Genetic diversity and zoonotic potential of human rotavirus strains, 2003-2006, Hungary

Journal of Medical Virology

Volumn 81, Issue 2, 2009, Pages 362-370

  Bányai, Krisztián ^a,b   Bogdán, Ágnes ^a   Domonkos, Gertrud ^a   Kisfali, Péter ^a   Molnár, Péter ^c   Tóth, András ^c   Melegh, Béla ^a   Martella, Vito ^d   Gentsch, Jon R ^e   Szucs, György ^a  

^a UNIVERSITY OF PÉCS   (Hungary)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^c Laboratory for Diagnostic Virology   (Hungary)

^d UNIVERSITY OF BARI   (Italy)

^e CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

Genotype; Phylogenetic analysis; Surveillance

Indexed keywords

ARTICLE; GENETIC VARIABILITY; GENOTYPE; HUMAN; HUMAN ROTAVIRUS; HUNGARY; MAJOR CLINICAL STUDY; MULTIPLEX POLYMERASE CHAIN REACTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; STATISTICAL SIGNIFICANCE; VIRUS STRAIN; ADOLESCENT; ANIMAL; CHILD; CLASSIFICATION; FECES; GENETICS; IMMUNOLOGY; INFANT; MOLECULAR GENETICS; PRESCHOOL CHILD; ROTAVIRUS; VIROLOGY; VIRUS INFECTION; ZOONOSIS;

ADOLESCENT; ANIMALS; ANTIGENS, VIRAL; CHILD; CHILD, PRESCHOOL; FECES; GENETIC VARIATION; GENOTYPE; HUMANS; HUNGARY; INFANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; ROTAVIRUS; ROTAVIRUS INFECTIONS; ZOONOSES;

ANIMALIA; BOVINAE; EQUIDAE; FELIDAE; HUMAN ROTAVIRUS A; LEPORIDAE; ROTAVIRUS; SUS;

VIRUS ANTIGEN;

EID: 61749090610     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21375     Document Type: Article

