메뉴 건너뛰기




Volumn 318, Issue , 2013, Pages 91-100

A novel statistical measure for sequence comparison on the basis of k-word counts

Author keywords

DNA; Phylogenetic analysis; Sequence analysis; Similarity search

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84870524504     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2012.10.035     Document Type: Article
Times cited : (20)

References (67)
  • 1
    • 0022743812 scopus 로고
    • A measure of the similarity of sets of sequences not requiring sequence alignment
    • Blaisdell B.E. A measure of the similarity of sets of sequences not requiring sequence alignment. Proc. Natl. Acad. Sci. USA. 1986, 83:5155-5159.
    • (1986) Proc. Natl. Acad. Sci. USA. , vol.83 , pp. 5155-5159
    • Blaisdell, B.E.1
  • 2
    • 0031191630 scopus 로고    scopus 로고
    • The use of the area under the ROC curve in the evaluation of machine learning algorithms
    • Bradley A.P. The use of the area under the ROC curve in the evaluation of machine learning algorithms. Pattern Recogn. 1997, 30:1145-1159.
    • (1997) Pattern Recogn. , vol.30 , pp. 1145-1159
    • Bradley, A.P.1
  • 3
    • 61549096128 scopus 로고    scopus 로고
    • Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine
    • Chen C., Chen L., Zou X., Cai P. Prediction of protein secondary structure content by using the concept of Chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett. 2009, 16:27-31.
    • (2009) Protein Pept. Lett. , vol.16 , pp. 27-31
    • Chen, C.1    Chen, L.2    Zou, X.3    Cai, P.4
  • 4
    • 0035874091 scopus 로고    scopus 로고
    • Prediction of protein cellular attributes using pseudo amino acid composition
    • (Erratum: Chou, K.C., 2001, 44, 60)
    • Chou K.C. Prediction of protein cellular attributes using pseudo amino acid composition. Proteins. Struct. Funct. Genet. 2001, 43:246-255. (Erratum: Chou, K.C., 2001, 44, 60).
    • (2001) Proteins. Struct. Funct. Genet. , vol.43 , pp. 246-255
    • Chou, K.C.1
  • 5
    • 12744279642 scopus 로고    scopus 로고
    • Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    • Chou K.C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 2005, 21:10-19.
    • (2005) Bioinformatics , vol.21 , pp. 10-19
    • Chou, K.C.1
  • 6
    • 72449203319 scopus 로고    scopus 로고
    • Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology
    • Chou K.C. Pseudo amino acid composition and its applications in bioinformatics, proteomics and system biology. Curr. Proteom. 2009, 6:262-274.
    • (2009) Curr. Proteom. , vol.6 , pp. 262-274
    • Chou, K.C.1
  • 7
    • 77649339280 scopus 로고    scopus 로고
    • Review: recent advances in developing web-servers for predicting protein attributes
    • (openly accessible at
    • Chou K.C., Shen H.B. Review: recent advances in developing web-servers for predicting protein attributes. Nat. Sci. 2009, 2:63-92. (openly accessible at http://www.scirp.org/journal/NS/).
    • (2009) Nat. Sci. , vol.2 , pp. 63-92
    • Chou, K.C.1    Shen, H.B.2
  • 8
    • 79951518208 scopus 로고    scopus 로고
    • Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review)
    • Chou K.C. Some remarks on protein attribute prediction and pseudo amino acid composition (50th Anniversary Year Review). J. Theor. Biol. 2011, 273:236-247.
    • (2011) J. Theor. Biol. , vol.273 , pp. 236-247
    • Chou, K.C.1
  • 9
    • 53749097779 scopus 로고    scopus 로고
    • Markov model plus k-word distributions. a synergy that produces novel statistical measures for sequence comparison
    • Dai Q., Yang Y.C., Wang T.M. Markov model plus k-word distributions. a synergy that produces novel statistical measures for sequence comparison. Bioinformatics 2008, 24:2296-2302.
    • (2008) Bioinformatics , vol.24 , pp. 2296-2302
    • Dai, Q.1    Yang, Y.C.2    Wang, T.M.3
  • 10
    • 76149124179 scopus 로고    scopus 로고
    • Using Gaussian model to improve biological sequence comparison
    • Dai Q., Liu X.Q., Li L.H., Yao Y.H., Han B., Zhu L. Using Gaussian model to improve biological sequence comparison. J. Comput. Chem. 2010, 31:351-361.
