FEMS Microbiology Letters 138, 17-22.
    • (1996) FEMS Microbiology Letters , vol.138 , pp. 17-22
    • Berthelet, M.1    Whyte, L.G.2    Greer, C.W.3
  • 8
    • 0030812406 scopus 로고    scopus 로고
    • The effect of inorganic and organic supplements on the microbial degradation of phenanthrene and pyrene in soils
    • Carmichael, L.M., Pfaender, F.K., 1997. The effect of inorganic and organic supplements on the microbial degradation of phenanthrene and pyrene in soils. Biodegradation 8, 1-13.
    • (1997) Biodegradation , vol.8 , pp. 1-13
    • Carmichael, L.M.1    Pfaender, F.K.2
  • 9
    • 9644266836 scopus 로고    scopus 로고
    • Low temperature oxidation for the remediation of soil contaminated with motor oil
    • Science and Engineering
    • Catalan, L.J.J., Buset, K.C., Kling, L., 2004. Low temperature oxidation for the remediation of soil contaminated with motor oil. Journal of Environmental Science and Engineering 3, 279-288.
    • (2004) Journal of Environmental , vol.3 , pp. 279-288
    • Catalan, L.J.J.1    Buset, K.C.2    Kling, L.3
  • 10
    • 0141593674 scopus 로고    scopus 로고
    • Impact of seasonal variations and nutrient inputs on nitrogen cycling and degradation of hexadecane by replicated river biofilms
    • Chénier, M.R., Beaumier, D., Roy, R., Driscoll, B.T., Lawrence, J.R., Greer, C.W., 2003. Impact of seasonal variations and nutrient inputs on nitrogen cycling and degradation of hexadecane by replicated river biofilms. Applied and Environmental Microbiology 69, 5170-5177.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 5170-5177
    • Chénier, M.R.1    Beaumier, D.2    Roy, R.3    Driscoll, B.T.4    Lawrence, J.R.5    Greer, C.W.6
  • 14
    • 7044286190 scopus 로고    scopus 로고
    • Plant-associated Pseudomonas populations: Molecular biology, DNA dynamics, and gene transfer
    • Espinosa-Urgel, M., 2004. Plant-associated Pseudomonas populations: molecular biology, DNA dynamics, and gene transfer. Plasmid 52, 139-150.
    • (2004) Plasmid , vol.52 , pp. 139-150
    • Espinosa-Urgel, M.1
  • 15
    • 0032103167 scopus 로고    scopus 로고
    • Molecular analysis of bacterial isolates and total community DNA from kraft pulp mill effluent treatment systems
    • Fortin, N., Fulthorpe, R.R., Allen, D.G., Greer, C.W., 1998. Molecular analysis of bacterial isolates and total community DNA from kraft pulp mill effluent treatment systems. Canadian Journal of Microbiology 44, 537-546.
    • (1998) Canadian Journal of Microbiology , vol.44 , pp. 537-546
    • Fortin, N.1    Fulthorpe, R.R.2    Allen, D.G.3    Greer, C.W.4
  • 16
    • 1642523441 scopus 로고    scopus 로고
    • Soil washing improves the recovery of total community DNA from polluted and high organic content sediments
    • Fortin, N., Beaumier, D., Lee, K., Greer, C.W., 2004. Soil washing improves the recovery of total community DNA from polluted and high organic content sediments. Journal of Microbiological Methods 56, 181-191.
    • (2004) Journal of Microbiological Methods , vol.56 , pp. 181-191
    • Fortin, N.1    Beaumier, D.2    Lee, K.3    Greer, C.W.4
  • 17
    • 23744470829 scopus 로고    scopus 로고
    • Catabolic versatility of aromatic compound-degrading halophilic bacteria
    • García, M.T., Ventosa, A., Mellado, E., 2005. Catabolic versatility of aromatic compound-degrading halophilic bacteria. FEMS Microbiology Ecology 54, 97-109.
    • (2005) FEMS Microbiology Ecology , vol.54 , pp. 97-109
    • García, M.T.1    Ventosa, A.2    Mellado, E.3
  • 18
    • 0033083978 scopus 로고    scopus 로고
    • Effect of nitrogen and phosphorus addition on phenanthrene biodegradation in four soils
    • Johnson, C.R., Scow, K.M., 1999. Effect of nitrogen and phosphorus addition on phenanthrene biodegradation in four soils. Biodegradation 10, 43-50.
    • (1999) Biodegradation , vol.10 , pp. 43-50
    • Johnson, C.R.1    Scow, K.M.2
  • 19
    • 0033829008 scopus 로고    scopus 로고
    • Polyphasic microbial community analysis of petroleum-contaminated soils from two northern Canadian communities
    • Juck, D., Charles, T., Whyte, L.G., Greer, C.W., 2000. Polyphasic microbial community analysis of petroleum-contaminated soils from two northern Canadian communities. FEMS Microbiology Ecology 33, 241-249.
