메뉴 건너뛰기




Volumn 20, Issue 12, 2012, Pages 2003-2013

Protein secondary structure determination by constrained single-particle cryo-electron tomography

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE II;

EID: 84870505107     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2012.10.016     Document Type: Article
Times cited : (73)

References (36)
  • 2
    • 69249115197 scopus 로고    scopus 로고
    • Membrane protein structure determination using cryo-electron tomography and 3D image averaging
    • A. Bartesaghi, and S. Subramaniam Membrane protein structure determination using cryo-electron tomography and 3D image averaging Curr. Opin. Struct. Biol. 19 2009 402 407
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 402-407
    • Bartesaghi, A.1    Subramaniam, S.2
  • 3
    • 44449179947 scopus 로고    scopus 로고
    • Classification and 3D averaging with missing wedge correction in biological electron tomography
    • A. Bartesaghi, P. Sprechmann, J. Liu, G. Randall, G. Sapiro, and S. Subramaniam Classification and 3D averaging with missing wedge correction in biological electron tomography J. Struct. Biol. 162 2008 436 450
    • (2008) J. Struct. Biol. , vol.162 , pp. 436-450
    • Bartesaghi, A.1    Sprechmann, P.2    Liu, J.3    Randall, G.4    Sapiro, G.5    Subramaniam, S.6
  • 6
    • 84863256905 scopus 로고    scopus 로고
    • Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography
    • J. Chang, X. Liu, R.H. Rochat, M.L. Baker, and W. Chiu Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography Adv. Exp. Med. Biol. 726 2012 49 90
    • (2012) Adv. Exp. Med. Biol. , vol.726 , pp. 49-90
    • Chang, J.1    Liu, X.2    Rochat, R.H.3    Baker, M.L.4    Chiu, W.5
  • 8
    • 33646784015 scopus 로고    scopus 로고
    • CTF determination and correction in electron cryotomography
    • J.J. Fernández, S. Li, and R.A. Crowther CTF determination and correction in electron cryotomography Ultramicroscopy 106 2006 587 596
    • (2006) Ultramicroscopy , vol.106 , pp. 587-596
    • Fernández, J.J.1    Li, S.2    Crowther, R.A.3
  • 11
    • 33845348200 scopus 로고    scopus 로고
    • FREALIGN: High-resolution refinement of single particle structures
    • N. Grigorieff FREALIGN: high-resolution refinement of single particle structures J. Struct. Biol. 157 2007 117 125
    • (2007) J. Struct. Biol. , vol.157 , pp. 117-125
    • Grigorieff, N.1
  • 12
    • 79953108462 scopus 로고    scopus 로고
    • Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy
    • N. Grigorieff, and S.C. Harrison Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy Curr. Opin. Struct. Biol. 21 2011 265 273
    • (2011) Curr. Opin. Struct. Biol. , vol.21 , pp. 265-273
    • Grigorieff, N.1    Harrison, S.C.2
  • 17
    • 57449110768 scopus 로고    scopus 로고
    • Comparison of single-particle analysis and electron tomography approaches: An overview
    • S. Jonić, C.O.S. Sorzano, and N. Boisset Comparison of single-particle analysis and electron tomography approaches: an overview J. Microsc. 232 2008 562 579
    • (2008) J. Microsc. , vol.232 , pp. 562-579
    • Jonić, S.1    Sorzano, C.O.S.2    Boisset, N.3
  • 18
    • 0029879295 scopus 로고    scopus 로고
    • Computer visualization of three-dimensional image data using IMOD
    • J.R. Kremer, D.N. Mastronarde, and J.R. McIntosh Computer visualization of three-dimensional image data using IMOD J. Struct. Biol. 116 1996 71 76
    • (1996) J. Struct. Biol. , vol.116 , pp. 71-76
    • Kremer, J.R.1    Mastronarde, D.N.2    McIntosh, J.R.3
  • 19
    • 84873139314 scopus 로고    scopus 로고
    • A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography
    • 10.1016/j.jsb.2012.10.010 Published online October 27, 2012
    • O. Kuybeda, G.A. Frank, A. Bartesaghi, M. Borgnia, S. Subramaniam, and G. Sapiro A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography J. Struct. Biol. 2012 10.1016/j.jsb.2012.10.010 Published online October 27, 2012
    • (2012) J. Struct. Biol.
    • Kuybeda, O.1    Frank, G.A.2    Bartesaghi, A.3    Borgnia, M.4    Subramaniam, S.5    Sapiro, G.6
  • 20
    • 32544460568 scopus 로고    scopus 로고
    • The orthogonal tilt reconstruction method: An approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles
    • A.E. Leschziner, and E. Nogales The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles J. Struct. Biol. 153 2006 284 299
    • (2006) J. Struct. Biol. , vol.153 , pp. 284-299
    • Leschziner, A.E.1    Nogales, E.2
  • 21
    • 74249102477 scopus 로고    scopus 로고
    • Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism
    • X. Liu, D.A. Bushnell, D. Wang, G. Calero, and R.D. Kornberg Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism Science 327 2010 206 209
    • (2010) Science , vol.327 , pp. 206-209
    • Liu, X.1    Bushnell, D.A.2    Wang, D.3    Calero, G.4    Kornberg, R.D.5
  • 22
    • 0033377664 scopus 로고    scopus 로고
    • EMAN: Semiautomated software for high-resolution single-particle reconstructions
    • S.J. Ludtke, P.R. Baldwin, and W. Chiu EMAN: semiautomated software for high-resolution single-particle reconstructions J. Struct. Biol. 128 1999 82 97
