Pollution Impacts on Bacterioplankton Diversity in a Tropical Urban Coastal Lagoon System

PLoS ONE

Volumn 7, Issue 11, 2012, Pages

  Salloto, Gigliola R B ^a   Cardoso, Alexander M ^b   Coutinho, Felipe H ^c   Pinto, Leonardo H ^c   Vieira, Ricardo P ^c   Chaia, Catia ^a   Lima, Joyce L ^c   Albano, Rodolpho M ^d   Martins, Orlando B ^c   Clementino, Maysa M ^a  

^a National Institute for Quality Control in Health   (Brazil)

^b INSTITUTO NACIONAL DE METROLOGIA   (Brazil)

^c FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^d STATE UNIVERSITY OF RIO DE JANEIRO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; ANTIBIOTIC AGENT; AZTREONAM; BACTERIAL RNA; CEFEPIME; CEFTAZIDIME; CHLORAMPHENICOL; CIPROFLOXACIN; CLARITHROMYCIN; COTRIMOXAZOLE; DOXYCYCLINE; GENTAMICIN; IMIPENEM; MEROPENEM; NORFLOXACIN; PIPERACILLIN PLUS TAZOBACTAM; POLYMYXIN B; RNA 16S; SULFONAMIDE; SULTAMICILLIN; TETRACYCLINE; TIMENTIN; TOBRAMYCIN; WATER;

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; ANTIBIOTIC RESISTANCE; ARTICLE; BACILLI; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIOPLANKTON; BACTERIUM ISOLATION; BACTEROIDIA; BETAPROTEOBACTERIA; BIODIVERSITY; CLOSTRIDIA; CYANOBACTERIUM; DELTAPROTEOBACTERIA; DENATURING GRADIENT GEL ELECTROPHORESIS; ENVIRONMENTAL IMPACT; EPSILONPROTEOBACTERIA; FLAVOBACTERIA; FUSOBACTERIA; GAMMAPROTEOBACTERIA; GENE LIBRARY; GENE SEQUENCE; GENETIC SIMILARITY; GEOGRAPHIC DISTRIBUTION; LAGOON; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANTOMYCETACIA; SEQUENCE ANALYSIS; SPHINGOBACTERIA; STRAIN DIFFERENCE; UNINDEXED SEQUENCE; URBAN AREA; VIBRIO CHOLERAE; WATER POLLUTION;

ANTI-BACTERIAL AGENTS; BACTERIA; BIODIVERSITY; BRAZIL; CITIES; DENATURING GRADIENT GEL ELECTROPHORESIS; ENVIRONMENT; GENE LIBRARY; GEOGRAPHY; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANKTON; RNA, RIBOSOMAL, 16S; SEAWATER; TROPICAL CLIMATE; WATER; WATER MICROBIOLOGY; WATER POLLUTION;

BACTERIA (MICROORGANISMS); OTUS; VIBRIO CHOLERAE;

EID: 84870600719     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0051175     Document Type: Article

References (44)