    • (2010) J. Comput. Chem. , vol.31 , pp. 351-361
    • Dai, Q.1    Liu, X.Q.2    Li, L.H.3    Yao, Y.H.4    Han, B.5    Zhu, L.6
  • 11
    • 65349165718 scopus 로고    scopus 로고
    • Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition
    • Ding H., Luo L., Lin H. Prediction of cell wall lytic enzymes using Chou's amphiphilic pseudo amino acid composition. Protein Pept. Lett. 2009, 16:351-355.
    • (2009) Protein Pept. Lett. , vol.16 , pp. 351-355
    • Ding, H.1    Luo, L.2    Lin, H.3
  • 12
    • 48649105466 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins. an approach with immune genetic algorithm-based ensemble classifier
    • Ding Y.S., Zhang T.L. Using Chou's pseudo amino acid composition to predict subcellular localization of apoptosis proteins. an approach with immune genetic algorithm-based ensemble classifier. Pattern Recogn. Lett. 2008, 29:1887-1892.
    • (2008) Pattern Recogn. Lett. , vol.29 , pp. 1887-1892
    • Ding, Y.S.1    Zhang, T.L.2
  • 13
    • 78751550064 scopus 로고    scopus 로고
    • Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition
    • Ding H., Liu L., Guo F.B., Huang J., Lin H. Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition. Protein Pept. Lett. 2011, 18:58-63.
    • (2011) Protein Pept. Lett. , vol.18 , pp. 58-63
    • Ding, H.1    Liu, L.2    Guo, F.B.3    Huang, J.4    Lin, H.5
  • 16
    • 77649337793 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
    • Esmaeili M., Mohabatkar H., Mohsenzadeh S. Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses. J. Theor. Biol. 2010, 263:203-209.
    • (2010) J. Theor. Biol. , vol.263 , pp. 203-209
    • Esmaeili, M.1    Mohabatkar, H.2    Mohsenzadeh, S.3
  • 17
    • 38149007012 scopus 로고    scopus 로고
    • Predicting DNA-binding proteins. approached from Chou's pseudo amino acid composition and other specific sequence features
    • Fang Y., Guo Y., Feng Y., Li M. Predicting DNA-binding proteins. approached from Chou's pseudo amino acid composition and other specific sequence features. Amino Acids 2008, 34:103-109.
    • (2008) Amino Acids , vol.34 , pp. 103-109
    • Fang, Y.1    Guo, Y.2    Feng, Y.3    Li, M.4
  • 18
    • 0000122573 scopus 로고
    • Phylip-phylogeny inference package(version 3.2)
    • Felsensein J. Phylip-phylogeny inference package(version 3.2). Cladistics 1989, 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsensein, J.1
  • 19
    • 0023450024 scopus 로고
    • Statistical method for predicting protein coding regions in nucleic acid sequences
    • Fichant G., Gautier C. Statistical method for predicting protein coding regions in nucleic acid sequences. Comput. Appl. Biosci. 1987, 3:287-295.
    • (1987) Comput. Appl. Biosci. , vol.3 , pp. 287-295
    • Fichant, G.1    Gautier, C.2
  • 20
    • 59649123088 scopus 로고    scopus 로고
    • Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
    • Georgiou D.N., Karakasidis T.E., Nieto J.J., Torres A. Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition. J. Theor. Biol. 2009, 257:17-26.
    • (2009) J. Theor. Biol. , vol.257 , pp. 17-26
    • Georgiou, D.N.1    Karakasidis, T.E.2    Nieto, J.J.3    Torres, A.4
  • 21
    • 67649170975 scopus 로고    scopus 로고
    • Textual data compression in computational biology. a synopsis
    • Giancarlo R., Scaturro D., Utro F. Textual data compression in computational biology. a synopsis. Bioinformatics 2009, 25:1575-1586.
