Reemergence of new variant G3 rotavirus in Japanese pediatric patients, 2009-2011

Infection, Genetics and Evolution

Volumn 13, Issue 1, 2013, Pages 168-174

  Thongprachum, Aksara ^a,b   Chan it, Wisoot ^a   Khamrin, Pattara ^c   Okitsu, Shoko ^a,b   Nishimura, Shuichi ^b   Kikuta, Hideaki ^b   Yamamoto, Atsuko ^b   Sugita, Kumiko ^b   Baba, Tsuneyoshi ^b   Mizuguchi, Masashi ^a   Maneekarn, Niwat ^c   Hayakawa, Satoshi ^b   Ushijima, Hiroshi ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b NIHON UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c Faculty of Medicine Chiang Mai University   (Thailand)

Author keywords

G genotype; Gastroenteritis; Japan; P genotype; Rotavirus

Indexed keywords

ACUTE GASTROENTERITIS; ARTICLE; CHILD; CONTROLLED STUDY; FECES ANALYSIS; GENOTYPE; HUMAN; JAPAN; JAPANESE; MAJOR CLINICAL STUDY; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; PREVALENCE; PRIORITY JOURNAL; ROTAVIRUS; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS STRAIN;

ADOLESCENT; AGE FACTORS; ANTIGENS, VIRAL; ASIAN CONTINENTAL ANCESTRY GROUP; CAPSID PROTEINS; CHILD; CHILD, PRESCHOOL; COMMUNICABLE DISEASES, EMERGING; GASTROENTERITIS; GENOTYPE; HISTORY, 21ST CENTURY; HUMANS; INFANT; INFANT, NEWBORN; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; PREVALENCE; ROTAVIRUS; ROTAVIRUS INFECTIONS;

ROTAVIRUS;

EID: 84870502734     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.09.010     Document Type: Article

References (49)