    • (1999) J. Struct. Biol. , vol.128 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 23
    • 40049105503 scopus 로고    scopus 로고
    • De novo backbone trace of GroEL from single particle electron cryomicroscopy
    • S.J. Ludtke, M.L. Baker, D.-H. Chen, J.-L. Song, D.T. Chuang, and W. Chiu De novo backbone trace of GroEL from single particle electron cryomicroscopy Structure 16 2008 441 448
    • (2008) Structure , vol.16 , pp. 441-448
    • Ludtke, S.J.1    Baker, M.L.2    Chen, D.-H.3    Song, J.-L.4    Chuang, D.T.5    Chiu, W.6
  • 24
    • 0032078256 scopus 로고    scopus 로고
    • A two exposures technique of electron tomography from projections with random orientations and a quasi-Boolean angular reconstitution
    • P. Luigi Bellon, S. Lanzavecchia, and V. Scatturin A two exposures technique of electron tomography from projections with random orientations and a quasi-Boolean angular reconstitution Ultramicroscopy 72 1998 177 186
    • (1998) Ultramicroscopy , vol.72 , pp. 177-186
    • Luigi Bellon, P.1    Lanzavecchia, S.2    Scatturin, V.3
  • 26
    • 83755207591 scopus 로고    scopus 로고
    • Structural analysis of macromolecular assemblies by electron microscopy
    • E.V. Orlova, and H.R. Saibil Structural analysis of macromolecular assemblies by electron microscopy Chem. Rev. 111 2011 7710 7748
    • (2011) Chem. Rev. , vol.111 , pp. 7710-7748
    • Orlova, E.V.1    Saibil, H.R.2
  • 27
    • 0028393194 scopus 로고
    • The ribosome at improved resolution: New techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles
    • P.A. Penczek, R.A. Grassucci, and J. Frank The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles Ultramicroscopy 53 1994 251 270
    • (1994) Ultramicroscopy , vol.53 , pp. 251-270
    • Penczek, P.A.1    Grassucci, R.A.2    Frank, J.3
  • 29
    • 0001477308 scopus 로고
    • An Iterative Method for Finding Stationary Values of a Function of Several Variables
    • M.J.D. Powell An Iterative Method for Finding Stationary Values of a Function of Several Variables Comput. J. 5 1962 147 151
    • (1962) Comput. J. , vol.5 , pp. 147-151
    • Powell, M.J.D.1
  • 30
    • 84985231782 scopus 로고
    • Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli
    • M. Radermacher, T. Wagenknecht, A. Verschoor, and J. Frank Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli J. Microsc. 146 1987 113 136
    • (1987) J. Microsc. , vol.146 , pp. 113-136
    • Radermacher, M.1    Wagenknecht, T.2    Verschoor, A.3    Frank, J.4
  • 31
    • 77953565575 scopus 로고    scopus 로고
    • An approach for de novo structure determination of dynamic molecular assemblies by electron cryomicroscopy
    • B. Sander, M.M. Golas, R. Lührmann, and H. Stark An approach for de novo structure determination of dynamic molecular assemblies by electron cryomicroscopy Structure 18 2010 667 676
    • (2010) Structure , vol.18 , pp. 667-676
    • Sander, B.1    Golas, M.M.2    Lührmann, R.3    Stark, H.4
  • 32
    • 84866078359 scopus 로고    scopus 로고
    • Prevention of overfitting in cryo-EM structure determination
    • S.H.W. Scheres, and S. Chen Prevention of overfitting in cryo-EM structure determination Nat. Methods 9 2012 853 854
    • (2012) Nat. Methods , vol.9 , pp. 853-854
    • Scheres, S.H.W.1    Chen, S.2
  • 33
    • 0037404096 scopus 로고    scopus 로고
    • An approach to examining model dependence in em reconstructions using cross-validation
    • T.R. Shaikh, R. Hegerl, and J. Frank An approach to examining model dependence in EM reconstructions using cross-validation J. Struct. Biol. 142 2003 301 310
    • (2003) J. Struct. Biol. , vol.142 , pp. 301-310
    • Shaikh, T.R.1    Hegerl, R.2    Frank, J.3
  • 34
    • 8844219659 scopus 로고    scopus 로고
    • Noise bias in the refinement of structures derived from single particles
    • A. Stewart, and N. Grigorieff Noise bias in the refinement of structures derived from single particles Ultramicroscopy 102 2004 67 84
    • (2004) Ultramicroscopy , vol.102 , pp. 67-84
    • Stewart, A.1    Grigorieff, N.2
  • 35
    • 0031423486 scopus 로고    scopus 로고
    • Electron Tomography of Single Ice-Embedded Macromolecules: Three-Dimensional Alignment and Classification
    • J. Walz, D. Typke, M. Nitsch, A.J. Koster, R. Hegerl, and W. Baumeister Electron Tomography of Single Ice-Embedded Macromolecules: Three-Dimensional Alignment and Classification J. Struct. Biol. 120 1997 387 395
    • (1997) J. Struct. Biol. , vol.120 , pp. 387-395
    • Walz, J.1    Typke, D.2    Nitsch, M.3    Koster, A.J.4    Hegerl, R.5    Baumeister, W.6
  • 36
    • 84856199455 scopus 로고    scopus 로고
    • IPET and FETR: Experimental approach for studying molecular structure dynamics by cryo-electron tomography of a single-molecule structure
    • L. Zhang, and G. Ren IPET and FETR: experimental approach for studying molecular structure dynamics by cryo-electron tomography of a single-molecule structure PLoS ONE 7 2012 e30249
    • (2012) PLoS ONE , vol.7 , pp. 30249
    • Zhang, L.1    Ren, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.