-
1
-
-
84858091383
-
Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data
-
Ahdesmaki, M., Lahdesmaki, H., Gracey, A., Shmulevich, L. and Yli-Harja, O. (2007) 'Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data', BMC Bioinformatics, Vol. 8, p.233.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 233
-
-
Ahdesmaki, M.1
Lahdesmaki, H.2
Gracey, A.3
Shmulevich, L.4
Yli-Harja, O.5
-
2
-
-
25444512069
-
Robust detection of periodic time series measured from biological systems
-
Ahdesmaki, M., Lahdesmaki, H., Pearson, R., Huttunen, H. and Yli-Harja, O. (2005) 'Robust detection of periodic time series measured from biological systems', BMC Bioinformatics, Vol. 6, p.117.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 117
-
-
Ahdesmaki, M.1
Lahdesmaki, H.2
Pearson, R.3
Huttunen, H.4
Yli-Harja, O.5
-
3
-
-
33745615412
-
Unbiased pattern detection in microarray data series
-
DOI 10.1093/bioinformatics/btl121
-
Ahnert, S.E., Willbrand, K., Brown, F.C. and Fink, T.M. (2006) 'Unbiased pattern detection in microarray data series', Bioinformatics, Vol. 22, No. 12, pp.1471-1476. (Pubitemid 43985318)
-
(2006)
Bioinformatics
, vol.22
, Issue.12
, pp. 1471-1476
-
-
Ahnert, S.E.1
Willbrand, K.2
Brown, F.C.S.3
Fink, T.M.A.4
-
4
-
-
33645241609
-
Bayesian detection of periodic mRNA time profiles without use of training examples
-
Andersson, C.R., Isaksson, A. and Gustafsson, M.G. (2006) 'Bayesian detection of periodic mRNA time profiles without use of training examples', BMC Bioinformatics, Vol. 7, p.63.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 63
-
-
Andersson, C.R.1
Isaksson, A.2
Gustafsson, M.G.3
-
5
-
-
29144484744
-
Identification of significant periodic genes in microarray gene expression data
-
Chen, J. (2005) 'Identification of significant periodic genes in microarray gene expression data', BMC Bioinformatics, Vol. 6, p.286.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 286
-
-
Chen, J.1
-
6
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho, R.J., Campbell, M.J., Winzeler, E.A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T.G., Gabrielian, A.E., Landsman, D., Lockhart, D.J. and Davis, R.W. (1998) 'A genome-wide transcriptional analysis of the mitotic cell cycle', Mol. Cell, Vol. 2, No. 1, pp.65-73. (Pubitemid 128378967)
-
(1998)
Molecular Cell
, vol.2
, Issue.1
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.G.7
Gabrielian, A.E.8
Landsman, D.9
Lockhart, D.J.10
Davis, R.W.11
-
7
-
-
33744792286
-
Analysis of a generic model of eukaryotic cell-cycle regulation
-
DOI 10.1529/biophysj.106.081240
-
Csikasz-Nagy, A., Battogtokh, D., Chen, K.C., Novak, B. and Tyson, J.J. (2006) 'Analysis of a generic model of eukaryotic cell-cycle regulation', Biophys J., Vol. 90, No. 12, p.4361-4379. (Pubitemid 43830884)
-
(2006)
Biophysical Journal
, vol.90
, Issue.12
, pp. 4361-4379
-
-
Csikasz-Nagy, A.1
Battogtokh, D.2
Chen, K.C.3
Novak, B.4
Tyson, J.J.5
-
8
-
-
14844285655
-
Comparison of computational methods for the identification of cell cycle-regulated genes
-
DOI 10.1093/bioinformatics/bti093
-
de Lichtenberg, U., Jensen, L.J., Fausboll, A., Jensen, T.S., Bork, P. and Brunak, S. (2005) 'Comparison of computational methods for the identification of cell cycle-regulated genes', Bioinformatics, Vol. 21, No. 7, pp.1164-1171. (Pubitemid 40467941)
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1164-1171
-
-
De Lichtenberg, U.1
Jensen, L.J.2
Fausboll, A.3
Jensen, T.S.4
Bork, P.5
Brunak, S.6
-
9
-
-
51349152854
-
Comparison of pattern detection methods in microarray time series of the segmentation clock
-
Dequeant, M.L., Ahnert, S., Edelsbrunner, H., Fink, T.M., Glynn, E.F., Hattem, G., Kudlicki, A., Mileyko, Y., Morton, J., Mushegian, A.R., Pachter, L., Rowicka, M., Shiu, A., Sturmfels, B. and Pourquie, O. (2008) 'Comparison of pattern detection methods in microarray time series of the segmentation clock', PLoS One, Vol. 3, No. 8, p.e2856.