1. Bányai K., Bogdán A., Domonkos G., Kisfali P., Molnár P., Tóth A., Melegh B., Martella V., Gentsch J.R., Szucs G. Genetic diversity and zoonotic potential of human rotavirus strains, 2003-2006, Hungary. J. Med. Virol. 2009, 81:362-370.
2. Bányai K., Bogdán A., Kisfali P., Molnár P., Mihály I., Melegh B., Martella V., Gentsch J.R., Szücs G. Emergence of serotype G12 rotaviruses, Hungary. Emerg. Infect. Dis. 2007, 13:916-919.
3. Bányai K., László B., Duque J., Steele A.D., Nelson E.A., Gentsch J.R., Parashar U.D. Systematic review of regional and temporal trends in global rotavirus strain diversity in the prerotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs. Vaccine 2012, 30:122-130.
4. Cashman O., Collins P.J., Lennon G., Cryan B., Martella V., Fanning S., Staines A., O'Shea H. Molecular characterization of group A rotaviruses detected in children with gastroenteritis in Ireland in 2006-2009. Epidemiol. Infect. 2012, 140:247-259.
5. Castello A.A., Nakagomi T., Nakagomi O., Jiang B., Kang J.O., Glass R.I., Glikmann G., Gentsch J.R. Characterization of genotype P[9]G12 rotavirus strains from Argentina: high similarity with Japanese and Korean G12 strains. J. Med. Virol. 2009, 81:371-381.
6. Centers for Disease Control and Prevention (CDC) Rotavirus surveillance-worldwide, 2001-2008. MMWR Morb. Mortal. Wkly. Rep. 2008, 57:1255-1257.
7. Chanit W., Thongprachum A., Dey S.K., Phan T.G., Khamrin P., Okitsu S., Nishimura S., Kobayashi M., Kikuta H., Baba T., Yamamoto A., Sugita K., Hashira S., Tajima T., Ishida S., Mizuguchi M., Ushijima H. Detection and genetic characterization of rotavirus infections in non-hospitalized children with acute gastroenteritis in Japan, 2007-2009. Infect. Genet. Evol. 2011, 11:415-422.
8. Das S., Varghese V., Chaudhury S., Barman P., Mahapatra S., Kojima K., Bhattacharya S.K., Krishnan T., Ratho R.K., Chhotray G.P., Phukan A.C., Kobayashi N., Naik T.N. Emergence of novel human group A rotavirus G12 strains in India. J. Clin. Microbiol. 2003, 41:2760-2762.
9. Dennehy P.H. Effects of vaccine on rotavirus disease in the pediatric population. Curr. Opin. Pediatr. 2012, 24:76-84.
10. Dennehy P.H., Vesikari T., Matson D.O., Itzler R.F., Dallas M.J., Goveia M.G., DiNubile M.J., Heaton P.M., Ciarlet M. Efficacy of the pentavalent rotavirus vaccine, RotaTeq® (RV5), between doses of a 3-dose series and with less than 3 doses (incomplete regimen). Hum. Vaccine 2011, 7:563-568.
11. Dey S.K., Thongprachum A., Ota Y., Phan T.G., Nishimura S., Mizuguchi M., Okitsu S., Ushijima H. Molecular and epidemiological trend of rotavirus infection among infants and children in Japan. Infect. Genet. Evol. 2009, 9:955-961.
12. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., Das B.K., Bhan M.K. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 1992, 30:1365-1373.
13. Glass R.I., Bresee J.S., Turcios R., Fischer T.K., Parashar U.D., Steele A.D. Rotavirus vaccines: targeting the developing world. J. Infect. Dis. 2005, 192:160-166.
14. Gouvea V., Glass R.I., Woods P., Taniguchi K., Clark H.F., Forrester B., Fang Z.Y. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J. Clin. Microbiol. 1990, 28:276-282.
15. Huang J.A., Wang L., Firth S., Phelps A., Reeves P., Holmes I. Rotavirus VP7 epitope mapping using fragments of VP7 displayed on phages. Vaccine 2000, 18:2257-2265.
16. Japhet M.O., Adesina O.A., Famurewa O., Svensson L., Nordgren J. Molecular epidemiology of rotavirus and norovirus in Ile-Ife, Nigeria: high prevalence of G12P[8] rotavirus strains and detection of a rare norovirus genotype. J. Med. Virol. 2012, 84:1489-1496.
17. Jin Y., Ye X.H., Fang Z.Y., Li Y.N., Yang X.M., Dong Q.L., Huang X. Molecular epidemic features and variation of rotavirus among children with diarrhea in Lanzhou, China, 2001-2006. World J. Pediatr. 2008, 4:197-201.
