Highly efficient extraction of cellular nucleic acid associated proteins in vitro with magnetic oxidized carbon nanotubes

Analytical Chemistry

Volumn 84, Issue 23, 2012, Pages 10454-10462

  Zhang, Yi ^a,b   Hu, Zhengyan ^a,b   Qin, Hongqiang ^a,b   Wei, Xiaoluan ^a   Cheng, Kai ^a,b   Liu, Fangjie ^a,b   Wu, Ren'An ^a   Zou, Hanfa ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EXTRACTION EFFICIENCIES; GLOBAL ANALYSIS; IN-VITRO; LARGE-SCALE ANALYSIS; NOVEL STRATEGIES; PROTEIN EXPRESSIONS; PROTEOMIC ANALYSIS; REGULATION FACTORS; SIMPLE APPROACH; STRONG INTERACTION; SYSTEMS BIOLOGY; TARGET PROTEINS;

CARBON NANOTUBES; FACTOR ANALYSIS; GENE EXPRESSION; GENE EXPRESSION REGULATION; NUCLEIC ACIDS; OXIDATION; PROTEINS;

BIOMOLECULES;

CARBON NANOTUBE; DNA BINDING PROTEIN; FERRIC ION; FERRIC OXIDE; NUCLEIC ACID; PROTEOME;

ARTICLE; CHEMISTRY; HUMAN; ISOLATION AND PURIFICATION; LIQUID CHROMATOGRAPHY; LIVER CELL CARCINOMA; LIVER TUMOR; MAGNETISM; METABOLISM; TANDEM MASS SPECTROMETRY; TUMOR CELL CULTURE;

CARCINOMA, HEPATOCELLULAR; CHROMATOGRAPHY, LIQUID; DNA-BINDING PROTEINS; FERRIC COMPOUNDS; HUMANS; LIVER NEOPLASMS; MAGNETICS; NANOTUBES, CARBON; NUCLEIC ACIDS; PROTEOME; TANDEM MASS SPECTROMETRY; TUMOR CELLS, CULTURED;

EID: 84870556570     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac302695u     Document Type: Article

References (40)