References (52)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25:3389-3402.
2. Bányai K, Gentsch JR, Griffin DD, Holmes JL, Glass RI, Szücs G. 2003. Genetic variability among serotype G6 human rotaviruses: Identification of a novel lineage isolated in Hungary. J Med Virol 71:124-134.
3. Bányai K, Gentsch JR, Glass RI, Uj M, Mihály I, Szücs G. 2004a. Eight-year survey of human rotavirus strains demonstrates circulation of unusual G and P types in Hungary. J Clin Microbiol 42:393-397.
4. Bányai K, Martella V, Jakab F, Melegh B, Szücs G. 2004b. Sequencing and phylogenetic analysis of human genotype P[6] rotavirus strains detected in Hungary provides evidence for genetic heterogeneity within the P[6] VP4 gene. J Clin Microbiol 42:4338-4343.
5. Bányai K, Gentsch JR, Schipp R, Jakab F, Meleg E, Mihály I, Szücs G. 2005a. Dominating prevalence of P[8],G1 and P[8],G9 rotavirus strains among children admitted to hospital between 2000 and 2003 in Budapest, Hungary. J Med Virol 76:414-423.
6. Bányai K, Forgách P, Erdélyi K, Martella V, Bogdán Á, Hocsák E, Havasi V, Melegh B, Szucombining double acute accentcs G. 2005b. Identification of the novel lapine rotavirus genotype P[22] from an outbreak of enteritis in a Hungarian rabbitry. Virus Res 113:73-80.
7. Bányai K, Bogdán A, Kisfali P, Molnár P, Mihály I, Melegh B, Martella V, Gentsch JR, Szücs G. 2007. Emergence of serotype G12 rotaviruses, Hungary. Emerg Infect Dis 13:916-919.
8. Castello AA, Argüelles MH, Rota RP, Olthoff A, Jiang B, Glass RI, Gentsch JR, Glikmann G. 2006. Molecular epidemiology of group A rotavirus diarrhea among children in Buenos Aires, Argentina, from 1999 to 2003 and emergence of the infrequent genotype G12. J Clin Microbiol 44:2046-2050.
9. Cunliffe NA, Gondwe JS, Graham SM, Thindwa BD, Dove W, Broadhead RL, Molyneux ME, Hart CA. 2001. Rotavirus strain diversity in Blantyre, Malawi, from 1997 to 1999. J Clin Microbiol 39:836-843.
10. Das BK, Gentsch JR, Cicirello HG, Woods PA, Gupta A, Ramachandran M, Kumar R, Bhan MK, Glass RI. 1994. Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 32:1820-1822.
11. Das S, Varghese V, Chaudhury S, Barman P, Mahapatra S, Kojima K, Bhattacharya SK, Krishnan T, Ratho RK, Chhotray GP, Phukan AC, Kobayashi N, Naik TN. 2003. Emergence of novel human group A rotavirus G12 strains in India. J Clin Microbiol 41:2760-2762.
12. Dolan KT, Twist EM, Horton-Slight P, Forrer C, Bell LM, Jr., Plotkin SA, Clark HF. 1985. Epidemiology of rotavirus electropherotypes determined by a simplified diagnostic technique with RNA analysis. J Clin Microbiol 21:753-758.
13. Estes MK, Kapikian AZ. 2007. Rotaviruses, p. 1917-1974. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology, 5th edition, Vol. 2. Philadelphia, PA: Lippincott Williams Wolters Kluwer.
14. Fischer TK, Page NA, Griffin DD, Eugen-Olsen J, Pedersen AG, Valentiner-Branth P, Mølbak K, Sommerfelt H, Nielsen NM. 2003. Characterization of incompletely typed rotavirus strains from Guinea-Bissau: Identification of G8 and G9 types and a high frequency of mixed infections. Virology 311:125-133.
15. Fukai K, Takahashi T, Tajima K, Koike S, Iwane K, Inoue K. 2007. Molecular characterization of a novel bovine group A rotavirus. Vet Microbiol 123:217-224.
16. Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365-1373.
17. Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Banyai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI. 2005. Serotype diversity and reassortment between human and animal rotavirus strains: Implications for rotavirus vaccine programs. J Infect Dis 192:S146-S159.
18. Ghosh S, Varghese V, Samajdar S, Bhattacharya SK, Kobayashi N, Naik TN. 2007. Evidence for independent segregation of the VP6- and NSP4-encoding genes in porcine group A rotavirus G6P[13] strains. Arch Virol 152:423-429.