18. Kamiya H., Nakano T., Kamiya H., Yui A., Taniguchi K., Parashar U. Rotavirus epidemiology study group. Rotavirus-associated acute gastroenteritis hospitalizations among Japanese children aged <5years: active rotavirus surveillance in Mie Prefecture, Japan. Jpn. J. Infect. Dis. 2011, 64:482-487.
19. Kawai K., O'Brien M.A., Goveia M.G., Mast T.C., EI Khoury A.C. Burden of rotavirus gastroenteritis and distribution of rotavirus strains in Asia: a systematic review. Vaccine 2012, 30:1244-1254.
20. Kawamura N., Tokoeda Y., Oshima M., Okahata H., Tsutsumi H., Van Doorn L.J., Muto H., Smolenov I., Suryakiran P.V., Han H.H. Efficacy, safety and immunogenicity of RIX4414 in Japanese infants during the first two years of life. Vaccine 2011, 29:6335-6341.
21. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
22. Lennon G., Reidy N., Cryan B., Fanning S., O'Shea H. Changing profile of rotavirus in Ireland: predominance of P[8] and emergence of P[6] and P[9] in mixed infections. J. Med. Virol. 2008, 80:524-530.
23. Li C., Chan P., Tang J. Prevalence of diarrhea viruses in hospitalized children in Hong Kong in 2008. J. Med. Virol. 2008, 81:1903-1911.
24. Maneekarn N., Ushijima H. Epidemiology of rotavirus infection in Thailand. Pediatr. Int. 2000, 42:415-421.
25. Matthijnssens J., Bilcke J., Ciarlet M., Martella V., Bányai K., Rahman M., Zeller M., Beutels P., Van Damme P., Van Ranst M. Rotavirus disease and vaccination: impact on genotype diversity. Future Microbiol. 2009, 4:1303-1316.
26. Matthijnssens J., Mino S., Papp H., Potgieter C., Novo L., Heylen E., Zeller M., Garaicoeachea L., Badaracco A., Lengyel G., Kisfali P., Collins P., Ciarlet M., O'Shea H., Parreno V., Banyai K., Barrandeguy M., Van Ranst M. Complete molecular genome analyses of equine rotavirus A strains from different continents reveal several new genotypes and a largely conserved genotype constellation. J. Gen. Virol. 2011, 93:866-875.
27. Mitui M.T., Chan P.K., Nelson E.A., Leung T.F., Nishizono A., Ahmed K. Co-dominance of G1 and emerging G3 rotaviruses in Hong Kong: a three-year surveillance in three major hospitals. J. Clin. Virol. 2011, 50:325-333.
28. Naghipour M., Nakagomi T., Nakagomi O. Issues with reducing the rotavirus-associated mortality by vaccination in developing countries. Vaccine 2008, 26:3236-3241.
29. Ngo T.C., Nguyen B.M., Dang D.A., Nguyen H.T., Nguyen T.T., Tran V.N., Vu T.T., Ogino M., Alam M.M., Nakagomi T., Nakagomi O., Yamashiro T. Molecular epidemiology of rotavirus diarrhoea among children in Haiphong, Vietnam: the emergence of G3 rotavirus. Vaccine 2009, 27:75-80.
30. O'Ryan M., Linhares A. Update on Rotarix™: an oral human rotavirus vaccine. Expert Rev. 2009, 8:1627-1641.
31. O'Halloran F., Lynch M., Cryan B., O'Shea H., Fanning S. Molecular characterization of rotavirus in Ireland: detection of novel strains circulating in the population. J. Clin. Microbiol. 2000, 38:3370-3374.
32. Okame M., Akihara S., Hansman G., Hainian Y., Tran H.T., Phan T.G., Yagyu F., Okitsu S., Ushijima H. Existence of multiple genotypes associated with acute gastroenteritis during 6year survey of norovirus infection in Japan. J. Med. Virol. 2006, 78:1318-1324.
33. Okitsu-Negishi S., Nguyen T.A., Phan T.G., Ushijima H. Molecular epidemiology of viral gastroenteritis in Asia. Pediatr. Int. 2004, 46:245-252.
34. Parashar U.D., Hummelman E.G., Bresee J.S., Miller M.A., Glass R.I. Global illness and deaths caused by rotavirus disease in children. Emerg. Infect. Dis. 2003, 9:565-572.
35. Phan T.G., Khamrin P., Quang T.D., Dey S.K., Takanashi S., Okitsu S., Maneekarn N., Ushijima H. Detection and genetic characterization of group A rotavirus strains circulating among children with acute gastroenteritis in Japan. J. Virol. 2007, 81:4645-4653.