    • (2009) Bioinformatics , vol.25 , pp. 1575-1586
    • Giancarlo, R.1    Scaturro, D.2    Utro, F.3
  • 22
    • 0345983651 scopus 로고    scopus 로고
    • Bootstrapping and normalization for enhanced evaluations of pairwise sequence comparison
    • Green R.E., Brenner S.E. Bootstrapping and normalization for enhanced evaluations of pairwise sequence comparison. Proc. IEEE 2002, 90:1834-1847.
    • (2002) Proc. IEEE , vol.90 , pp. 1834-1847
    • Green, R.E.1    Brenner, S.E.2
  • 23
    • 77951992931 scopus 로고    scopus 로고
    • Prediction of G-protein-coupled receptor classes in low homology using Chou's pseudo amino acid composition with approximate entropy and hydrophobicity patterns
    • Gu Q., Ding Y.S., Zhang T.L. Prediction of G-protein-coupled receptor classes in low homology using Chou's pseudo amino acid composition with approximate entropy and hydrophobicity patterns. Protein Pept. Lett. 2010, 17:559-567.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 559-567
    • Gu, Q.1    Ding, Y.S.2    Zhang, T.L.3
  • 24
    • 79953735805 scopus 로고    scopus 로고
    • Predicting protein folding rates using the concept of Chou's pseudo amino acid composition
    • Guo J., Rao N., Liu G., Yang Y., Wang G. Predicting protein folding rates using the concept of Chou's pseudo amino acid composition. J. Comput. Chem. 2011, 32:1612-1617.
    • (2011) J. Comput. Chem. , vol.32 , pp. 1612-1617
    • Guo, J.1    Rao, N.2    Liu, G.3    Yang, Y.4    Wang, G.5
  • 26
    • 79953323878 scopus 로고    scopus 로고
    • Using pseudo amino acid composition to predict protease families by incorporating a series of protein biological features
    • Hu L., Zheng L., Wang Z., Li B., Liu L. Using pseudo amino acid composition to predict protease families by incorporating a series of protein biological features. Protein Pept. Lett. 2011, 18:552-558.
    • (2011) Protein Pept. Lett. , vol.18 , pp. 552-558
    • Hu, L.1    Zheng, L.2    Wang, Z.3    Li, B.4    Liu, L.5
  • 27
    • 43549087105 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location. an approach by approximate entropy
    • Jiang X., Wei R., Zhang T.L., Gu Q. Using the concept of Chou's pseudo amino acid composition to predict apoptosis proteins subcellular location. an approach by approximate entropy. Protein Pept. Lett. 2008, 15:392-396.
    • (2008) Protein Pept. Lett. , vol.15 , pp. 392-396
    • Jiang, X.1    Wei, R.2    Zhang, T.L.3    Gu, Q.4
  • 28
    • 43149099231 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location
    • Jiang X., Wei R., Zhao Y., Zhang T. Using Chou's pseudo amino acid composition based on approximate entropy and an ensemble of AdaBoost classifiers to predict protein subnuclear location. Amino Acids 2008, 34:669-675.
    • (2008) Amino Acids , vol.34 , pp. 669-675
    • Jiang, X.1    Wei, R.2    Zhao, Y.3    Zhang, T.4
  • 29
    • 78650673337 scopus 로고    scopus 로고
    • Prediction of apoptosis protein locations with genetic algorithms and support vector machines through a new mode of pseudo amino acid composition
    • Kandaswamy K.K., Pugalenthi G., Moller S., Hartmann E., Kalies K.U., Suganthan P.N., Martinetz T. Prediction of apoptosis protein locations with genetic algorithms and support vector machines through a new mode of pseudo amino acid composition. Protein Pept. Lett. 2010, 17:1473-1479.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1473-1479
    • Kandaswamy, K.K.1    Pugalenthi, G.2    Moller, S.3    Hartmann, E.4    Kalies, K.U.5    Suganthan, P.N.6    Martinetz, T.7
  • 30
    • 34547844142 scopus 로고    scopus 로고
    • A statistical method for alignment-free comparison of regulatory sequences
    • Kantorovitz M.R., Robinson G.E., Sinha S. A statistical method for alignment-free comparison of regulatory sequences. Bioinformatics 2007, 23:i249-i255.
