-
1
-
-
40649105010
-
Markov random field based automatic image alignment for electron tomography
-
F. Amat, F. Moussavi, L.R. Comolli, G. Elidan, K.H. Downing, and M. Horowitz Markov random field based automatic image alignment for electron tomography J. Struct. Biol. 161 2008 260 275
-
(2008)
J. Struct. Biol.
, vol.161
, pp. 260-275
-
-
Amat, F.1
Moussavi, F.2
Comolli, L.R.3
Elidan, G.4
Downing, K.H.5
Horowitz, M.6
-
2
-
-
69249115197
-
Membrane protein structure determination using cryo-electron tomography and 3D image averaging
-
A. Bartesaghi, and S. Subramaniam Membrane protein structure determination using cryo-electron tomography and 3D image averaging Curr. Opin. Struct. Biol. 19 2009 402 407
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 402-407
-
-
Bartesaghi, A.1
Subramaniam, S.2
-
3
-
-
44449179947
-
Classification and 3D averaging with missing wedge correction in biological electron tomography
-
A. Bartesaghi, P. Sprechmann, J. Liu, G. Randall, G. Sapiro, and S. Subramaniam Classification and 3D averaging with missing wedge correction in biological electron tomography J. Struct. Biol. 162 2008 436 450
-
(2008)
J. Struct. Biol.
, vol.162
, pp. 436-450
-
-
Bartesaghi, A.1
Sprechmann, P.2
Liu, J.3
Randall, G.4
Sapiro, G.5
Subramaniam, S.6
-
4
-
-
84862783740
-
Beam-induced motion of vitrified specimen on holey carbon film
-
A.F. Brilot, J.Z. Chen, A. Cheng, J. Pan, S.C. Harrison, C.S. Potter, B. Carragher, R. Henderson, and N. Grigorieff Beam-induced motion of vitrified specimen on holey carbon film J. Struct. Biol. 177 2012 630 637
-
(2012)
J. Struct. Biol.
, vol.177
, pp. 630-637
-
-
Brilot, A.F.1
Chen, J.Z.2
Cheng, A.3
Pan, J.4
Harrison, S.C.5
Potter, C.S.6
Carragher, B.7
Henderson, R.8
Grigorieff, N.9
-
5
-
-
84868573207
-
Movies of ice-embedded particles enhance resolution in electron cryo-microscopy
-
M.G. Campbell, A. Cheng, A.F. Brilot, A. Moeller, D. Lyumkis, D. Veesler, J. Pan, S.C. Harrison, C.S. Potter, B. Carragher, and N. Grigorieff Movies of ice-embedded particles enhance resolution in electron cryo-microscopy Structure 20 2012 1823 1828
-
(2012)
Structure
, vol.20
, pp. 1823-1828
-
-
Campbell, M.G.1
Cheng, A.2
Brilot, A.F.3
Moeller, A.4
Lyumkis, D.5
Veesler, D.6
Pan, J.7
Harrison, S.C.8
Potter, C.S.9
Carragher, B.10
Grigorieff, N.11
-
6
-
-
84863256905
-
Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography
-
J. Chang, X. Liu, R.H. Rochat, M.L. Baker, and W. Chiu Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography Adv. Exp. Med. Biol. 726 2012 49 90
-
(2012)
Adv. Exp. Med. Biol.
, vol.726
, pp. 49-90
-
-
Chang, J.1
Liu, X.2
Rochat, R.H.3
Baker, M.L.4
Chiu, W.5
-
7
-
-
37349002528
-
A dose-rate effect in single-particle electron microscopy
-
J.Z. Chen, C. Sachse, C. Xu, T. Mielke, C.M.T. Spahn, and N. Grigorieff A dose-rate effect in single-particle electron microscopy J. Struct. Biol. 161 2008 92 100
-
(2008)