    • (2000) FEMS Microbiology Ecology , vol.33 , pp. 241-249
    • Juck, D.1    Charles, T.2    Whyte, L.G.3    Greer, C.W.4
  • 20
    • 1642304936 scopus 로고    scopus 로고
    • Effect of root-derived substrates on the expression of nah-lux genes in Pseudomonas fluorescens HK44: Implications for PAH biodegradation in the rhizosphere
    • Kamath, R., Schnoor, J.L., Alvarez, P.J.J., 2004. Effect of root-derived substrates on the expression of nah-lux genes in Pseudomonas fluorescens HK44: implications for PAH biodegradation in the rhizosphere. Environmental Science & Technology 38, 1740-1745.
    • (2004) Environmental Science & Technology , vol.38 , pp. 1740-1745
    • Kamath, R.1    Schnoor, J.L.2    Alvarez, P.J.J.3
  • 21
    • 0030034985 scopus 로고    scopus 로고
    • Microbial degradation of polycyclic aromatic hydrocarbons in soils affected by the organic matrix of compost
    • Kästner, M., Mahro, B., 1996. Microbial degradation of polycyclic aromatic hydrocarbons in soils affected by the organic matrix of compost. Applied Microbiology and Biotechnology 44, 668-675.
    • (1996) Applied Microbiology and Biotechnology , vol.44 , pp. 668-675
    • Kästner, M.1    Mahro, B.2
  • 22
    • 7444256788 scopus 로고    scopus 로고
    • The effects of perennial ryegrass and alfalfa on microbial abundance and diversity in petroleum contaminated soil
    • Kirk, J.L., Klironomonos, J.N., Lee, H., Trevors, J.T., 2005. The effects of perennial ryegrass and alfalfa on microbial abundance and diversity in petroleum contaminated soil. Environmental Pollution 133, 455-465.
    • (2005) Environmental Pollution , vol.133 , pp. 455-465
    • Kirk, J.L.1    Klironomonos, J.N.2    Lee, H.3    Trevors, J.T.4
  • 23
    • 0032900505 scopus 로고    scopus 로고
    • The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism
    • Laurie, A.D., Lloyd-Jones, G., 1999. The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism. Journal of Bacteriology 181, 531-540.
    • (1999) Journal of Bacteriology , vol.181 , pp. 531-540
    • Laurie, A.D.1    Lloyd-Jones, G.2
  • 25
    • 0027134061 scopus 로고
    • Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria
    • Lee, S., Malone, C., Kemp, P.F., 1993. Use of multiple 16S rRNA-targeted fluorescent probes to increase signal strength and measure cellular RNA from natural planktonic bacteria. Marine Ecology Progress Series 101, 193-201.
    • (1993) Marine Ecology Progress Series , vol.101 , pp. 193-201
    • Lee, S.1    Malone, C.2    Kemp, P.F.3
  • 26
    • 3442891491 scopus 로고    scopus 로고
    • A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil
    • Luz, A.P., Pellizari, V.H., Whyte, L.G., Greer, C.W., 2004. A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. Canadian Journal of Microbiology 50, 323-333.
    • (2004) Canadian Journal of Microbiology , vol.50 , pp. 323-333
    • Luz, A.P.1    Pellizari, V.H.2    Whyte, L.G.3    Greer, C.W.4
  • 27
    • 0038317584 scopus 로고    scopus 로고
    • Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils
    • Margesin, R., Labbe, D., Schinner, F., Greer, C.W., Whyte, L.G., 2003. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils. Applied and Environmental Microbiology 69, 3085-3092.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 3085-3092
    • Margesin, R.1    Labbe, D.2    Schinner, F.3    Greer, C.W.4    Whyte, L.G.5
  • 29
  • 31
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., De Waal, E.C., Uitteerlinden, A.G., 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59, 695-700.
    • (1993) Applied and Environmental Microbiology , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitteerlinden, A.G.3
  • 32
    • 17244380588 scopus 로고    scopus 로고
    • Effect of root death and decay on dissipation of polycyclic aromatic hydrocarbons in the rhizosphere of yellow sweet clover and tall fescue
    • Parrish, Z.D., Banks, M.K., Schwab, A.P., 2005. Effect of root death and decay on dissipation of polycyclic aromatic hydrocarbons in the rhizosphere of yellow sweet clover and tall fescue. Journal of Environmental Quality 34, 207-216.
    • (2005) Journal of Environmental Quality , vol.34 , pp. 207-216
    • Parrish, Z.D.1    Banks, M.K.2    Schwab, A.P.3
  • 33
    • 2642587546 scopus 로고    scopus 로고
    • Repression of Pseudomonas putida phenanthrene-degrading activity by plant root extracts and exudates
    • Rentz, J.A., Alvarez, P.J.J., Schnoor, J.L., 2004. Repression of Pseudomonas putida phenanthrene-degrading activity by plant root extracts and exudates. Environmental Microbiology 6, 574-583.