19. Gollop R, Nakagomi O, Silberstein I, Shulman LM, Greenberg HB, Mendelson E, Shif I. 1998. Three forms of AU-1 like human rotaviruses differentiated by their overall genomic constellation and by the sequence of their VP8. Arch Virol 143:263-277.
20. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28:276-282.
21. Iizuka M, Kaga E, Chiba M, Masamune O, Gerna G, Nakagomi O. 1994. Serotype G6 human rotavirus sharing a conserved genetic constellation with natural reassortants between members of the bovine and AU-1 genogroups. Arch Virol 135:427-432.
22. Iturriza-Gómara M, Isherwood B, Desselberger U, Gray J. 2001. Reassortment in vivo: Driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999. J Virol 75:3696-3705.
23. Iturriza-Gòmara M, Anderton E, Kang G, Gallimore C, Phillips W, Desselberger U, Gray J. 2003. Evidence for genetic linkage between the gene segments encoding NSP4 and VP6 proteins in common and reassortant human rotavirus strains. J Clin Microbiol 41:3566-3573.
24. Kang G, Iturriza-Gomara M, Wheeler JG, Crystal P, Monica B, Ramani S, Primrose B, Moses PD, Gallimore CI, Brown DW, Gray J. 2004. Quantitation of group A rotavirus by real-time reverse-transcription-polymerase chain reaction: Correlation with clinical severity in children in South India. J Med Virol 73:118-122.
25. Kirkwood CD, Cannan D, Bogdanovic-Sakran N, Bishop RF, Barnes GL, National Rotavirus Surveillance Group. 2007. Australian Rotavirus Surveillance Program: Annual report, 2006-07. Commun Dis Intell 31:375-379.
26. Kiulia NM, Peenze I, Dewar J, Nyachieo A, Galo M, Omolo E, Steele AD, Mwenda JM. 2006. Molecular characterisation of the rotavirus strains prevalent in Maua, Meru North, Kenya. East Afr Med J 83:360-365.
27. Le VP, Kim JY, Cho SL, Nam SW, Lim I, Lee HJ, Kim K, Chung SI, Song W, Lee KM, Rhee MS, Lee JS, Kim W. 2008. Detection of unusual rotavirus genotypes G8P[8] and G12P[6] in South Korea. J Med Virol 80:175-182.
28. Martella V, Ciarlet M, Pratelli A, Arista S, Terio V, Elia G, Cavalli A, Gentile M, Decaro N, Greco G, Cafiero MA, Tempesta M, Buonavoglia C. 2003. Molecular analysis of the VP7, VP4, VP6, NSP4, and NSP5/6 genes of a buffalo rotavirus strain: Identification of the rare P[3] rhesus rotavirus-like VP4 gene allele. J Clin Microbiol 41:5665-5675.
29. Martella V, Bányai K, Ciarlet M, Iturriza-Gómara M, Lorusso E, De Grazia S, Arista S, Decaro N, Elia G, Cavalli A, Corrente M, Lavazza A, Baselga R, Buonavoglia C. 2006. Relationships among porcine and human P[6] rotaviruses: Evidence that the different human P[6] lineages have originated from multiple interspecies transmission events. Virology 344:509-519.
30. Martella V, Ciarlet M, Bányai K, Lorusso E, Arista S, Lavazza A, Pezzotti G, Decaro N, Cavalli A, Lucente MS, Corrente M, Elia G, Camero M, Tempesta M, Buonavoglia C. 2007. Identification of group A porcine rotavirus strains bearing a novel VP4 (P) genotype in Italian swine herds. J Clin Microbiol 45:577-580.
31. Matthijnssens J, Rahman M, Yang X, Delbeke T, Arijs I, Kabue JP, Muyembe JJ, Van Ranst M. 2006. G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J Clin Microbiol 44:1801-1809.
32. Medici MC, Abelli LA, Martella V, Martinelli M, Lorusso E, Buonavoglia C, Dettori G, Chezzi C. 2007. Characterization of inter-genogroup reassortant rotavirus strains detected in hospitalized children in Italy. J Med Virol 79:1406-1412.
33. Montenegro FM, Correia JB, Rodrigues Falbo A, Dove W, Nakagomi T, Nakagomi O, Cuevas LE, Cunliffe NA, Hart CA. 2007. Anticipating rotavirus vaccines in Brazil: Detection and molecular characterization of emerging rotavirus serotypes G8 and G9 among children with diarrhoea in Recife, Brazil. J Med Virol 79:335-340.
34. Mori Y, Borgan MA, Ito N, Sugiyama M, Minamoto N. 2002. Sequential analysis of nonstructural protein NSP4s derived from group A avian rotaviruses. Virus Res 89:145-151.
35. Nakagomi T, Gentsch JR, Das BK, Kumar R, Bhan MK, Glass RI, Nakagomi O. 2002. Molecular characterization of serotype G2 and G3 human rotavirus strains that have an apparently identical electropherotype of the short RNA pattern. Arch Virol 147:2187-2195.