    • (2007) Bioinformatics , vol.23
    • Kantorovitz, M.R.1    Robinson, G.E.2    Sinha, S.3
  • 31
    • 84870516312 scopus 로고    scopus 로고
    • HIV-1 Subtype and Circulating Recombinant Form (CRF) Reference Sequences. Accessible through.
    • Leitner, T., Korber, B., Daniels, M., Calef, C., Foley, B., 2005. HIV-1 Subtype and Circulating Recombinant Form (CRF) Reference Sequences. Accessible through http://www.hiv.lanl.gov/content/sequence/HIV/REVIEWS/LEITNER2005/leitner.html.
    • (2005)
    • Leitner, T.1    Korber, B.2    Daniels, M.3    Calef, C.4    Foley, B.5
  • 32
    • 47249153247 scopus 로고    scopus 로고
    • Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach
    • Li F.M., Li Q.Z. Predicting protein subcellular location using Chou's pseudo amino acid composition and improved hybrid approach. Protein Pept. Lett. 2008, 15:612-616.
    • (2008) Protein Pept. Lett. , vol.15 , pp. 612-616
    • Li, F.M.1    Li, Q.Z.2
  • 33
    • 67650739405 scopus 로고    scopus 로고
    • Prediction of protein structural classes by Chou's pseudo amino acid composition. approached using continuous wavelet transform and principal component analysis
    • Li Z.C., Zhou X.B., Dai Z., Zou X.Y. Prediction of protein structural classes by Chou's pseudo amino acid composition. approached using continuous wavelet transform and principal component analysis. Amino Acids 2009, 37:415-425.
    • (2009) Amino Acids , vol.37 , pp. 415-425
    • Li, Z.C.1    Zhou, X.B.2    Dai, Z.3    Zou, X.Y.4
  • 34
    • 42749090472 scopus 로고    scopus 로고
    • The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
    • Lin H. The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J. Theor. Biol. 2008, 252:350-356.
    • (2008) J. Theor. Biol. , vol.252 , pp. 350-356
    • Lin, H.1
  • 35
    • 49449087313 scopus 로고    scopus 로고
    • Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition
    • Lin H., Ding H., Feng-Biao Guo F.B., Zhang A.Y., Huang J. Predicting subcellular localization of mycobacterial proteins by using Chou's pseudo amino acid composition. Protein Pept. Lett. 2008, 15:739-744.
    • (2008) Protein Pept. Lett. , vol.15 , pp. 739-744
    • Lin, H.1    Ding, H.2    Feng-Biao Guo, F.B.3    Zhang, A.Y.4    Huang, J.5
  • 36
    • 70350437815 scopus 로고    scopus 로고
    • Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition
    • Lin H., Wang H., Ding H., Chen Y.L., Li Q.Z. Prediction of subcellular localization of apoptosis protein using Chou's pseudo amino acid composition. Acta Biotheoret. 2009, 57:321-330.
    • (2009) Acta Biotheoret. , vol.57 , pp. 321-330
    • Lin, H.1    Wang, H.2    Ding, H.3    Chen, Y.L.4    Li, Q.Z.5
  • 37
    • 0037195172 scopus 로고    scopus 로고
    • Distributional regimes for the number of k-word matches between two random sequences
    • Lippert R.A., Huang H.Y., Waterman M.S. Distributional regimes for the number of k-word matches between two random sequences. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:13980-13989.
    • (2002) Proc. Natl. Acad. Sci. U.S.A. , vol.99 , pp. 13980-13989
    • Lippert, R.A.1    Huang, H.Y.2    Waterman, M.S.3
  • 38
    • 39549123618 scopus 로고    scopus 로고
    • A novel feature-based method for whole genome phylogenetic analysis without alignment. application to HEV genotyping and subtyping
    • Liu Z., Meng J., Sun X. A novel feature-based method for whole genome phylogenetic analysis without alignment. application to HEV genotyping and subtyping. Biochem. Biophys. Res. Commun. 2008, 368:223-230.
    • (2008) Biochem. Biophys. Res. Commun. , vol.368 , pp. 223-230
    • Liu, Z.1    Meng, J.2    Sun, X.3
  • 39
    • 31144477556 scopus 로고    scopus 로고
    • Phylogenetic analysis of global hepatitis E virus sequences. genetic diversity, subtypes and zoonosis
    • Lu L., Li C., Hagedorn C.H. Phylogenetic analysis of global hepatitis E virus sequences. genetic diversity, subtypes and zoonosis. Rev. Med. Virol. 2006, 16:5-36.