J. Struct. Biol.
, vol.161
, pp. 92-100
-
-
Chen, J.Z.1
Sachse, C.2
Xu, C.3
Mielke, T.4
Spahn, C.M.T.5
Grigorieff, N.6
-
8
-
-
33646784015
-
CTF determination and correction in electron cryotomography
-
J.J. Fernández, S. Li, and R.A. Crowther CTF determination and correction in electron cryotomography Ultramicroscopy 106 2006 587 596
-
(2006)
Ultramicroscopy
, vol.106
, pp. 587-596
-
-
Fernández, J.J.1
Li, S.2
Crowther, R.A.3
-
11
-
-
33845348200
-
FREALIGN: High-resolution refinement of single particle structures
-
N. Grigorieff FREALIGN: high-resolution refinement of single particle structures J. Struct. Biol. 157 2007 117 125
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 117-125
-
-
Grigorieff, N.1
-
12
-
-
79953108462
-
Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy
-
N. Grigorieff, and S.C. Harrison Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy Curr. Opin. Struct. Biol. 21 2011 265 273
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 265-273
-
-
Grigorieff, N.1
Harrison, S.C.2
-
13
-
-
0000372814
-
Angular reconstitution in three-dimensional electron microscopy. Historical and theoretical aspects
-
M. Van Heel, E.V. Orlova, G. Harauz, H. Stark, P. Dube, F. Zemlin, and M. Schatz Angular reconstitution in three-dimensional electron microscopy. Historical and theoretical aspects Scanning Microscopy Elk Grove Village Il 11 1997 195 210
-
(1997)
Scanning Microscopy Elk Grove Village Il
, vol.11
, pp. 195-210
-
-
Van Heel, M.1
Orlova, E.V.2
Harauz, G.3
Stark, H.4
Dube, P.5
Zemlin, F.6
Schatz, M.7
-
14
-
-
20244379996
-
Single-particle electron cryo-microscopy: Towards atomic resolution
-
M. van Heel, B. Gowen, R. Matadeen, E.V. Orlova, R. Finn, T. Pape, D. Cohen, H. Stark, R. Schmidt, M. Schatz, and A. Patwardhan Single-particle electron cryo-microscopy: towards atomic resolution Q. Rev. Biophys. 33 2000 307 369
-
(2000)
Q. Rev. Biophys.
, vol.33
, pp. 307-369
-
-
Van Heel, M.1
Gowen, B.2
Matadeen, R.3
Orlova, E.V.4
Finn, R.5
Pape, T.6
Cohen, D.7
Stark, H.8
Schmidt, R.9
Schatz, M.10
Patwardhan, A.11
-
15
-
-
80855132610
-
Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy
-
R. Henderson, S. Chen, J.Z. Chen, N. Grigorieff, L.A. Passmore, L. Ciccarelli, J.L. Rubinstein, R.A. Crowther, P.L. Stewart, and P.B. Rosenthal Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy J. Mol. Biol. 413 2011 1028 1046
-
(2011)
J. Mol. Biol.
, vol.413
, pp. 1028-1046
-
-
Henderson, R.1
Chen, S.2
Chen, J.Z.3
Grigorieff, N.4
Passmore, L.A.5
Ciccarelli, L.6
Rubinstein, J.L.7
Crowther, R.A.8
Stewart, P.L.9
Rosenthal, P.B.10
-
17
-
-
57449110768
-
Comparison of single-particle analysis and electron tomography approaches: An overview
-
S. Jonić, C.O.S. Sorzano, and N. Boisset Comparison of single-particle analysis and electron tomography approaches: an overview J. Microsc. 232 2008 562 579
-
(2008)
J. Microsc.
, vol.232
, pp. 562-579
-
-
Jonić, S.1
Sorzano, C.O.S.2
Boisset, N.3
-
18
-
-
0029879295
-
Computer visualization of three-dimensional image data using IMOD
-
J.R. Kremer, D.N. Mastronarde, and J.R. McIntosh Computer visualization of three-dimensional image data using IMOD J. Struct. Biol. 116 1996 71 76
-
(1996)