36. Nielsen NM, Eugen-Olsen J, Aaby P, Mølbak K, Rodrigues A, Fischer TK. 2002. Characterisation of rotavirus strains among hospitalised and non-hospitalised children in Guinea-Bissau, 2002: A high frequency of mixed infections with serotype G8. J Clin Virol 34:13-21.
37. Parashar UD, Gibson CJ, Bresee JS, Glass RI. 2006. Rotavirus and severe childhood diarrhea. Emerg Infect Dis 12:304-306.
38. Pun SB, Nakagomi T, Sherchand JB, Pandey BD, Cuevas LE, Cunliffe NA, Hart CA, Nakagomi O. 2007. Detection of G12 human rotaviruses in Nepal. Emerg Infect Dis 13:482-484.
39. Rahman M, Matthijnssens J, Nahar S, Podder G, Sack DA, Azim T, Van Ranst M. 2005. Characterization of a novel P[25],G11 human group a rotavirus. J Clin Microbiol 43:3208-3212.
40. Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gómara M, Iftekharuddin N, Azim T, Van Ranst M. 2007. Evolutionary history and global spread of the emerging G12 human rotaviruses. J Virol 81:2382-2390.
41. Ruiz-Palacios GM, Pérez-Schael I, Velázquez FR, Abate H, Breuer T, Clemens SC, Cheuvart B, Espinoza F, Gillard P, Innis BL, Cervantes Y, Linhares AC, López P, Macías-Parra M, Ortega-Barría E, Richardson V, Rivera-Medina DM, Rivera L, Salinas B, Pavía-Ruz N, Salmerón J, Rüttimann R, Tinoco JC, Rubio P, Nuñez E, Guerrero ML, Yarzábal JP, Damaso S, Tornieporth N, Sáez-Llorens X, Vergara RF, Vesikari T, Bouckenooghe A, Clemens R, De Vos B, O'Ryan M, Human Rotavirus Vaccine Study Group. 2006. Safety and efficacy of an attenuated vaccine against severe rotavirus gastroenteritis. N Engl J Med 354:11-22.
42. Samajdar S, Varghese V, Barman P, Ghosh S, Mitra U, Dutta P, Bhattacharya SK, Narasimham MV, Panda P, Krishnan T, Kobayashi N, Naik TN. 2006. Changing pattern of human group A rotaviruses: Emergence of G12 as an important pathogen among children in eastern India. J Clin Virol 36:183-188.
43. Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29-56.
44. Sharma S, Ray P, Gentsch JR, Glass RI, Kalra V, Bhan MK. 2008. Emergence of G12 Rotavirus strains in Delhi 2000-2007. J Clin Microbiol 46:1343-1348.
45. Steele AD, Nimzing L, Peenze I, De Beer MC, Geyer A, Angyo I, Gomwalk NE. 2002. Circulation of the novel G9 and G8 rotavirus strains in Nigeria in 1998/1999. J Med Virol 67:608-612.
46. Steyer A, Poljsak-Prijatelj M, Bufon TL, Marcun-Varda N, Marin J. 2007. Rotavirus genotypes in Slovenia: Unexpected detection of G8P[8] and G12P[8] genotypes. J Med Virol 79:626-632.
47. Szücs G, Matson DO, Uj M, Kukán E, Mihály I, Jelenik Z, Estes MK. 1995. Group A rotavirus G type prevalence in two regions of Hungary. Arch Virol 140:1693-1703.
48. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
49. Tcheremenskaia O, Marucci G, De Petris S, Ruggeri FM, Dovecar D, Sternak SL, Matyasova I, Dhimolea MK, Mladenova Z, Fiore L, Rotavirus Study Group. 2007. Molecular epidemiology of rotavirus in Central and Southeastern Europe. J Clin Microbiol 45:2197-2204.
50. Van Damme P, Giaquinto C, Maxwell M, Todd P, Van der Wielen M, REVEAL Study Group. 2007. Distribution of rotavirus genotypes in Europe, 2004-2005: The REVEAL study. J Infect Dis 195:S17-S25.
51. van der Heide R, Koopmans MP, Shekary N, Houwers DJ, van Duynhoven YT, van der Poel WH. 2005. Molecular characterizations of human and animal group a rotaviruses in the Netherlands. J Clin Microbiol 43:669-675.
52. Vesikari T, Matson DO, Dennehy P, Van Damme P, Santosham M, Rodriguez Z, Dallas MJ, Heyse JF, Goveia MG, Black SB, Shinefield HR, Christie CD, Ylitalo S, Itzler RF, Coia ML, Onorato MT, Adeyi BA, Marshall GS, Gothefors L, Campens D, Karvonen A, Watt JP, O'Brien KL, DiNubile MJ, Clark HF, Boslego JW, Offit PA, Heaton PM, Rotavirus Efficacy and Safety Trial (REST) Study Team. 2006. Safety and efficacy of a pentavalent human-bovine (WC3) reassortant rotavirus vaccine. N Engl J Med 354:23-33.