    • (2006) Rev. Med. Virol. , vol.16 , pp. 5-36
    • Lu, L.1    Li, C.2    Hagedorn, C.H.3
  • 40
    • 77958497871 scopus 로고    scopus 로고
    • Prediction of cyclin proteins using Chou's pseudo amino acid composition
    • Mohabatkar H. Prediction of cyclin proteins using Chou's pseudo amino acid composition. Protein Pept. Lett. 2010, 17:1207-1214.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1207-1214
    • Mohabatkar, H.1
  • 41
    • 79955564229 scopus 로고    scopus 로고
    • Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
    • Mohabatkar H., Mohammad Beigi M., Esmaeili A. Prediction of GABA(A) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine. J. Theor. Biol. 2011, 281:18-23.
    • (2011) J. Theor. Biol. , vol.281 , pp. 18-23
    • Mohabatkar, H.1    Mohammad Beigi, M.2    Esmaeili, A.3
  • 42
    • 43149097851 scopus 로고    scopus 로고
    • Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization
    • Nanni L., Lumini A. Genetic programming for creating Chou's pseudo amino acid based features for submitochondria localization. Amino Acids 2008, 34:653-660.
    • (2008) Amino Acids , vol.34 , pp. 653-660
    • Nanni, L.1    Lumini, A.2
  • 43
    • 84856475734 scopus 로고    scopus 로고
    • Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information.
    • Nanni L., Lumini A., Gupta D., Garg A. Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information. IEEE/ACM Trans. Comput. Biol. Bioinform. 2008, 9:467-475.
    • (2008) IEEE/ACM Trans. Comput. Biol. Bioinform. , vol.9 , pp. 467-475
    • Nanni, L.1    Lumini, A.2    Gupta, D.3    Garg, A.4
  • 44
    • 12344295510 scopus 로고    scopus 로고
    • A probabilistic measure for alignment-free sequence comparison
    • Pham T.D., Zuegg J. A probabilistic measure for alignment-free sequence comparison. Bioinformatics 2004, 20:3455-3461.
    • (2004) Bioinformatics , vol.20 , pp. 3455-3461
    • Pham, T.D.1    Zuegg, J.2
  • 45
    • 65649105512 scopus 로고    scopus 로고
    • Prediction of G-protein-coupled receptor classes based on the concept of Chou's pseudo amino acid composition. an approach from discrete wavelet transform
    • Qiu J.D., Huang J.H., Liang R.P., Lu X.Q. Prediction of G-protein-coupled receptor classes based on the concept of Chou's pseudo amino acid composition. an approach from discrete wavelet transform. Anal. Biochem. 2009, 390:68-73.
    • (2009) Anal. Biochem. , vol.390 , pp. 68-73
    • Qiu, J.D.1    Huang, J.H.2    Liang, R.P.3    Lu, X.Q.4
  • 46
    • 77955964484 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict enzyme family classes. an approach with support vector machine based on discrete wavelet transform
    • Qiu J.D., Huang J.H., Shi S.P., Liang R.P. Using the concept of Chou's pseudo amino acid composition to predict enzyme family classes. an approach with support vector machine based on discrete wavelet transform. Protein Pept. Lett. 2010, 17:715-722.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 715-722
    • Qiu, J.D.1    Huang, J.H.2    Shi, S.P.3    Liang, R.P.4
  • 47
    • 83655165809 scopus 로고    scopus 로고
    • OligoPred. a web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition
    • Qiu J.D., Suo S.B., Sun X.Y., Shi S.P., Liang R.P. OligoPred. a web-server for predicting homo-oligomeric proteins by incorporating discrete wavelet transform into Chou's pseudo amino acid composition. J. Mol. Graph Model 2011, 30:129-134.
    • (2011) J. Mol. Graph Model , vol.30 , pp. 129-134
    • Qiu, J.D.1    Suo, S.B.2    Sun, X.Y.3    Shi, S.P.4    Liang, R.P.5
  • 48
    • 75149164526 scopus 로고    scopus 로고
    • Alignment-free sequence comparison (I). statistics and power
    • Reinert G., Chew D., Sun F.Z., Waterman M.S. Alignment-free sequence comparison (I). statistics and power. J. Comput. Biol. 2009, 16:1615-1634.