J. Struct. Biol.
, vol.116
, pp. 71-76
-
-
Kremer, J.R.1
Mastronarde, D.N.2
McIntosh, J.R.3
-
19
-
-
84873139314
-
A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography
-
10.1016/j.jsb.2012.10.010 Published online October 27, 2012
-
O. Kuybeda, G.A. Frank, A. Bartesaghi, M. Borgnia, S. Subramaniam, and G. Sapiro A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography J. Struct. Biol. 2012 10.1016/j.jsb.2012.10.010 Published online October 27, 2012
-
(2012)
J. Struct. Biol.
-
-
Kuybeda, O.1
Frank, G.A.2
Bartesaghi, A.3
Borgnia, M.4
Subramaniam, S.5
Sapiro, G.6
-
20
-
-
32544460568
-
The orthogonal tilt reconstruction method: An approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles
-
A.E. Leschziner, and E. Nogales The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles J. Struct. Biol. 153 2006 284 299
-
(2006)
J. Struct. Biol.
, vol.153
, pp. 284-299
-
-
Leschziner, A.E.1
Nogales, E.2
-
21
-
-
74249102477
-
Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism
-
X. Liu, D.A. Bushnell, D. Wang, G. Calero, and R.D. Kornberg Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism Science 327 2010 206 209
-
(2010)
Science
, vol.327
, pp. 206-209
-
-
Liu, X.1
Bushnell, D.A.2
Wang, D.3
Calero, G.4
Kornberg, R.D.5
-
22
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
S.J. Ludtke, P.R. Baldwin, and W. Chiu EMAN: semiautomated software for high-resolution single-particle reconstructions J. Struct. Biol. 128 1999 82 97
-
(1999)
J. Struct. Biol.
, vol.128
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
-
23
-
-
40049105503
-
De novo backbone trace of GroEL from single particle electron cryomicroscopy
-
S.J. Ludtke, M.L. Baker, D.-H. Chen, J.-L. Song, D.T. Chuang, and W. Chiu De novo backbone trace of GroEL from single particle electron cryomicroscopy Structure 16 2008 441 448
-
(2008)
Structure
, vol.16
, pp. 441-448
-
-
Ludtke, S.J.1
Baker, M.L.2
Chen, D.-H.3
Song, J.-L.4
Chuang, D.T.5
Chiu, W.6
-
24
-
-
0032078256
-
A two exposures technique of electron tomography from projections with random orientations and a quasi-Boolean angular reconstitution
-
P. Luigi Bellon, S. Lanzavecchia, and V. Scatturin A two exposures technique of electron tomography from projections with random orientations and a quasi-Boolean angular reconstitution Ultramicroscopy 72 1998 177 186
-
(1998)
Ultramicroscopy
, vol.72
, pp. 177-186
-
-
Luigi Bellon, P.1
Lanzavecchia, S.2
Scatturin, V.3
-
25
-
-
84872024281
-
Cryo-electron microscopy: A primer for the non-microscopist
-
10.1111/febs.12078 Published online November 27, 2012
-
J. Milne, M. Borgnia, A. Bartesaghi, E. Tran, L. Earl, D. Schauder, J. Lengyel, J. Pierson, A. Patwardhan, and S. Subramaniam Cryo-electron microscopy: a primer for the non-microscopist FEBS J. 2012 10.1111/febs.12078 Published online November 27, 2012
-
(2012)
FEBS J.
-
-
Milne, J.1
Borgnia, M.2
Bartesaghi, A.3
Tran, E.4
Earl, L.5
Schauder, D.6
Lengyel, J.7
Pierson, J.8
Patwardhan, A.9
Subramaniam, S.10
-
26
-
-
83755207591
-
Structural analysis of macromolecular assemblies by electron microscopy
-
E.V. Orlova, and H.R. Saibil Structural analysis of macromolecular assemblies by electron microscopy Chem. Rev. 111 2011 7710 7748
-
(2011)
Chem. Rev.