-
(2008)
PLoS One
, vol.3
, Issue.8
-
-
Dequeant, M.L.1
Ahnert, S.2
Edelsbrunner, H.3
Fink, T.M.4
Glynn, E.F.5
Hattem, G.6
Kudlicki, A.7
Mileyko, Y.8
Morton, J.9
Mushegian, A.R.10
Pachter, L.11
Rowicka, M.12
Shiu, A.13
Sturmfels, B.14
Pourquie, O.15
-
10
-
-
32144464541
-
Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms
-
DOI 10.1093/bioinformatics/bti789
-
Glynn, E.F., Chen, J. and Mushegian, A.R. (2006) 'Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms', Bioinformatics, Vol. 22, No. 3, pp.310-316. (Pubitemid 43205377)
-
(2006)
Bioinformatics
, vol.22
, Issue.3
, pp. 310-316
-
-
Glynn, E.F.1
Chen, J.2
Mushegian, A.R.3
-
11
-
-
0037343132
-
A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription
-
DOI 10.1093/bioinformatics/btg017
-
Johansson, D., Lindgren, P. and Berglund, A. (2003) 'A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription', Bioinformatics, Vol. 19, No. 4, pp.467-473. (Pubitemid 36336512)
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 467-473
-
-
Johansson, D.1
Lindgren, P.2
Berglund, A.3
-
12
-
-
0034334515
-
Dynamic architecture of the yeast cell cycle uncovered by wavelet decomposition of expression microarray data
-
Klevecz, R.R. (2000) 'Dynamic architecture of the yeast cell cycle uncovered by wavelet decomposition of expression microarray data', Functional & Integrative Genomics, Vol. 1, No.3, pp.186-192.
-
(2000)
Functional & Integrative Genomics
, vol.1
, Issue.3
, pp. 186-192
-
-
Klevecz, R.R.1
-
13
-
-
61849128289
-
Robust discovery of periodically expressed genes using the laplace periodogram
-
Liang, K.C., Wang, X. and Li, T.H. (2009) 'Robust discovery of periodically expressed genes using the laplace periodogram', BMC Bioinformatics, Vol. 10, p.15.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 15
-
-
Liang, K.C.1
Wang, X.2
Li, T.H.3
-
14
-
-
34248331790
-
Spectral estimation in unevenly sampled space of periodically expressed microarray time series data
-
Liew, A.W., Xian, J., Wu, S., Smith, D. and Yan, H. (2007) 'Spectral estimation in unevenly sampled space of periodically expressed microarray time series data', BMC Bioinformatics, Vol. 8, p.137.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 137
-
-
Liew, A.W.1
Xian, J.2
Wu, S.3
Smith, D.4
Yan, H.5
-
15
-
-
2442609834
-
A random-periods model for expression of cell-cycle genes
-
DOI 10.1073/pnas.0402285101
-
Liu, D., Umbach, D.M., Peddada, S.D., Li, L., Crockett, P.W. and Weinberg, C.R. (2004) 'A random-periods model for expression of cell-cycle genes', Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 19, pp.7240-7245. (Pubitemid 38638017)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.19
, pp. 7240-7245
-
-
Liu, D.1
Umbach, D.M.2
Peddada, S.D.3
Li, L.4
Crockett, P.W.5
Weinberg, C.R.6
-
16
-
-
1342328547
-
Statistical resynchronization and Bayesian detection of periodically expressed genes
-
DOI 10.1093/nar/gkh205
-
Lu, X., Zhang, W., Qin, Z.S., Kwast, K.E. and Liu, J.S. (2004) 'Statistical resynchronization and Bayesian detection of periodically expressed genes', Nucleic Acids Res., Vol. 32, No. 2, pp.447-455. (Pubitemid 38263035)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.2
, pp. 447-455
-
-
Lu, X.1
Zhang, W.2
Qin, Z.S.3
Kwast, K.E.4
Liu, J.S.5
-
17
-
-
1342288029
-
Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data
-
DOI 10.1093/bioinformatics/btg413
-