1. Kagey, M. H.; Newman, J. J.; Bilodeau, S.; Zhan, Y.; Orlando, D. A.; van Berkum, N. L.; Ebmeier, C. C.; Goossens, J.; Rahl, P. B.; Levine, S. S.; Taatjes, D. J.; Dekker, J.; Young, R. A. Nature 2010, 467, 430-435
2. Greer, E. L.; Shi, Y. Nat. Rev. Genet. 2012, 13, 343-357
3. Thanbichler, M.; Wang, S. C.; Shapiro, L. J. Cell. Biochem. 2005, 96, 506-521
4. Déjardin, J.; Kingston, R. E. Cell 2009, 136, 175-186
5. Harismendy, O.; Notani, D.; Song, X. Y.; Rahim, N. G.; Tanasa, B.; Heintzman, N.; Ren, B.; Fu, X. D.; Topol, E. J.; Rosenfeld, M. G.; Frazer, K. A. Nature 2011, 470, 264-268
6. Llopis, P. M.; Jackson, A. F.; Sliusarenko, O.; Surovtsev, I.; Heinritz, J.; Emonet, T.; Jacobs-Wagner, C. Nature 2010, 466, 77-U90
7. Ho, S. W.; Jona, G.; Chen, C. T. L.; Johnston, M.; Snyder, M. Proc. Natl. Acad. Sci. U. S. A. 2006, 103, 9940-9945
8. Lambert, J.-P.; Mitchell, L.; Rudner, A.; Baetz, K.; Figeys, D. Mol. Cell. Proteomics 2009, 8, 870-882
9. Dekker, J.; Rippe, K.; Dekker, M.; Kleckner, N. Science 2002, 295, 1306-1311
10. Kwon, Y.-S.; Garcia-Bassets, I.; Hutt, K. R.; Cheng, C. S.; Jin, M.; Liu, D.; Benner, C.; Wang, D.; Ye, Z.; Bibikova, M.; Fan, J.-B.; Duan, L.; Glass, C. K.; Rosenfeld, M. G.; Fu, X.-D. Proc. Natl. Acad. Sci. U. S. A. 2007, 104, 4852-4857
11. Nutiu, R.; Friedman, R. C.; Luo, S.; Khrebtukova, I.; Silva, D.; Li, R.; Zhang, L.; Schroth, G. P.; Burge, C. B. Nat. Biotechnol. 2011, 29, 659-664
12. Klein, C.; Aivaliotis, M.; Olsen, J. V.; Falb, M.; Besir, H.; Scheffer, B.; Bisle, B.; Tebbe, A.; Konstantinidis, K.; Siedler, F.; Pfeiffer, F.; Mann, M.; Oesterhelt, D. J. Proteome Res. 2007, 6, 1510-1518
13. Ebenstein, Y.; Gassman, N.; Kim, S.; Antelman, J.; Kim, Y.; Ho, S.; Samuel, R.; Michalet, X.; Weiss, S. Nano Lett. 2009, 9, 1598-1603
14. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207
15. Kocher, T.; Superti-Furga, G. Nat. Methods 2007, 4, 807-815
16. Lamond, A. I.; Uhlen, M.; Horning, S.; Makarov, A.; Robinson, C. V.; Serrano, L.; Hartl, F. U.; Baumeister, W.; Werenskiold, A. K.; Andersen, J. S.; Vorm, O.; Linial, M.; Aebersold, R.; Mann, M. Mol. Cell. Proteomics 2012, 11
17. Choudhary, C.; Mann, M. Nat. Rev. Mol. Cell Biol. 2010, 11, 427-439
18. Deribe, Y. L.; Pawson, T.; Dikic, I. Nat. Struct. Mol. Biol. 2010, 17, 666-672
19. Feng, S.; Ye, M.; Zhou, H.; Jiang, X.; Jiang, X.; Zou, H.; Gong, B. Mol. Cell. Proteomics 2007, 6, 1656-1665
20. Chen, R.; Tan, Y.; Wang, M.; Wang, F.; Yao, Z.; Dong, L.; Ye, M.; Wang, H.; Zou, H. Mol. Cell. Proteomics 2011, DOI: 10.1074/mcp.M110.006445.
21. Chomczynski, P.; Sacchi, N. Anal. Biochem. 1987, 162, 156-159
22. Qiu, H. B.; Wang, Y. S. J. Proteome Res. 2009, 8, 1983-1991
23. Jiang, X.; Jiang, X.; Feng, S.; Tian, R.; Ye, M.; Zou, H. J. Proteome Res. 2007, 6, 1038-1047
24. Bianco, A.; Kostarelos, K.; Partidos, C. D.; Prato, M. Chem. Commun. 2005, 571-577
25. Staii, C.; Johnson, A. T. Nano Lett. 2005, 5, 1774-1778
26. Lu, G.; Maragakis, P.; Kaxiras, E. Nano Lett. 2005, 5, 897-900
27. Wang, J.; Kawde, A. N.; Musameh, M. Analyst (Cambridge, U. K.) 2003, 128, 912-916
28. Munge, B.; Liu, G. D.; Collins, G.; Wang, J. Anal. Chem. 2005, 77, 4662-4666
29. Maehashi, K.; Katsura, T.; Kerman, K.; Takamura, Y.; Matsumoto, K.; Tamiya, E. Anal. Chem. 2007, 79, 782-787
30. Burton, K. Biochem. J. 1956, 62, 315
31. Pan, C.; Xu, S.; Hu, L.; Su, X.; Ou, J.; Zou, H.; Guo, Z.; Zhang, Y.; Guo, B. J. Am. Soc. Mass. Spectrom. 2005, 16, 883-892
32. Wang, F.; Dong, J.; Jiang, X.; Ye, M.; Zou, H. Anal. Chem. 2007, 79, 6599-6606
33. Olsen, J. V.; Schwartz, J. C.; Griep-Raming, J.; Nielsen, M. L.; Damoc, E.; Denisov, E.; Lange, O.; Remes, P.; Taylor, D.; Splendore, M.; Wouters, E. R.; Senko, M.; Makarov, A.; Mann, M.; Horning, S. Mol. Cell. Proteomics 2009, 8, 2759-2769
34. Cox, J.; Matic, I.; Hilger, M.; Nagaraj, N.; Selbach, M.; Olsen, J. V.; Mann, M. Nat. Protoc. 2009, 4, 698-705
35. Kyte, J.; Doolittle, R. F. J. Mol. Biol. 1982, 157, 105-132
36. Bjellqvist, B.; Hughes, G. J.; Pasquali, C.; Paquet, N.; Ravier, F.; Sanchez, J. C.; Frutiger, S.; Hochstrasser, D. Electrophoresis 1993, 14, 1023-1031
37. Bjellqvist, B.; Basse, B.; Olsen, E.; Celis, J. E. Electrophoresis 1994, 15, 529-539
38. Zeeberg, B.; Feng, W.; Wang, G.; Wang, M.; Fojo, A.; Sunshine, M.; Narasimhan, S.; Kane, D.; Reinhold, W.; Lababidi, S.; Bussey, K.; Riss, J.; Barrett, J.; Weinstein, J. Genome Biol. 2003, 4, R28
39. Butter, F.; Scheibe, M.; Morl, M.; Mann, M. Proc. Natl. Acad. Sci. U. S. A. 2009, 106, 10626-10631
40. Singh, R.; Pantarotto, D.; McCarthy, D.; Chaloin, O.; Hoebeke, J.; Partidos, C. D.; Briand, J. P.; Prato, M.; Bianco, A.; Kostarelos, K. J. Am. Chem. Soc. 2005, 127, 4388-4396