    • (2009) J. Comput. Biol. , vol.16 , pp. 1615-1634
    • Reinert, G.1    Chew, D.2    Sun, F.Z.3    Waterman, M.S.4
  • 49
    • 78649324596 scopus 로고    scopus 로고
    • A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
    • Sahu S.S., Panda G. A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction. Comput. Biol. Chem. 2010, 34:320-327.
    • (2010) Comput. Biol. Chem. , vol.34 , pp. 320-327
    • Sahu, S.S.1    Panda, G.2
  • 50
    • 0036166508 scopus 로고    scopus 로고
    • Integrated gene and species phylogenies from unaligned whole genome protein sequences
    • Stuart G.W., Moffett K., Baker S. Integrated gene and species phylogenies from unaligned whole genome protein sequences. Bioinformatics 2002, 18:100-108.
    • (2002) Bioinformatics , vol.18 , pp. 100-108
    • Stuart, G.W.1    Moffett, K.2    Baker, S.3
  • 51
    • 1342309208 scopus 로고    scopus 로고
    • Metrics for comparing regulatory sequences on the basis of pattern counts
    • Van Helden J. Metrics for comparing regulatory sequences on the basis of pattern counts. Bioinformatics 2004, 20:399-406.
    • (2004) Bioinformatics , vol.20 , pp. 399-406
    • Van Helden, J.1
  • 52
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison-a review
    • Vinga S., Almeida J. Alignment-free sequence comparison-a review. Bioinformatics 2003, 19:513-523.
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 53
    • 78349292948 scopus 로고    scopus 로고
    • Alignment-free sequence comparison (II). theoretical power of comparison statistics
    • Wan L., Reinert G., Sun F.Z., Waterman M.S. Alignment-free sequence comparison (II). theoretical power of comparison statistics. J. Comput. Biol. 2010, 17:1467-1490.
    • (2010) J. Comput. Biol. , vol.17 , pp. 1467-1490
    • Wan, L.1    Reinert, G.2    Sun, F.Z.3    Waterman, M.S.4
  • 54
    • 49849083665 scopus 로고    scopus 로고
    • WSE, a new sequence distance measure based on word frequencies
    • Wang J., Zheng X. WSE, a new sequence distance measure based on word frequencies. Math. Biosci. 2008, 215:78-83.
    • (2008) Math. Biosci. , vol.215 , pp. 78-83
    • Wang, J.1    Zheng, X.2
  • 55
    • 78650649704 scopus 로고    scopus 로고
    • Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature
    • Wang Y.C., Wang X.B., Yang Z.X., Deng N.Y. Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature. Protein Pept. Lett. 2010, 17:1441-1449.
    • (2010) Protein Pept. Lett. , vol.17 , pp. 1441-1449
    • Wang, Y.C.1    Wang, X.B.2    Yang, Z.X.3    Deng, N.Y.4
  • 57
    • 0031437248 scopus 로고    scopus 로고
    • A measure of DNA sequence dissimilarity based on mahalanobis distance between frequencies of words
    • Wu T., Burke J., Davison D. A measure of DNA sequence dissimilarity based on mahalanobis distance between frequencies of words. Biometrics 1997, 53:1431-1439.
    • (1997) Biometrics , vol.53 , pp. 1431-1439
    • Wu, T.1    Burke, J.2    Davison, D.3
  • 58
    • 0035013276 scopus 로고    scopus 로고
    • Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition
    • Wu T., Hsieh Y., Li L. Statistical measures of DNA sequence dissimilarity under Markov chain models of base composition. Biometrics 2001, 57:441-448.
    • (2001) Biometrics , vol.57 , pp. 441-448
    • Wu, T.1    Hsieh, Y.2    Li, L.3
  • 59
    • 34547886848 scopus 로고    scopus 로고
    • Nucleotide composition string selection in HIV-1 subtyping using whole genomes
    • Wu X., Cai Z., Wan X., Hoang X., Geobel R., Lin G. Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Bioinformatics 2007, 23:1744-1752.