Luan, Y. and Li, H. (2004) 'Model-based methods for identifying periodically expressed genes based on time course microarray gene expression data', Bioinformatics, Vol. 20, No. 3, pp.332-339. (Pubitemid 38262764)
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 332-339
-
-
Luan, Y.1
Li, H.2
-
18
-
-
33947329293
-
Permutation test for periodicity in short time series data
-
Ptitsyn, A.A., Zvonic, S. and Gimble, J.M. (2006) 'Permutation test for periodicity in short time series data', BMC Bioinformatics, Vol. 7, Suppl 2, p.S10.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 2
-
-
Ptitsyn, A.A.1
Zvonic, S.2
Gimble, J.M.3
-
19
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P.T., Sherlock, G., Zhang, M.Q., Iyer, V.R., Anders, K., Eisen, M.B., Brown, P.O., Botstein, D. and Futcher, B. (1998) 'Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization', Mol. Biol. Cell, Vol. 9, No. 12, pp.3273-3297. (Pubitemid 28551928)
-
(1998)
Molecular Biology of the Cell
, vol.9
, Issue.12
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
20
-
-
1642464802
-
DNA Microarray Time Series Analysis: Automated Statistical Assessment of Circadian Rhythms in Gene Expression Patterning
-
DOI 10.1016/S0076-6879(04)83007-6
-
Straume, M. (2004) 'DNA microarray time series analysis: automated statistical assessment of circadian rhythms in gene expression patterning', Methods in Enzymology, Vol. 383, pp.149-166. (Pubitemid 38401790)
-
(2004)
Methods in Enzymology
, vol.383
, pp. 149-166
-
-
Straume, M.1
-
21
-
-
84865350443
-
Biochemical oscillations in computational cell biology
-
(Eds.), Marland, E., Fall, C., Wagner, J., Tyson, J. Springer-Verlag, New York
-
Tyson, J. (2002) 'Biochemical oscillations in computational cell biology', An Introductory Text on Computer Modeling in Molecular and Cell Biology, in (Eds.) Marland, E., Fall, C., Wagner, J., Tyson, J. Springer-Verlag, New York.
-
(2002)
An Introductory Text on Computer Modeling in Molecular and Cell Biology
-
-
Tyson, J.1
-
22
-
-
0347093600
-
Identifying periodically expressed trascripts in microarry time series data
-
DOI 10.1093/bioinformatics/btg364
-
Wichert, S., Fokianos, K. and Strimmer, K. (2004) 'Identifying periodically expressed transcripts in microarray time series data', Bioinformatics, Vol. 20, No. 1, pp.5-20. (Pubitemid 38088335)
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 5-20
-
-
Wichert, S.1
Fonkianos, K.2
Strimmer, K.3
-
23
-
-
27544456906
-
Identifying genes from up-down properties of microarray expression series
-
DOI 10.1093/bioinformatics/bti549
-
Willbrand, K., Radvanyi, F., Nadal, J-P., Thiery, J-P. and Fink, T.M.A. (2005) 'Identifying genes from up-down properties of microarray expression series', Bioinformatics, Vol. 21, No. 20, pp.3859-3864. (Pubitemid 41535500)
-
(2005)
Bioinformatics
, vol.21
, Issue.20
, pp. 3859-3864
-
-
Willbrand, K.1
Radvanyi, F.2
Nadal, J.-P.3
Thiery, J.-P.4
Fink, T.M.A.5
-
24
-
-
0035826942
-
Statistical modeling of large microarray data sets to identify stimulus-response profiles
-
DOI 10.1073/pnas.101013198
-
Zhao, L.P., Prentice, R. and Breeden, L. (2001) 'Statistical modeling of large microarray data sets to identify stimulus-response profiles', Proc. Natl. Acad. Sci. USA, Vol. 98, No. 10, pp.5631-5636 (Pubitemid 32435693)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.10
, pp. 5631-5636
-
-
Zhao, L.P.1
Prentice, R.2
Breeden, L.3
|