, vol.111
, pp. 7710-7748
-
-
Orlova, E.V.1
Saibil, H.R.2
-
27
-
-
0028393194
-
The ribosome at improved resolution: New techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles
-
P.A. Penczek, R.A. Grassucci, and J. Frank The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles Ultramicroscopy 53 1994 251 270
-
(1994)
Ultramicroscopy
, vol.53
, pp. 251-270
-
-
Penczek, P.A.1
Grassucci, R.A.2
Frank, J.3
-
28
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng, and T.E. Ferrin UCSF Chimera - a visualization system for exploratory research and analysis J. Comput. Chem. 25 2004 1605 1612
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
29
-
-
0001477308
-
An Iterative Method for Finding Stationary Values of a Function of Several Variables
-
M.J.D. Powell An Iterative Method for Finding Stationary Values of a Function of Several Variables Comput. J. 5 1962 147 151
-
(1962)
Comput. J.
, vol.5
, pp. 147-151
-
-
Powell, M.J.D.1
-
30
-
-
84985231782
-
Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli
-
M. Radermacher, T. Wagenknecht, A. Verschoor, and J. Frank Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli J. Microsc. 146 1987 113 136
-
(1987)
J. Microsc.
, vol.146
, pp. 113-136
-
-
Radermacher, M.1
Wagenknecht, T.2
Verschoor, A.3
Frank, J.4
-
31
-
-
77953565575
-
An approach for de novo structure determination of dynamic molecular assemblies by electron cryomicroscopy
-
B. Sander, M.M. Golas, R. Lührmann, and H. Stark An approach for de novo structure determination of dynamic molecular assemblies by electron cryomicroscopy Structure 18 2010 667 676
-
(2010)
Structure
, vol.18
, pp. 667-676
-
-
Sander, B.1
Golas, M.M.2
Lührmann, R.3
Stark, H.4
-
32
-
-
84866078359
-
Prevention of overfitting in cryo-EM structure determination
-
S.H.W. Scheres, and S. Chen Prevention of overfitting in cryo-EM structure determination Nat. Methods 9 2012 853 854
-
(2012)
Nat. Methods
, vol.9
, pp. 853-854
-
-
Scheres, S.H.W.1
Chen, S.2
-
33
-
-
0037404096
-
An approach to examining model dependence in em reconstructions using cross-validation
-
T.R. Shaikh, R. Hegerl, and J. Frank An approach to examining model dependence in EM reconstructions using cross-validation J. Struct. Biol. 142 2003 301 310
-
(2003)
J. Struct. Biol.
, vol.142
, pp. 301-310
-
-
Shaikh, T.R.1
Hegerl, R.2
Frank, J.3
-
34
-
-
8844219659
-
Noise bias in the refinement of structures derived from single particles
-
A. Stewart, and N. Grigorieff Noise bias in the refinement of structures derived from single particles Ultramicroscopy 102 2004 67 84
-
(2004)
Ultramicroscopy
, vol.102
, pp. 67-84
-
-
Stewart, A.1
Grigorieff, N.2
-
35
-
-
0031423486
-
Electron Tomography of Single Ice-Embedded Macromolecules: Three-Dimensional Alignment and Classification
-
J. Walz, D. Typke, M. Nitsch, A.J. Koster, R. Hegerl, and W. Baumeister Electron Tomography of Single Ice-Embedded Macromolecules: Three-Dimensional Alignment and Classification J. Struct. Biol. 120 1997 387 395
-
(1997)
J. Struct. Biol.
, vol.120
, pp. 387-395
-
-
Walz, J.1
Typke, D.2
Nitsch, M.3
Koster, A.J.4
Hegerl, R.5
Baumeister, W.6
-
36
-
-
84856199455
-
IPET and FETR: Experimental approach for studying molecular structure dynamics by cryo-electron tomography of a single-molecule structure
-
L. Zhang, and G. Ren IPET and FETR: experimental approach for studying molecular structure dynamics by cryo-electron tomography of a single-molecule structure PLoS ONE 7 2012 e30249
-
(2012)
PLoS ONE
, vol.7
, pp. 30249
-
-
Zhang, L.1
Ren, G.2
|