36. Phan T.G., Trinh Q.D., Khamrin P., Kaneshi K., Ueda Y., Nakaya S., Nishimura S., Sugita K., Nishimura T., Yamamoto A., Takanashi S., Yagyu F., Okitsu S., Ushijima H. Emergence of new variant rotavirus G3 among infants and children with acute gastroenteritis in Japan during 2003-2004. Clin. Lab. 2007, 53:41-48.
37. Phan T.G., Okitsu S., Maneekarn N., Ushijima H. Genetic heterogeneity, evolution and recombination in emerging G9 rotaviruses. Infect. Genet. Evol. 2007, 7:656-663.
38. Pongsuwanna Y., Guntapong R., Chiwakul M., Tacharoenmuang R., Onvimala N., Wakuda M., Kobayashi N., Taniguchi K. Detection of a human rotavirus with G12 and P[9] specificity in Thailand. J. Clin. Microbiol. 2002, 40:1390-1394.
39. Rahman M., Alamgir A.S., Saiada F., Hassan Z., Faruque A.S., Cravioto A., Azim T. Co-circulation of G1, G2 and G9 rotaviruses in hospitalized patients in Bangladesh during 2006-2009. Hum. Vaccine 2011, 7:929-933.
40. Reidy N., O'Halloran F., Fanning S., Cryan B., O'Shea H. Emergence of G3 and G9 rotavirus and increased incidence of mixed infections in the southern region of Ireland 2001-2004. J. Med. Virol. 2005, 77:571-578.
41. Ruiz-Palacios G.M., Pérez-Schael I., Velázquez F.R., Abate H., Breuer T., Clemens S.C., Cheuvart B., Espinoza F., Gillard P., Innis B.L., Cervantes Y., Linhares A.C., López P., Macías-Parra M., Ortega-Barría E., Richardson V., Rivera-Medina D.M., Rivera L., Salinas B., Pavía-Ruz N., Salmerón J., Rüttimann R., Tinoco J.C., Rubio P., Nuñez E., Guerrero M.L., Yarzábal J.P., Damaso S., Tornieporth N., Sáez-Llorens X., Vergara R.F., Vesikari T., Bouckenooghe A., Clemens R., De Vos B., O'Ryan M. Human rotavirus vaccine study group. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N. Engl. J. Med. 2006, 354:11-12.
42. Samajdar S., Varghese V., Barman P., Ghosh S., Mitra U., Dutta P., Bhattacharya S.K., Narasimham M.V., Panda P., Krishnan T., Kobayashi N., Naik T.N. Changing pattern of human group A rotaviruses: emergence of G12 as an important pathogen among children in eastern India. J. Clin. Virol. 2006, 36:183-188.
43. Santos N., Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 2005, 15:29-56.
44. Santos N., Volotão E.M., Soares C.C., Campos G.S., Sardi S.I., Hoshino Y. Predominance of rotavirus genotype G9 during the 1999, 2000, and 2002 seasons among hospitalized children in the city of Salvador, Bahia, Brazil: implications for future vaccine strategies. J. Clin. Microbiol. 2005, 43:4064-4069.
45. Taniguchi K., Hoshino Y., Nishikawa K., Green K.Y., Maloy W.L., Morita Y., Urasawa S., Kapikian A.Z., Chanock R.M., Gorziglia M. Cross-reactive and serotype-specific neutralization epitopes on VP7 of human rotavirus: nucleotide sequence analysis of antigenic mutants selected with monoclonal antibodies. J. Virol. 1988, 62:1870-1874.
46. Vesikari T., Karvonen A., Forrest B.D., Hoshino Y., Chanock R.M., Kapikian A.Z. Neonatal administration of rhesus rotavirus tetravalent vaccine. Pediatr. Infect. Dis. J. 2006, 25:118-122.
47. Wang Y.H., Kobayashi N., Zhou X., Nagashima S., Zhu Z.R., Peng J.S., Liu M.Q., Hu Q., Shou D.J., Watanabe S., Ishino M. Phylogenetic analysis of rotaviruses with predominant G3 and emerging G9 genotypes from adults and children in Wuhan. Chin. J. Med. Virol. 2009, 81:382-389.
48. Yan H., Nguyen T.A., Phan T.G., Okitsu S., Li Y., Ushijima H. Development of RT-multiplex PCR assay for detection of adenovirus and group A and C rotaviruses in diarrheal fecal specimens from children in China. Kansenshogaku. Zasshi. 2004, 78:699-709.
49. Yoshinaga M., Phan T.G., Nguyen T.A., Yan H., Yagyu F., Okitsu S., Müller W.E., Ushijima H. Changing distribution of group A rotavirus G-types and genetic analysis of G9 circulating in Japan. Arch. Virol. 2006, 151:183-192.