    • (2007) Bioinformatics , vol.23 , pp. 1744-1752
    • Wu, X.1    Cai, Z.2    Wan, X.3    Hoang, X.4    Geobel, R.5    Lin, G.6
  • 60
    • 77955668989 scopus 로고    scopus 로고
    • SecretP. identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
    • Yu L., Guo Y., Li Y., Li G., Li M., Luo J., Xiong W., Qin W. SecretP. identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition. J. Theor. Biol. 2010, 267:1-6.
    • (2010) J. Theor. Biol. , vol.267 , pp. 1-6
    • Yu, L.1    Guo, Y.2    Li, Y.3    Li, G.4    Li, M.5    Luo, J.6    Xiong, W.7    Qin, W.8
  • 61
    • 67349244013 scopus 로고    scopus 로고
    • Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
    • Zeng Y.H., Guo Y.Z., Xiao R.Q., Yang L., Yu L.Z., Li M.L. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J. Theor. Biol. 2009, 259:366-372.
    • (2009) J. Theor. Biol. , vol.259 , pp. 366-372
    • Zeng, Y.H.1    Guo, Y.Z.2    Xiao, R.Q.3    Yang, L.4    Yu, L.Z.5    Li, M.L.6
  • 62
    • 50949129207 scopus 로고    scopus 로고
    • Using Chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach
    • Zhang S.W., Chen W., Yang F., Pan Q. Using Chou's pseudo amino acid composition to predict protein quaternary structure: a sequence-segmented PseAAC approach. Amino Acids 2008, 35:591-598.
    • (2008) Amino Acids , vol.35 , pp. 591-598
    • Zhang, S.W.1    Chen, W.2    Yang, F.3    Pan, Q.4
  • 63
    • 43149104120 scopus 로고    scopus 로고
    • Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization. an approach by incorporating evolutionary information and von Neumann entropies
    • Zhang S.W., Zhang Y.L., Yang H.F., Zhao C.H., Pan Q. Using the concept of Chou's pseudo amino acid composition to predict protein subcellular localization. an approach by incorporating evolutionary information and von Neumann entropies. Amino Acids 2008, 34:565-572.
    • (2008) Amino Acids , vol.34 , pp. 565-572
    • Zhang, S.W.1    Zhang, Y.L.2    Yang, H.F.3    Zhao, C.H.4    Pan, Q.5
  • 64
    • 54249139729 scopus 로고    scopus 로고
    • Predicting lipase types by improved Chou's pseudo-amino acid composition
    • Zhang G.Y., Li H.C., Gao J.Q., Fang B.S. Predicting lipase types by improved Chou's pseudo-amino acid composition. Protein Pept. Lett. 2008, 15:1132-1137.
    • (2008) Protein Pept. Lett. , vol.15 , pp. 1132-1137
    • Zhang, G.Y.1    Li, H.C.2    Gao, J.Q.3    Fang, B.S.4
  • 65
    • 45649083292 scopus 로고    scopus 로고
    • Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition
    • Zhang G.Y., Fang B.S. Predicting the cofactors of oxidoreductases based on amino acid composition distribution and Chou's amphiphilic pseudo amino acid composition. J. Theor. Biol. 2008, 253:310-315.
    • (2008) J. Theor. Biol. , vol.253 , pp. 310-315
    • Zhang, G.Y.1    Fang, B.S.2
  • 66
    • 34548439881 scopus 로고    scopus 로고
    • Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
    • Zhou X.B., Chen C., Li Z.C., Zou X.Y. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J. Theor. Biol. 2007, 248:546-551.
    • (2007) J. Theor. Biol. , vol.248 , pp. 546-551
    • Zhou, X.B.1    Chen, C.2    Li, Z.C.3    Zou, X.Y.4
  • 67
    • 78650099168 scopus 로고    scopus 로고
    • Supersecondary structure prediction using Chou's pseudo amino acid composition
    • Zou D., He Z., He J., Xia Y. Supersecondary structure prediction using Chou's pseudo amino acid composition. J. Comput. Chem. 2011, 32:271-278.
    • (2011) J. Comput. Chem. , vol.32 , pp. 271-278
    • Zou, D.1    He, Z.2    He, J.3    Xia, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.