1. Stewart JR, Gast RJ, Fujioka RS, Solo-Gabriele HM, Meschke JS, et al. (2008) The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs. Environ Health 7: 1476-1480.
2. Wu HC, Sercu B, Van De Werfhorst CL, Wong J, DeSantis ZT, et al. (2010) Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators. PLoS ONE 5: e11285.
3. Gonzalez-Fernandez D, Garrido-Pérez MC, Nebot-Sanz E, Sales-Márquez D, (2010) Fecal Pollution in Coastal Marine Sediments from a Semi-Enclosed Deep Embayment Subjected to Anthropogenic Activities: An Issue to Be Considered in Environmental Quality Management Frameworks Development. Ecohealth. 7: 473-84.
4. Copeland C, Beers B, Thompson M, Pinkerton R, Barrett L, et al. (2009) Faecal contamination of drinking water in a Brazilian shanty town: Importance of household storage and new human faecal marker testing. J Water Health 7: 324-331.
5. Savichtcheva O, Okabe S, (2006) Alternative indicators of fecal pollution: Relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives. Water Res 40: 2463-2476.
6. Zheng G, Yampara-Iquise H, Jones JE, Carson A, (2009) Development of Faecalibacterium 16S rRNA gene marker for identification of human faeces. J Appl Microbiol 106: 634-641.
7. Fujioka RS, (2001) Monitoring coastal marine waters for spore forming bacteria of fecal and soil origin to determine point from non-point source pollution. Water Sci Technol 44: 181-188.
8. Thompson FL, Iida T, Swings J, (2004) Biodiversity of Vibrios. Microbiol Mol Biol Rev 68: 403-431.
9. Barba-Brioso C, Fernández-Caliani JC, Miras A, Cornejo J, Galán E, (2010) Multi-source water pollution in a highly anthropized wetland system associated with the estuary of Huelva (SW Spain). Mar Pollut Bull 60: 1259-69.
10. Ding C, He J, (2010) Effect of antibiotics in the environment on microbial populations. Appl Microbiol Biotechnol 87: 925-941.
11. Bhullar K, Waglechner N, Pawlowski A, Koteva K, Banks ED, et al. (2012) Antibiotic Resistence is Prevalent in an Isolated Cave Microbiome. PLoS ONE 7: e34953.
12. Martínez JL, (2008) Antibiotics and antibiotic resistance genes in natural environments. Science 321: 365-367.
13. de Oliveira AJ, Pinhata JM, (2008) Antimicrobial resistance and species composition of Enterococcus spp. isolated from waters and sands of marine recreational beaches in Southeastern Brazil. Water Res 42: 2242-2250.
14. Cruz OG. A vehiculação microbiana pelas águas [thesis] (1893). Rio de Janeiro: Faculdade de Medicina.
15. Bej AK, Steffan RJ, DiCesare J, Haff L, Atlas RM, (1990) Detection of coliform bacteria in water by polymerase chain reaction and gene probes. Appl Environ Microbiol 56: 307-314.
16. Lee DY, Lauder H, Cruwys H, Falletta P, Beaudette LA, (2008) Development and application of an oligonucleotide microarray and real-time quantitative PCR for detection of wastewater bacterial pathogens. Sci Total Environ 15: 203-211.
17. Malorny B, Hoofar J, Hugas M, Heuvelink A, Fach P, et al. (2003) Interlaboratory diagnostic accuracy of a Salmonella specific PCR-based method. Int J Food Microbiol 31: 241-249.
18. Bej AK, DiCesare JL, Haff L, Atlas RM, (1991) Detection of Escherichia coli and Shigella spp. in water by using the polymerase chain reaction and gene probes for uid. Appl Environ Microbiol. 57(4): 1013-7. Erratum in: Appl Environ Microbiol 57: 2445.
19. Horman A, Rimhanen-Finne R, Maunula L, Von Bonsdorff CH, Torvela N, et al. (2004) Campylobacter spp., Giardia spp., Cryptosporidium spp., noroviruses, and indicator organisms in surface water in southwestern Finland, 2000-2001. Appl Environ Microbiol 70: 87-95.
20. Lee JV, Lai S, Exner M, Lenz J, Gaia V, et al. (2011) An international trial of quantitative PCR for monitoring Legionella in artificial water systems. J Appl Microbiol 110: 1032-1044.
21. Chakravorty S, Aladegbami B, Burday M, Levi M, Marras SA, et al. (2010) Rapid universal identification of bacterial pathogens from clinical cultures by using a novel sloppy molecular beacon melting temperature signature technique. J Clin Microbiol 48: 258-267.
22. Orsi RH, Borowsky ML, Lauer P, Young SK, Nusbaum C, et al. (2008) Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMC Genomics 9: 539-556.
23. CSLI (2010) Performance Standards for Antimicrobial Susceptibility Testing. Twentieth informational Supplement. CSLI document M100-S20. Wayne, PA: Clinical and Laboratory Standards Institute.
24. Vieira RP, Gonzalez AM, Cardoso AM, Oliveira DN, Albano RM, et al. (2008) Relationships between bacterial diversity and environmental variables in a tropical marine environment, Rio de Janeiro. Environ Microbiol 10: 189-199.
25. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, editors. Nucleic Acid Techniques in bacterial systematic. New York: Willey. 115-175.
26. Weisburg WG, Barns SM, Pelletier DA, Lane DJ, (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173: 697-703.
27. Watanabe K, Kodama Y, Harayama S, (2001) Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J Microbiol Methods 44: 253-262.
28. Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, et al. (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31: 442-443.
29. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882.
30. Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
31. Kumar S, Nei M, Dudley J, Tamura K, (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9: 299-306.
32. Lozupone C, Knight R, (2007) Global patters in bacterial diversity. Proc Natl Acad Sci USA 104: 11436-11440.
33. Santoro DO, Romão CM, Clementino MM (2012) Decreased aztreonam susceptibility among Pseudomonas aeruginosa isolates from hospital effluent treatment system and clinical samples. Int J Environ Health Res. DOI:10.1080/09603123.2012.678000.
34. Crump BC, Armbrust EV, Baross JA, (1999) Phylogenetic analysis of particle attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65: 3192-3204.
35. Silveira CB, Vieira RP, Cardoso AM, Paranhos R, Albano RM, et al. (2011) Influence of salinity on bacterioplankton communities from the Brazilian rain forest to the coastal Atlantic Ocean. PLoS ONE 9: e17789.
36. Baquero F, Martínez JL, Cantón R, (2008) Antibiotics and antibiotic resistance in water environments. Curr Opin in Biotechnol. 19: 260-265.
37. Canton R, (2009) Antibiotic resistance genes from the environment: a perspective through newly identified antibiotic resistance mechanisms in the clinical setting. Clin Microbiol Infect 15: 20-25.
38. Wright GD, (2010) Antibiotic resistance in the environment: a link to the clinic? Curr Opin Microbiol 13: 589-594.
39. Rupp ME, Fey PD, (2003) Extended spectrum beta-lactamase (ESBL)-producing Enterobacteriaceae: considerations for diagnosis, prevention and drug treatment. Drugs 63: 353-365.
40. Aiyegoro O, Adewusi A, Oyedemi S, Akinpelu D, Okoh A, (2011) Interactions of antibiotics and methanolic crude extracts of afzelia africana (smith.) against drug resistance bacterial isolates. Int J Mol Sci 12: 4477-4503.
41. Riesenfeld CS, Goodman RM, Handelsman J, (2004) Uncultured soil bacteria are a reservoir of new antibiotic resistance genes. Environ Microbiol 6: 981-989.
42. D'Costa VM, McGrann KM, Hughes DW, Wright GD, (2006) Sampling the antibiotic resistome. Science 311: 374-377.
43. Sommer MO, Dantas G, Church GM, (2009) Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325: 1128-1131.
44. Sommer MO, Church GM, Dantas G, (2010) The human microbiome harbors a diverse reservoir of antibiotic resistance genes. Virulence 1: 299-303.