    • (2004) Environmental Microbiology , vol.6 , pp. 574-583
    • Rentz, J.A.1    Alvarez, P.J.J.2    Schnoor, J.L.3
  • 35
    • 0029949978 scopus 로고    scopus 로고
    • Identification of bacteria in a biodegraded wall painting by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Rölleke, S., Muyzer, G., Wawer, C., Wanner, G., Lubitz, W., 1996. Identification of bacteria in a biodegraded wall painting by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Applied and Environmental Microbiology 62, 2059-2065.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 2059-2065
    • Rölleke, S.1    Muyzer, G.2    Wawer, C.3    Wanner, G.4    Lubitz, W.5
  • 36
    • 20444454635 scopus 로고    scopus 로고
    • Emergence, survival and growth of selected plant species in petroleum-impacted flare pit soils
    • Rutherford, R.M., Dickinson, S.J., Arocena, J.M., 2005. Emergence, survival and growth of selected plant species in petroleum-impacted flare pit soils. Canadian Journal of Soil Science 85, 139-148.
    • (2005) Canadian Journal of Soil Science , vol.85 , pp. 139-148
    • Rutherford, R.M.1    Dickinson, S.J.2    Arocena, J.M.3
  • 39
    • 0002503662 scopus 로고    scopus 로고
    • Mechanisms of phytoremediation: Biochemical and ecological interactions between plants and bacteria
    • Siciliano, S.D., Germida, J.J., 1998. Mechanisms of phytoremediation: biochemical and ecological interactions between plants and bacteria. Environmental Reviews 6, 65-79.
    • (1998) Environmental Reviews , vol.6 , pp. 65-79
    • Siciliano, S.D.1    Germida, J.J.2
  • 40
    • 0346003773 scopus 로고    scopus 로고
    • Changes in microbial community composition and function during a polyaromatic hydrocarbon phytoremediation field trial
    • Siciliano, S.D., Germida, J.J., Banks, M.K., Greer, C.W., 2003. Changes in microbial community composition and function during a polyaromatic hydrocarbon phytoremediation field trial. Applied and Environmental Microbiology 69, 483-489.
    • (2003) Applied and Environmental Microbiology , vol.69 , pp. 483-489
    • Siciliano, S.D.1    Germida, J.J.2    Banks, M.K.3    Greer, C.W.4
  • 41
    • 0242669932 scopus 로고    scopus 로고
    • Secondary plant metabolites in phytoremediation and biotransformation
    • Singer, A.C., Crowley, D.E., Thompson, I.P., 2003. Secondary plant metabolites in phytoremediation and biotransformation. Trends in Biotechnology 21, 123-130.
    • (2003) Trends in Biotechnology , vol.21 , pp. 123-130
    • Singer, A.C.1    Crowley, D.E.2    Thompson, I.P.3
  • 43
    • 0345832056 scopus 로고    scopus 로고
    • Influence of organic and inorganic soil amendments on plant growth in crude oil-contaminated soil
    • White, P.M., Wolf, D.C., Thoma, G.J., Reynolds, C.M., 2003. Influence of organic and inorganic soil amendments on plant growth in crude oil-contaminated soil. International Journal of Phytoremediation 5, 381-397.
    • (2003) International Journal of Phytoremediation , vol.5 , pp. 381-397
    • White, P.M.1    Wolf, D.C.2    Thoma, G.J.3    Reynolds, C.M.4
  • 44
    • 0029669110 scopus 로고    scopus 로고
    • Assessment of the biodegradation potential of psychrotrophic microorganisms
    • Whyte, L.G., Greer, C.W., Inniss, W.E., 1996. Assessment of the biodegradation potential of psychrotrophic microorganisms. Canadian Journal of Microbiology 42, 99-106.
    • (1996) Canadian Journal of Microbiology , vol.42 , pp. 99-106
    • Whyte, L.G.1    Greer, C.W.2    Inniss, W.E.3
  • 46
    • 0029662428 scopus 로고    scopus 로고
    • Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most-probable-number procedure
    • Wrenn, B.A., Venosa, A.D., 1996. Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most-probable-number procedure. Canadian Journal of Microbiology 42, 252-258.
    • (1996) Canadian Journal of Microbiology , vol.42 , pp. 252-258
    • Wrenn, B.A.1    Venosa, A.D.2
  • 47
    • 0031691310 scopus 로고    scopus 로고
    • Carbon-source dependent expression of the PalkB promoter from the Pseudomonas oleovorans alkane degradation pathway
    • Yuste, L., Canosa, I., Rojo, F., 1998. Carbon-source dependent expression of the PalkB promoter from the Pseudomonas oleovorans alkane degradation pathway. Journal of Bacteriology 180, 5218-5226.
    • (1998) Journal of Bacteriology , vol.180 , pp. 5218-5226
    • Yuste, L.1    Canosa, I.2    Rojo, F.3
  • 48
    • 85103229410 scopus 로고    scopus 로고
    • Zuberer, D.A., 1994. Recovery and enumeration of viable bacteria. In: Weaver, R.W. (Ed.), Methods of Soil Analysis. Part 2. Microbiological and Biochemical Properties. SSSA Book Series 5. SSSA, Madison, WI, pp. 119-144.
    • Zuberer, D.A., 1994. Recovery and enumeration of viable bacteria. In: Weaver, R.W. (Ed.), Methods of Soil Analysis. Part 2. Microbiological and Biochemical Properties. SSSA Book Series 5. SSSA, Madison, WI, pp. 119-144.


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